data_6DHL # _model_server_result.job_id LbDmIFZbiahSZIP-T30TEg _model_server_result.datetime_utc '2024-11-14 17:59:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dhl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":601}' # _entry.id 6DHL # _exptl.entry_id 6DHL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 442.372 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,3S)-2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-3,4-dihydro-2H-chromen-3-yl 3,4,5-trihydroxybenzoate' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.74 _cell.angle_gamma 90 _cell.entry_id 6DHL _cell.length_a 95.12 _cell.length_b 433.18 _cell.length_c 95.17 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DHL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,M,N,O,P,Q,R 1 1 G,H,I,J,K,L,S,T,U,V,W,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id K _struct_conn.ptnr1_label_atom_id NH2 _struct_conn.ptnr1_label_comp_id ARG _struct_conn.ptnr1_label_seq_id 212 _struct_conn.ptnr1_auth_asym_id K _struct_conn.ptnr1_auth_comp_id ARG _struct_conn.ptnr1_auth_seq_id 217 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id K _struct_conn.ptnr2_label_atom_id CG _struct_conn.ptnr2_label_comp_id HIS _struct_conn.ptnr2_label_seq_id 445 _struct_conn.ptnr2_auth_asym_id K _struct_conn.ptnr2_auth_comp_id HIS _struct_conn.ptnr2_auth_seq_id 450 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.531 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C22 H18 O10' _chem_comp.formula_weight 442.372 _chem_comp.id XEG _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,3S)-2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-3,4-dihydro-2H-chromen-3-yl 3,4,5-trihydroxybenzoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA CAS XEG doub 374 n n CAT OAB XEG sing 375 n n OAB HOAB XEG sing 376 n n CAU OAC XEG sing 377 n n OAC HOAC XEG sing 378 n n CAV OAD XEG sing 379 n n OAD HOAD XEG sing 380 n n OAE CAW XEG sing 381 n n OAE HOAE XEG sing 382 n n CAX OAF XEG sing 383 n n OAF HOAF XEG sing 384 n n OAG CAY XEG sing 385 n n OAG HOAG XEG sing 386 n n CBB OAH XEG sing 387 n n OAH HOAH XEG sing 388 n n CAJ CAI XEG doub 389 n y CAI CAU XEG sing 390 n y CAI HAI XEG sing 391 n n CAJ CBA XEG sing 392 n y CAJ HAJ XEG sing 393 n n CAY CAK XEG doub 394 n y CAK CAT XEG sing 395 n y CAK HAK XEG sing 396 n n CAL CAW XEG doub 397 n y CAL CAZ XEG sing 398 n y CAL HAL XEG sing 399 n n CAZ CAM XEG doub 400 n y CAM CAX XEG sing 401 n y CAM HAM XEG sing 402 n n CBC CAN XEG sing 403 n y CAN CAT XEG doub 404 n y CAN HAN XEG sing 405 n n CBA CAO XEG doub 406 n y CAO CAV XEG sing 407 n y CAO HAO XEG sing 408 n n CBE CAP XEG sing 409 n n CAP CBD XEG sing 410 n n CAP HAP XEG sing 411 n n CAP HAPA XEG sing 412 n n CAS OAQ XEG sing 413 n n OAQ CBE XEG sing 414 n n CBF OAR XEG sing 415 n n OAR CBC XEG sing 416 n n CAS CAZ XEG sing 417 n n CAU CAV XEG doub 418 n y CAW CBB XEG sing 419 n y CBB CAX XEG doub 420 n y CBD CAY XEG sing 421 n y CBF CBA XEG sing 422 n n CBD CBC XEG doub 423 n y CBE CBF XEG sing 424 n n CBE HBE XEG sing 425 n n CBF HBF XEG sing 426 n n # _atom_sites.entry_id 6DHL _atom_sites.fract_transf_matrix[1][1] 0.010513 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005765 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002309 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011984 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 XEG A 1 601 601 XEG XEG . N 2 XEG B 1 601 601 XEG XEG . O 2 XEG C 1 601 601 XEG XEG . P 2 XEG D 1 601 601 XEG XEG . Q 2 XEG E 1 601 601 XEG XEG . R 2 XEG F 1 601 601 XEG XEG . S 2 XEG G 1 601 601 XEG XEG . T 2 XEG H 1 601 601 XEG XEG . U 2 XEG I 1 601 601 XEG XEG . V 2 XEG J 1 601 601 XEG XEG . W 2 XEG K 1 601 601 XEG XEG . X 2 XEG L 1 601 601 XEG XEG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA XEG . . . R 2 13.773 -7.446 -10.163 1 117.47 ? OAA XEG 601 F 1 HETATM 2 O OAB XEG . . . R 2 13.845 -6.187 -20.044 1 125.97 ? OAB XEG 601 F 1 HETATM 3 O OAC XEG . . . R 2 7.512 -9.576 -14.836 1 98.52 ? OAC XEG 601 F 1 HETATM 4 O OAD XEG . . . R 2 9.278 -11.368 -16.073 1 123.08 ? OAD XEG 601 F 1 HETATM 5 O OAE XEG . . . R 2 16.039 -2.618 -12.249 1 112.15 ? OAE XEG 601 F 1 HETATM 6 O OAF XEG . . . R 2 11.331 -2.644 -11.517 1 116.38 ? OAF XEG 601 F 1 HETATM 7 O OAG XEG . . . R 2 14.721 -3.976 -16.07 1 139.37 ? OAG XEG 601 F 1 HETATM 8 O OAH XEG . . . R 2 13.641 -1.244 -12.06 1 119.4 ? OAH XEG 601 F 1 HETATM 9 C CAI XEG . . . R 2 9.452 -8.29 -14.013 1 102.88 ? CAI XEG 601 F 1 HETATM 10 C CAJ XEG . . . R 2 10.836 -8.102 -13.911 1 107.3 ? CAJ XEG 601 F 1 HETATM 11 C CAK XEG . . . R 2 14.268 -5.225 -17.932 1 134.66 ? CAK XEG 601 F 1 HETATM 12 C CAL XEG . . . R 2 14.908 -4.721 -11.786 1 107.12 ? CAL XEG 601 F 1 HETATM 13 C CAM XEG . . . R 2 12.541 -4.746 -11.417 1 111.93 ? CAM XEG 601 F 1 HETATM 14 C CAN XEG . . . R 2 13.774 -7.622 -17.93 1 131.97 ? CAN XEG 601 F 1 HETATM 15 C CAO XEG . . . R 2 11.189 -10.081 -15.249 1 115.59 ? CAO XEG 601 F 1 HETATM 16 C CAP XEG . . . R 2 14.372 -6.554 -14.357 1 126.34 ? CAP XEG 601 F 1 HETATM 17 O OAQ XEG . . . R 2 14.149 -7.817 -12.383 1 118.79 ? OAQ XEG 601 F 1 HETATM 18 O OAR XEG . . . R 2 13.747 -8.886 -15.726 1 127.27 ? OAR XEG 601 F 1 HETATM 19 C CAS XEG . . . R 2 13.89 -6.963 -11.322 1 118.09 ? CAS XEG 601 F 1 HETATM 20 C CAT XEG . . . R 2 13.947 -6.427 -18.62 1 131.49 ? CAT XEG 601 F 1 HETATM 21 C CAU XEG . . . R 2 8.938 -9.374 -14.73 1 104.16 ? CAU XEG 601 F 1 HETATM 22 C CAV XEG . . . R 2 9.814 -10.272 -15.35 1 117.35 ? CAV XEG 601 F 1 HETATM 23 C CAW XEG . . . R 2 14.866 -3.337 -11.969 1 114.86 ? CAW XEG 601 F 1 HETATM 24 C CAX XEG . . . R 2 12.5 -3.369 -11.599 1 114.49 ? CAX XEG 601 F 1 HETATM 25 C CAY XEG . . . R 2 14.406 -5.269 -16.547 1 135.42 ? CAY XEG 601 F 1 HETATM 26 C CAZ XEG . . . R 2 13.737 -5.419 -11.514 1 115.13 ? CAZ XEG 601 F 1 HETATM 27 C CBA XEG . . . R 2 11.699 -8.997 -14.529 1 111.72 ? CBA XEG 601 F 1 HETATM 28 C CBB XEG . . . R 2 13.664 -2.668 -11.873 1 119.24 ? CBB XEG 601 F 1 HETATM 29 C CBC XEG . . . R 2 13.914 -7.647 -16.549 1 130.28 ? CBC XEG 601 F 1 HETATM 30 C CBD XEG . . . R 2 14.236 -6.445 -15.846 1 129.2 ? CBD XEG 601 F 1 HETATM 31 C CBE XEG . . . R 2 13.5 -7.482 -13.658 1 125.5 ? CBE XEG 601 F 1 HETATM 32 C CBF XEG . . . R 2 13.191 -8.792 -14.42 1 119.82 ? CBF XEG 601 F 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #