data_6DHL
#
_model_server_result.job_id            74VW5WQxcZJSJMD5R4moog 
_model_server_result.datetime_utc      '2024-11-14 18:07:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dhl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":601}' 
#
_entry.id    6DHL 
#
_exptl.entry_id    6DHL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              442.372 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R,3S)-2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-3,4-dihydro-2H-chromen-3-yl 3,4,5-trihydroxybenzoate' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          118.74 
_cell.angle_gamma         90 
_cell.entry_id            6DHL 
_cell.length_a            95.12 
_cell.length_b            433.18 
_cell.length_c            95.17 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DHL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA hexameric 6 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,M,N,O,P,Q,R 1 1 
G,H,I,J,K,L,S,T,U,V,W,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            K 
_struct_conn.ptnr1_label_atom_id            NH2 
_struct_conn.ptnr1_label_comp_id            ARG 
_struct_conn.ptnr1_label_seq_id             212 
_struct_conn.ptnr1_auth_asym_id             K 
_struct_conn.ptnr1_auth_comp_id             ARG 
_struct_conn.ptnr1_auth_seq_id              217 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            K 
_struct_conn.ptnr2_label_atom_id            CG 
_struct_conn.ptnr2_label_comp_id            HIS 
_struct_conn.ptnr2_label_seq_id             445 
_struct_conn.ptnr2_auth_asym_id             K 
_struct_conn.ptnr2_auth_comp_id             HIS 
_struct_conn.ptnr2_auth_seq_id              450 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.531 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C22 H18 O10' 
_chem_comp.formula_weight    442.372 
_chem_comp.id                XEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R,3S)-2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-3,4-dihydro-2H-chromen-3-yl 3,4,5-trihydroxybenzoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAA CAS XEG doub 374 n n 
CAT OAB XEG sing 375 n n 
OAB HOAB XEG sing 376 n n 
CAU OAC XEG sing 377 n n 
OAC HOAC XEG sing 378 n n 
CAV OAD XEG sing 379 n n 
OAD HOAD XEG sing 380 n n 
OAE CAW XEG sing 381 n n 
OAE HOAE XEG sing 382 n n 
CAX OAF XEG sing 383 n n 
OAF HOAF XEG sing 384 n n 
OAG CAY XEG sing 385 n n 
OAG HOAG XEG sing 386 n n 
CBB OAH XEG sing 387 n n 
OAH HOAH XEG sing 388 n n 
CAJ CAI XEG doub 389 n y 
CAI CAU XEG sing 390 n y 
CAI HAI XEG sing 391 n n 
CAJ CBA XEG sing 392 n y 
CAJ HAJ XEG sing 393 n n 
CAY CAK XEG doub 394 n y 
CAK CAT XEG sing 395 n y 
CAK HAK XEG sing 396 n n 
CAL CAW XEG doub 397 n y 
CAL CAZ XEG sing 398 n y 
CAL HAL XEG sing 399 n n 
CAZ CAM XEG doub 400 n y 
CAM CAX XEG sing 401 n y 
CAM HAM XEG sing 402 n n 
CBC CAN XEG sing 403 n y 
CAN CAT XEG doub 404 n y 
CAN HAN XEG sing 405 n n 
CBA CAO XEG doub 406 n y 
CAO CAV XEG sing 407 n y 
CAO HAO XEG sing 408 n n 
CBE CAP XEG sing 409 n n 
CAP CBD XEG sing 410 n n 
CAP HAP XEG sing 411 n n 
CAP HAPA XEG sing 412 n n 
CAS OAQ XEG sing 413 n n 
OAQ CBE XEG sing 414 n n 
CBF OAR XEG sing 415 n n 
OAR CBC XEG sing 416 n n 
CAS CAZ XEG sing 417 n n 
CAU CAV XEG doub 418 n y 
CAW CBB XEG sing 419 n y 
CBB CAX XEG doub 420 n y 
CBD CAY XEG sing 421 n y 
CBF CBA XEG sing 422 n n 
CBD CBC XEG doub 423 n y 
CBE CBF XEG sing 424 n n 
CBE HBE XEG sing 425 n n 
CBF HBF XEG sing 426 n n 
#
_atom_sites.entry_id                     6DHL 
_atom_sites.fract_transf_matrix[1][1]    0.010513 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005765 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.002309 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011984 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 XEG A 1 601 601 XEG XEG . 
N 2 XEG B 1 601 601 XEG XEG . 
O 2 XEG C 1 601 601 XEG XEG . 
P 2 XEG D 1 601 601 XEG XEG . 
Q 2 XEG E 1 601 601 XEG XEG . 
R 2 XEG F 1 601 601 XEG XEG . 
S 2 XEG G 1 601 601 XEG XEG . 
T 2 XEG H 1 601 601 XEG XEG . 
U 2 XEG I 1 601 601 XEG XEG . 
V 2 XEG J 1 601 601 XEG XEG . 
W 2 XEG K 1 601 601 XEG XEG . 
X 2 XEG L 1 601 601 XEG XEG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAA XEG . . . Q 2 8.35 -55.929 1.702 1 105.17 ? OAA XEG 601 E 1 
HETATM 2 O OAB XEG . . . Q 2 15.86 -61.025 -2.534 1 123.79 ? OAB XEG 601 E 1 
HETATM 3 O OAC XEG . . . Q 2 16.427 -55.199 3.586 1 90.71 ? OAC XEG 601 E 1 
HETATM 4 O OAD XEG . . . Q 2 16.422 -53.956 1.063 1 99.35 ? OAD XEG 601 E 1 
HETATM 5 O OAE XEG . . . Q 2 7.421 -61.486 1.277 1 101.85 ? OAE XEG 601 E 1 
HETATM 6 O OAF XEG . . . Q 2 10.046 -60.142 5.037 1 106.19 ? OAF XEG 601 E 1 
HETATM 7 O OAG XEG . . . Q 2 12.074 -61.773 0.015 1 125.71 ? OAG XEG 601 E 1 
HETATM 8 O OAH XEG . . . Q 2 8.606 -62.09 3.723 1 111.31 ? OAH XEG 601 E 1 
HETATM 9 C CAI XEG . . . Q 2 14.414 -56.446 2.939 1 96.1 ? CAI XEG 601 E 1 
HETATM 10 C CAJ XEG . . . Q 2 13.422 -56.756 2.006 1 108.22 ? CAJ XEG 601 E 1 
HETATM 11 C CAK XEG . . . Q 2 13.891 -61.217 -1.241 1 127.41 ? CAK XEG 601 E 1 
HETATM 12 C CAL XEG . . . Q 2 8.281 -59.224 1.391 1 104.19 ? CAL XEG 601 E 1 
HETATM 13 C CAM XEG . . . Q 2 9.604 -58.532 3.27 1 110.05 ? CAM XEG 601 E 1 
HETATM 14 C CAN XEG . . . Q 2 14.451 -58.966 -2.002 1 116.67 ? CAN XEG 601 E 1 
HETATM 15 C CAO XEG . . . Q 2 14.427 -55.209 0.444 1 101.91 ? CAO XEG 601 E 1 
HETATM 16 C CAP XEG . . . Q 2 11.245 -58.748 0.007 1 115.86 ? CAP XEG 601 E 1 
HETATM 17 O OAQ XEG . . . Q 2 9.971 -56.732 0.278 1 101.06 ? OAQ XEG 601 E 1 
HETATM 18 O OAR XEG . . . Q 2 12.953 -57.029 -1.386 1 113.3 ? OAR XEG 601 E 1 
HETATM 19 C CAS XEG . . . Q 2 9.085 -56.883 1.334 1 105.69 ? CAS XEG 601 E 1 
HETATM 20 C CAT XEG . . . Q 2 14.741 -60.321 -1.945 1 123.6 ? CAT XEG 601 E 1 
HETATM 21 C CAU XEG . . . Q 2 15.406 -55.52 2.624 1 90.66 ? CAU XEG 601 E 1 
HETATM 22 C CAV XEG . . . Q 2 15.41 -54.897 1.372 1 98.96 ? CAV XEG 601 E 1 
HETATM 23 C CAW XEG . . . Q 2 8.155 -60.495 1.948 1 106.71 ? CAW XEG 601 E 1 
HETATM 24 C CAX XEG . . . Q 2 9.476 -59.798 3.828 1 110.21 ? CAX XEG 601 E 1 
HETATM 25 C CAY XEG . . . Q 2 12.759 -60.706 -0.611 1 125.66 ? CAY XEG 601 E 1 
HETATM 26 C CAZ XEG . . . Q 2 9.005 -58.253 2.064 1 110.19 ? CAZ XEG 601 E 1 
HETATM 27 C CBA XEG . . . Q 2 13.432 -56.135 0.766 1 105.66 ? CBA XEG 601 E 1 
HETATM 28 C CBB XEG . . . Q 2 8.75 -60.776 3.162 1 111.29 ? CBB XEG 601 E 1 
HETATM 29 C CBC XEG . . . Q 2 13.323 -58.474 -1.366 1 116.49 ? CBC XEG 601 E 1 
HETATM 30 C CBD XEG . . . Q 2 12.455 -59.358 -0.651 1 120.08 ? CBD XEG 601 E 1 
HETATM 31 C CBE XEG . . . Q 2 11.291 -57.362 0.46 1 108.85 ? CBE XEG 601 E 1 
HETATM 32 C CBF XEG . . . Q 2 12.352 -56.476 -0.228 1 107.1 ? CBF XEG 601 E 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#