data_6DHC # _model_server_result.job_id syPqXIh7vCKB9Ijz6ey4IQ _model_server_result.datetime_utc '2024-11-25 05:40:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dhc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":405}' # _entry.id 6DHC # _exptl.entry_id 6DHC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.055 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UREA _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.98 _cell.angle_gamma 90 _cell.entry_id 6DHC _cell.length_a 81.987 _cell.length_b 103.322 _cell.length_c 100.959 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DHC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,U 1 1 B,K,L,M,N,O,V 2 1 C,P,Q,R,S,T,W 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 J N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 203 A CYS 155 1_555 A SG CYS 407 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf2 A SG CYS 265 A CYS 217 1_555 A SG CYS 430 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf3 A SG CYS 317 A CYS 269 1_555 A SG CYS 367 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 B SG CYS 203 B CYS 155 1_555 B SG CYS 407 B CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf5 B SG CYS 265 B CYS 217 1_555 B SG CYS 430 B CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf6 B SG CYS 317 B CYS 269 1_555 B SG CYS 367 B CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf7 C SG CYS 203 C CYS 155 1_555 C SG CYS 407 C CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf8 C SG CYS 265 C CYS 217 1_555 C SG CYS 430 C CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf9 C SG CYS 317 C CYS 269 1_555 C SG CYS 367 C CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'C H4 N2 O' _chem_comp.formula_weight 60.055 _chem_comp.id URE _chem_comp.mon_nstd_flag . _chem_comp.name UREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O URE doub 471 n n C N1 URE sing 472 n n C N2 URE sing 473 n n N1 HN11 URE sing 474 n n N1 HN12 URE sing 475 n n N2 HN21 URE sing 476 n n N2 HN22 URE sing 477 n n # _atom_sites.entry_id 6DHC _atom_sites.fract_transf_matrix[1][1] 0.012197 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002812 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009678 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010165 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GHJ A 1 401 1 GHJ C3A . E 3 GOL A 1 402 3 GOL GOL . F 3 GOL A 1 403 4 GOL GOL . G 3 GOL A 1 404 8 GOL GOL . H 4 URE A 1 405 2 URE URE . I 4 URE A 1 406 3 URE URE . J 4 URE A 1 407 4 URE URE . K 2 GHJ B 1 401 2 GHJ C3A . L 3 GOL B 1 402 9 GOL GOL . M 3 GOL B 1 403 10 GOL GOL . N 3 GOL B 1 404 11 GOL GOL . O 4 URE B 1 405 1 URE URE . P 2 GHJ C 1 401 3 GHJ C3A . Q 3 GOL C 1 402 1 GOL GOL . R 3 GOL C 1 403 6 GOL GOL . S 3 GOL C 1 404 7 GOL GOL . T 5 SO4 C 1 405 1 SO4 SO4 . U 6 HOH A 1 501 18 HOH HOH . U 6 HOH A 2 502 8 HOH HOH . U 6 HOH A 3 503 191 HOH HOH . U 6 HOH A 4 504 19 HOH HOH . U 6 HOH A 5 505 69 HOH HOH . U 6 HOH A 6 506 187 HOH HOH . U 6 HOH A 7 507 196 HOH HOH . U 6 HOH A 8 508 210 HOH HOH . U 6 HOH A 9 509 59 HOH HOH . U 6 HOH A 10 510 127 HOH HOH . U 6 HOH A 11 511 132 HOH HOH . U 6 HOH A 12 512 110 HOH HOH . U 6 HOH A 13 513 212 HOH HOH . U 6 HOH A 14 514 241 HOH HOH . U 6 HOH A 15 515 224 HOH HOH . U 6 HOH A 16 516 23 HOH HOH . U 6 HOH A 17 517 164 HOH HOH . U 6 HOH A 18 518 33 HOH HOH . U 6 HOH A 19 519 85 HOH HOH . U 6 HOH A 20 520 65 HOH HOH . U 6 HOH A 21 521 97 HOH HOH . U 6 HOH A 22 522 189 HOH HOH . U 6 HOH A 23 523 31 HOH HOH . U 6 HOH A 24 524 4 HOH HOH . U 6 HOH A 25 525 158 HOH HOH . U 6 HOH A 26 526 178 HOH HOH . U 6 HOH A 27 527 223 HOH HOH . U 6 HOH A 28 528 192 HOH HOH . U 6 HOH A 29 529 67 HOH HOH . U 6 HOH A 30 530 1 HOH HOH . U 6 HOH A 31 531 240 HOH HOH . U 6 HOH A 32 532 80 HOH HOH . U 6 HOH A 33 533 68 HOH HOH . U 6 HOH A 34 534 113 HOH HOH . U 6 HOH A 35 535 50 HOH HOH . U 6 HOH A 36 536 193 HOH HOH . U 6 HOH A 37 537 72 HOH HOH . U 6 HOH A 38 538 20 HOH HOH . U 6 HOH A 39 539 58 HOH HOH . U 6 HOH A 40 540 96 HOH HOH . U 6 HOH A 41 541 122 HOH HOH . U 6 HOH A 42 542 171 HOH HOH . U 6 HOH A 43 543 195 HOH HOH . U 6 HOH A 44 544 128 HOH HOH . U 6 HOH A 45 545 244 HOH HOH . U 6 HOH A 46 546 168 HOH HOH . U 6 HOH A 47 547 173 HOH HOH . U 6 HOH A 48 548 40 HOH HOH . U 6 HOH A 49 549 53 HOH HOH . U 6 HOH A 50 550 172 HOH HOH . U 6 HOH A 51 551 190 HOH HOH . U 6 HOH A 52 552 101 HOH HOH . U 6 HOH A 53 553 135 HOH HOH . U 6 HOH A 54 554 131 HOH HOH . U 6 HOH A 55 555 129 HOH HOH . U 6 HOH A 56 556 93 HOH HOH . U 6 HOH A 57 557 177 HOH HOH . U 6 HOH A 58 558 121 HOH HOH . U 6 HOH A 59 559 134 HOH HOH . U 6 HOH A 60 560 130 HOH HOH . U 6 HOH A 61 561 133 HOH HOH . U 6 HOH A 62 562 56 HOH HOH . U 6 HOH A 63 563 209 HOH HOH . U 6 HOH A 64 564 188 HOH HOH . U 6 HOH A 65 565 98 HOH HOH . U 6 HOH A 66 566 163 HOH HOH . U 6 HOH A 67 567 39 HOH HOH . U 6 HOH A 68 568 112 HOH HOH . U 6 HOH A 69 569 155 HOH HOH . U 6 HOH A 70 570 79 HOH HOH . U 6 HOH A 71 571 26 HOH HOH . U 6 HOH A 72 572 74 HOH HOH . U 6 HOH A 73 573 162 HOH HOH . U 6 HOH A 74 574 179 HOH HOH . U 6 HOH A 75 575 176 HOH HOH . U 6 HOH A 76 576 211 HOH HOH . U 6 HOH A 77 577 156 HOH HOH . U 6 HOH A 78 578 157 HOH HOH . V 6 HOH B 1 501 215 HOH HOH . V 6 HOH B 2 502 202 HOH HOH . V 6 HOH B 3 503 203 HOH HOH . V 6 HOH B 4 504 170 HOH HOH . V 6 HOH B 5 505 90 HOH HOH . V 6 HOH B 6 506 139 HOH HOH . V 6 HOH B 7 507 89 HOH HOH . V 6 HOH B 8 508 201 HOH HOH . V 6 HOH B 9 509 94 HOH HOH . V 6 HOH B 10 510 88 HOH HOH . V 6 HOH B 11 511 12 HOH HOH . V 6 HOH B 12 512 137 HOH HOH . V 6 HOH B 13 513 21 HOH HOH . V 6 HOH B 14 514 46 HOH HOH . V 6 HOH B 15 515 54 HOH HOH . V 6 HOH B 16 516 3 HOH HOH . V 6 HOH B 17 517 243 HOH HOH . V 6 HOH B 18 518 100 HOH HOH . V 6 HOH B 19 519 167 HOH HOH . V 6 HOH B 20 520 140 HOH HOH . V 6 HOH B 21 521 245 HOH HOH . V 6 HOH B 22 522 200 HOH HOH . V 6 HOH B 23 523 64 HOH HOH . V 6 HOH B 24 524 91 HOH HOH . V 6 HOH B 25 525 15 HOH HOH . V 6 HOH B 26 526 95 HOH HOH . V 6 HOH B 27 527 42 HOH HOH . V 6 HOH B 28 528 226 HOH HOH . V 6 HOH B 29 529 78 HOH HOH . V 6 HOH B 30 530 111 HOH HOH . V 6 HOH B 31 531 205 HOH HOH . V 6 HOH B 32 532 32 HOH HOH . V 6 HOH B 33 533 199 HOH HOH . V 6 HOH B 34 534 106 HOH HOH . V 6 HOH B 35 535 30 HOH HOH . V 6 HOH B 36 536 109 HOH HOH . V 6 HOH B 37 537 14 HOH HOH . V 6 HOH B 38 538 60 HOH HOH . V 6 HOH B 39 539 51 HOH HOH . V 6 HOH B 40 540 92 HOH HOH . V 6 HOH B 41 541 61 HOH HOH . V 6 HOH B 42 542 123 HOH HOH . V 6 HOH B 43 543 114 HOH HOH . V 6 HOH B 44 544 125 HOH HOH . V 6 HOH B 45 545 76 HOH HOH . V 6 HOH B 46 546 66 HOH HOH . V 6 HOH B 47 547 82 HOH HOH . V 6 HOH B 48 548 63 HOH HOH . V 6 HOH B 49 549 225 HOH HOH . V 6 HOH B 50 550 35 HOH HOH . V 6 HOH B 51 551 7 HOH HOH . V 6 HOH B 52 552 207 HOH HOH . V 6 HOH B 53 553 232 HOH HOH . V 6 HOH B 54 554 45 HOH HOH . V 6 HOH B 55 555 25 HOH HOH . V 6 HOH B 56 556 227 HOH HOH . V 6 HOH B 57 557 116 HOH HOH . V 6 HOH B 58 558 81 HOH HOH . V 6 HOH B 59 559 197 HOH HOH . V 6 HOH B 60 560 41 HOH HOH . V 6 HOH B 61 561 169 HOH HOH . V 6 HOH B 62 562 204 HOH HOH . V 6 HOH B 63 563 9 HOH HOH . V 6 HOH B 64 564 73 HOH HOH . V 6 HOH B 65 565 103 HOH HOH . V 6 HOH B 66 566 186 HOH HOH . V 6 HOH B 67 567 87 HOH HOH . V 6 HOH B 68 568 84 HOH HOH . V 6 HOH B 69 569 216 HOH HOH . V 6 HOH B 70 570 48 HOH HOH . V 6 HOH B 71 571 206 HOH HOH . V 6 HOH B 72 572 141 HOH HOH . V 6 HOH B 73 573 28 HOH HOH . V 6 HOH B 74 574 86 HOH HOH . V 6 HOH B 75 575 120 HOH HOH . V 6 HOH B 76 576 136 HOH HOH . V 6 HOH B 77 577 213 HOH HOH . V 6 HOH B 78 578 142 HOH HOH . V 6 HOH B 79 579 214 HOH HOH . V 6 HOH B 80 580 222 HOH HOH . V 6 HOH B 81 581 159 HOH HOH . V 6 HOH B 82 582 166 HOH HOH . W 6 HOH C 1 501 11 HOH HOH . W 6 HOH C 2 502 13 HOH HOH . W 6 HOH C 3 503 231 HOH HOH . W 6 HOH C 4 504 105 HOH HOH . W 6 HOH C 5 505 152 HOH HOH . W 6 HOH C 6 506 36 HOH HOH . W 6 HOH C 7 507 220 HOH HOH . W 6 HOH C 8 508 17 HOH HOH . W 6 HOH C 9 509 218 HOH HOH . W 6 HOH C 10 510 6 HOH HOH . W 6 HOH C 11 511 104 HOH HOH . W 6 HOH C 12 512 233 HOH HOH . W 6 HOH C 13 513 230 HOH HOH . W 6 HOH C 14 514 27 HOH HOH . W 6 HOH C 15 515 62 HOH HOH . W 6 HOH C 16 516 118 HOH HOH . W 6 HOH C 17 517 228 HOH HOH . W 6 HOH C 18 518 71 HOH HOH . W 6 HOH C 19 519 38 HOH HOH . W 6 HOH C 20 520 43 HOH HOH . W 6 HOH C 21 521 235 HOH HOH . W 6 HOH C 22 522 37 HOH HOH . W 6 HOH C 23 523 238 HOH HOH . W 6 HOH C 24 524 154 HOH HOH . W 6 HOH C 25 525 148 HOH HOH . W 6 HOH C 26 526 221 HOH HOH . W 6 HOH C 27 527 5 HOH HOH . W 6 HOH C 28 528 34 HOH HOH . W 6 HOH C 29 529 16 HOH HOH . W 6 HOH C 30 530 107 HOH HOH . W 6 HOH C 31 531 2 HOH HOH . W 6 HOH C 32 532 219 HOH HOH . W 6 HOH C 33 533 229 HOH HOH . W 6 HOH C 34 534 77 HOH HOH . W 6 HOH C 35 535 149 HOH HOH . W 6 HOH C 36 536 181 HOH HOH . W 6 HOH C 37 537 124 HOH HOH . W 6 HOH C 38 538 22 HOH HOH . W 6 HOH C 39 539 102 HOH HOH . W 6 HOH C 40 540 115 HOH HOH . W 6 HOH C 41 541 10 HOH HOH . W 6 HOH C 42 542 83 HOH HOH . W 6 HOH C 43 543 236 HOH HOH . W 6 HOH C 44 544 70 HOH HOH . W 6 HOH C 45 545 242 HOH HOH . W 6 HOH C 46 546 99 HOH HOH . W 6 HOH C 47 547 55 HOH HOH . W 6 HOH C 48 548 52 HOH HOH . W 6 HOH C 49 549 75 HOH HOH . W 6 HOH C 50 550 198 HOH HOH . W 6 HOH C 51 551 183 HOH HOH . W 6 HOH C 52 552 44 HOH HOH . W 6 HOH C 53 553 234 HOH HOH . W 6 HOH C 54 554 57 HOH HOH . W 6 HOH C 55 555 239 HOH HOH . W 6 HOH C 56 556 47 HOH HOH . W 6 HOH C 57 557 143 HOH HOH . W 6 HOH C 58 558 24 HOH HOH . W 6 HOH C 59 559 208 HOH HOH . W 6 HOH C 60 560 126 HOH HOH . W 6 HOH C 61 561 150 HOH HOH . W 6 HOH C 62 562 119 HOH HOH . W 6 HOH C 63 563 165 HOH HOH . W 6 HOH C 64 564 138 HOH HOH . W 6 HOH C 65 565 175 HOH HOH . W 6 HOH C 66 566 144 HOH HOH . W 6 HOH C 67 567 29 HOH HOH . W 6 HOH C 68 568 151 HOH HOH . W 6 HOH C 69 569 182 HOH HOH . W 6 HOH C 70 570 153 HOH HOH . W 6 HOH C 71 571 194 HOH HOH . W 6 HOH C 72 572 174 HOH HOH . W 6 HOH C 73 573 108 HOH HOH . W 6 HOH C 74 574 217 HOH HOH . W 6 HOH C 75 575 49 HOH HOH . W 6 HOH C 76 576 180 HOH HOH . W 6 HOH C 77 577 146 HOH HOH . W 6 HOH C 78 578 145 HOH HOH . W 6 HOH C 79 579 237 HOH HOH . W 6 HOH C 80 580 117 HOH HOH . W 6 HOH C 81 581 185 HOH HOH . W 6 HOH C 82 582 160 HOH HOH . W 6 HOH C 83 583 161 HOH HOH . W 6 HOH C 84 584 147 HOH HOH . W 6 HOH C 85 585 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C URE . . . H 4 -13.419 -37.81 10.301 1 73.15 ? C URE 405 A 1 HETATM 2 O O URE . . . H 4 -12.703 -36.942 9.912 1 72.92 ? O URE 405 A 1 HETATM 3 N N1 URE . . . H 4 -14.784 -37.508 10.702 1 64.89 ? N1 URE 405 A 1 HETATM 4 N N2 URE . . . H 4 -12.93 -39.181 10.378 1 69.88 ? N2 URE 405 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #