data_6DHL # _model_server_result.job_id JN0PQzUaT2kzhw3Eu915Lw _model_server_result.datetime_utc '2024-12-02 11:06:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dhl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":601}' # _entry.id 6DHL # _exptl.entry_id 6DHL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 442.372 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,3S)-2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-3,4-dihydro-2H-chromen-3-yl 3,4,5-trihydroxybenzoate' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.74 _cell.angle_gamma 90 _cell.entry_id 6DHL _cell.length_a 95.12 _cell.length_b 433.18 _cell.length_c 95.17 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DHL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,M,N,O,P,Q,R 1 1 G,H,I,J,K,L,S,T,U,V,W,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id K _struct_conn.ptnr1_label_atom_id NH2 _struct_conn.ptnr1_label_comp_id ARG _struct_conn.ptnr1_label_seq_id 212 _struct_conn.ptnr1_auth_asym_id K _struct_conn.ptnr1_auth_comp_id ARG _struct_conn.ptnr1_auth_seq_id 217 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id K _struct_conn.ptnr2_label_atom_id CG _struct_conn.ptnr2_label_comp_id HIS _struct_conn.ptnr2_label_seq_id 445 _struct_conn.ptnr2_auth_asym_id K _struct_conn.ptnr2_auth_comp_id HIS _struct_conn.ptnr2_auth_seq_id 450 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.531 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C22 H18 O10' _chem_comp.formula_weight 442.372 _chem_comp.id XEG _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,3S)-2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-3,4-dihydro-2H-chromen-3-yl 3,4,5-trihydroxybenzoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA CAS XEG doub 374 n n CAT OAB XEG sing 375 n n OAB HOAB XEG sing 376 n n CAU OAC XEG sing 377 n n OAC HOAC XEG sing 378 n n CAV OAD XEG sing 379 n n OAD HOAD XEG sing 380 n n OAE CAW XEG sing 381 n n OAE HOAE XEG sing 382 n n CAX OAF XEG sing 383 n n OAF HOAF XEG sing 384 n n OAG CAY XEG sing 385 n n OAG HOAG XEG sing 386 n n CBB OAH XEG sing 387 n n OAH HOAH XEG sing 388 n n CAJ CAI XEG doub 389 n y CAI CAU XEG sing 390 n y CAI HAI XEG sing 391 n n CAJ CBA XEG sing 392 n y CAJ HAJ XEG sing 393 n n CAY CAK XEG doub 394 n y CAK CAT XEG sing 395 n y CAK HAK XEG sing 396 n n CAL CAW XEG doub 397 n y CAL CAZ XEG sing 398 n y CAL HAL XEG sing 399 n n CAZ CAM XEG doub 400 n y CAM CAX XEG sing 401 n y CAM HAM XEG sing 402 n n CBC CAN XEG sing 403 n y CAN CAT XEG doub 404 n y CAN HAN XEG sing 405 n n CBA CAO XEG doub 406 n y CAO CAV XEG sing 407 n y CAO HAO XEG sing 408 n n CBE CAP XEG sing 409 n n CAP CBD XEG sing 410 n n CAP HAP XEG sing 411 n n CAP HAPA XEG sing 412 n n CAS OAQ XEG sing 413 n n OAQ CBE XEG sing 414 n n CBF OAR XEG sing 415 n n OAR CBC XEG sing 416 n n CAS CAZ XEG sing 417 n n CAU CAV XEG doub 418 n y CAW CBB XEG sing 419 n y CBB CAX XEG doub 420 n y CBD CAY XEG sing 421 n y CBF CBA XEG sing 422 n n CBD CBC XEG doub 423 n y CBE CBF XEG sing 424 n n CBE HBE XEG sing 425 n n CBF HBF XEG sing 426 n n # _atom_sites.entry_id 6DHL _atom_sites.fract_transf_matrix[1][1] 0.010513 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005765 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002309 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011984 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 XEG A 1 601 601 XEG XEG . N 2 XEG B 1 601 601 XEG XEG . O 2 XEG C 1 601 601 XEG XEG . P 2 XEG D 1 601 601 XEG XEG . Q 2 XEG E 1 601 601 XEG XEG . R 2 XEG F 1 601 601 XEG XEG . S 2 XEG G 1 601 601 XEG XEG . T 2 XEG H 1 601 601 XEG XEG . U 2 XEG I 1 601 601 XEG XEG . V 2 XEG J 1 601 601 XEG XEG . W 2 XEG K 1 601 601 XEG XEG . X 2 XEG L 1 601 601 XEG XEG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA XEG . . . S 2 -37.334 107.867 14.351 1 122.62 ? OAA XEG 601 G 1 HETATM 2 O OAB XEG . . . S 2 -41.855 113.162 7.19 1 132.41 ? OAB XEG 601 G 1 HETATM 3 O OAC XEG . . . S 2 -45.399 106.923 12.249 1 93.54 ? OAC XEG 601 G 1 HETATM 4 O OAD XEG . . . S 2 -44.255 105.917 9.899 1 98.84 ? OAD XEG 601 G 1 HETATM 5 O OAE XEG . . . S 2 -36.306 113.42 14.496 1 101.51 ? OAE XEG 601 G 1 HETATM 6 O OAF XEG . . . S 2 -40.35 112.043 16.622 1 109.79 ? OAF XEG 601 G 1 HETATM 7 O OAG XEG . . . S 2 -39.65 113.705 11.218 1 124.94 ? OAG XEG 601 G 1 HETATM 8 O OAH XEG . . . S 2 -38.467 114 16.147 1 112.12 ? OAH XEG 601 G 1 HETATM 9 C CAI XEG . . . S 2 -43.326 108.17 12.692 1 96.17 ? CAI XEG 601 G 1 HETATM 10 C CAJ XEG . . . S 2 -42.024 108.53 12.333 1 107.03 ? CAJ XEG 601 G 1 HETATM 11 C CAK XEG . . . S 2 -40.707 113.251 9.249 1 123.29 ? CAK XEG 601 G 1 HETATM 12 C CAL XEG . . . S 2 -37.135 111.161 14.159 1 101.61 ? CAL XEG 601 G 1 HETATM 13 C CAM XEG . . . S 2 -39.165 110.457 15.218 1 109.49 ? CAM XEG 601 G 1 HETATM 14 C CAN XEG . . . S 2 -40.994 111.022 8.282 1 121.17 ? CAN XEG 601 G 1 HETATM 15 C CAO XEG . . . S 2 -42.204 107.161 10.35 1 105.8 ? CAO XEG 601 G 1 HETATM 16 C CAP XEG . . . S 2 -39.111 110.658 11.55 1 118.16 ? CAP XEG 601 G 1 HETATM 17 O OAQ XEG . . . S 2 -38.182 108.641 12.366 1 119.72 ? OAQ XEG 601 G 1 HETATM 18 O OAR XEG . . . S 2 -40.08 109.001 9.496 1 117.66 ? OAR XEG 601 G 1 HETATM 19 C CAS XEG . . . S 2 -37.844 108.818 13.701 1 115.54 ? CAS XEG 601 G 1 HETATM 20 C CAT XEG . . . S 2 -41.187 112.396 8.22 1 128.26 ? CAT XEG 601 G 1 HETATM 21 C CAU XEG . . . S 2 -44.06 107.304 11.882 1 95.42 ? CAU XEG 601 G 1 HETATM 22 C CAV XEG . . . S 2 -43.496 106.797 10.709 1 99.92 ? CAV XEG 601 G 1 HETATM 23 C CAW XEG . . . S 2 -37.266 112.425 14.738 1 109.97 ? CAW XEG 601 G 1 HETATM 24 C CAX XEG . . . S 2 -39.296 111.714 15.797 1 112.67 ? CAX XEG 601 G 1 HETATM 25 C CAY XEG . . . S 2 -40.034 112.679 10.324 1 123.79 ? CAY XEG 601 G 1 HETATM 26 C CAZ XEG . . . S 2 -38.09 110.186 14.405 1 105.18 ? CAZ XEG 601 G 1 HETATM 27 C CBA XEG . . . S 2 -41.468 108.025 11.166 1 112.98 ? CBA XEG 601 G 1 HETATM 28 C CBB XEG . . . S 2 -38.346 112.695 15.555 1 114.49 ? CBB XEG 601 G 1 HETATM 29 C CBC XEG . . . S 2 -40.324 110.469 9.363 1 121.39 ? CBC XEG 601 G 1 HETATM 30 C CBD XEG . . . S 2 -39.834 111.315 10.408 1 123.15 ? CBD XEG 601 G 1 HETATM 31 C CBE XEG . . . S 2 -39.426 109.284 11.91 1 119.51 ? CBE XEG 601 G 1 HETATM 32 C CBF XEG . . . S 2 -40.059 108.421 10.791 1 118.12 ? CBF XEG 601 G 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #