data_6DHL # _model_server_result.job_id N58ZcaiD-KOSN0-YlqcrNA _model_server_result.datetime_utc '2024-11-14 18:07:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dhl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":601}' # _entry.id 6DHL # _exptl.entry_id 6DHL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 442.372 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,3S)-2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-3,4-dihydro-2H-chromen-3-yl 3,4,5-trihydroxybenzoate' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.74 _cell.angle_gamma 90 _cell.entry_id 6DHL _cell.length_a 95.12 _cell.length_b 433.18 _cell.length_c 95.17 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DHL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,M,N,O,P,Q,R 1 1 G,H,I,J,K,L,S,T,U,V,W,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id K _struct_conn.ptnr1_label_atom_id NH2 _struct_conn.ptnr1_label_comp_id ARG _struct_conn.ptnr1_label_seq_id 212 _struct_conn.ptnr1_auth_asym_id K _struct_conn.ptnr1_auth_comp_id ARG _struct_conn.ptnr1_auth_seq_id 217 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id K _struct_conn.ptnr2_label_atom_id CG _struct_conn.ptnr2_label_comp_id HIS _struct_conn.ptnr2_label_seq_id 445 _struct_conn.ptnr2_auth_asym_id K _struct_conn.ptnr2_auth_comp_id HIS _struct_conn.ptnr2_auth_seq_id 450 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.531 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C22 H18 O10' _chem_comp.formula_weight 442.372 _chem_comp.id XEG _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,3S)-2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-3,4-dihydro-2H-chromen-3-yl 3,4,5-trihydroxybenzoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA CAS XEG doub 374 n n CAT OAB XEG sing 375 n n OAB HOAB XEG sing 376 n n CAU OAC XEG sing 377 n n OAC HOAC XEG sing 378 n n CAV OAD XEG sing 379 n n OAD HOAD XEG sing 380 n n OAE CAW XEG sing 381 n n OAE HOAE XEG sing 382 n n CAX OAF XEG sing 383 n n OAF HOAF XEG sing 384 n n OAG CAY XEG sing 385 n n OAG HOAG XEG sing 386 n n CBB OAH XEG sing 387 n n OAH HOAH XEG sing 388 n n CAJ CAI XEG doub 389 n y CAI CAU XEG sing 390 n y CAI HAI XEG sing 391 n n CAJ CBA XEG sing 392 n y CAJ HAJ XEG sing 393 n n CAY CAK XEG doub 394 n y CAK CAT XEG sing 395 n y CAK HAK XEG sing 396 n n CAL CAW XEG doub 397 n y CAL CAZ XEG sing 398 n y CAL HAL XEG sing 399 n n CAZ CAM XEG doub 400 n y CAM CAX XEG sing 401 n y CAM HAM XEG sing 402 n n CBC CAN XEG sing 403 n y CAN CAT XEG doub 404 n y CAN HAN XEG sing 405 n n CBA CAO XEG doub 406 n y CAO CAV XEG sing 407 n y CAO HAO XEG sing 408 n n CBE CAP XEG sing 409 n n CAP CBD XEG sing 410 n n CAP HAP XEG sing 411 n n CAP HAPA XEG sing 412 n n CAS OAQ XEG sing 413 n n OAQ CBE XEG sing 414 n n CBF OAR XEG sing 415 n n OAR CBC XEG sing 416 n n CAS CAZ XEG sing 417 n n CAU CAV XEG doub 418 n y CAW CBB XEG sing 419 n y CBB CAX XEG doub 420 n y CBD CAY XEG sing 421 n y CBF CBA XEG sing 422 n n CBD CBC XEG doub 423 n y CBE CBF XEG sing 424 n n CBE HBE XEG sing 425 n n CBF HBF XEG sing 426 n n # _atom_sites.entry_id 6DHL _atom_sites.fract_transf_matrix[1][1] 0.010513 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005765 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002309 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011984 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 XEG A 1 601 601 XEG XEG . N 2 XEG B 1 601 601 XEG XEG . O 2 XEG C 1 601 601 XEG XEG . P 2 XEG D 1 601 601 XEG XEG . Q 2 XEG E 1 601 601 XEG XEG . R 2 XEG F 1 601 601 XEG XEG . S 2 XEG G 1 601 601 XEG XEG . T 2 XEG H 1 601 601 XEG XEG . U 2 XEG I 1 601 601 XEG XEG . V 2 XEG J 1 601 601 XEG XEG . W 2 XEG K 1 601 601 XEG XEG . X 2 XEG L 1 601 601 XEG XEG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA XEG . . . U 2 -36.987 59.511 1.734 1 113.26 ? OAA XEG 601 I 1 HETATM 2 O OAB XEG . . . U 2 -32.192 58.364 -6.919 1 121.52 ? OAB XEG 601 I 1 HETATM 3 O OAC XEG . . . U 2 -28.584 61.448 0.675 1 92.08 ? OAC XEG 601 I 1 HETATM 4 O OAD XEG . . . U 2 -29.704 63.41 -0.997 1 98.02 ? OAD XEG 601 I 1 HETATM 5 O OAE XEG . . . U 2 -37.06 54.576 -1.058 1 122.99 ? OAE XEG 601 I 1 HETATM 6 O OAF XEG . . . U 2 -33.744 54.947 2.362 1 107.2 ? OAF XEG 601 I 1 HETATM 7 O OAG XEG . . . U 2 -33.922 55.852 -3.441 1 121.17 ? OAG XEG 601 I 1 HETATM 8 O OAH XEG . . . U 2 -35.136 53.378 0.575 1 119.61 ? OAH XEG 601 I 1 HETATM 9 C CAI XEG . . . U 2 -30.666 60.145 0.482 1 102.56 ? CAI XEG 601 I 1 HETATM 10 C CAJ XEG . . . U 2 -31.962 59.987 -0.022 1 106.06 ? CAJ XEG 601 I 1 HETATM 11 C CAK XEG . . . U 2 -33.104 57.242 -5.051 1 120.61 ? CAK XEG 601 I 1 HETATM 12 C CAL XEG . . . U 2 -36.601 56.723 -0.047 1 102.91 ? CAL XEG 601 I 1 HETATM 13 C CAM XEG . . . U 2 -34.934 56.941 1.664 1 106.52 ? CAM XEG 601 I 1 HETATM 14 C CAN XEG . . . U 2 -33.014 59.68 -4.888 1 124.48 ? CAN XEG 601 I 1 HETATM 15 C CAO XEG . . . U 2 -31.76 62.103 -1.179 1 116.39 ? CAO XEG 601 I 1 HETATM 16 C CAP XEG . . . U 2 -34.541 58.338 -1.688 1 125.64 ? CAP XEG 601 I 1 HETATM 17 O OAQ XEG . . . U 2 -35.835 59.786 -0.246 1 128.37 ? OAQ XEG 601 I 1 HETATM 18 O OAR XEG . . . U 2 -33.875 60.848 -2.803 1 110.28 ? OAR XEG 601 I 1 HETATM 19 C CAS XEG . . . U 2 -36.279 59.008 0.819 1 117.59 ? CAS XEG 601 I 1 HETATM 20 C CAT XEG . . . U 2 -32.772 58.511 -5.6 1 122.31 ? CAT XEG 601 I 1 HETATM 21 C CAU XEG . . . U 2 -29.92 61.28 0.157 1 99.76 ? CAU XEG 601 I 1 HETATM 22 C CAV XEG . . . U 2 -30.472 62.262 -0.677 1 106.96 ? CAV XEG 601 I 1 HETATM 23 C CAW XEG . . . U 2 -36.342 55.361 -0.142 1 115.86 ? CAW XEG 601 I 1 HETATM 24 C CAX XEG . . . U 2 -34.684 55.577 1.576 1 109.99 ? CAX XEG 601 I 1 HETATM 25 C CAY XEG . . . U 2 -33.676 57.202 -3.782 1 127.38 ? CAY XEG 601 I 1 HETATM 26 C CAZ XEG . . . U 2 -35.896 57.501 0.857 1 106.99 ? CAZ XEG 601 I 1 HETATM 27 C CBA XEG . . . U 2 -32.502 60.963 -0.851 1 110.79 ? CBA XEG 601 I 1 HETATM 28 C CBB XEG . . . U 2 -35.387 54.79 0.674 1 117.92 ? CBB XEG 601 I 1 HETATM 29 C CBC XEG . . . U 2 -33.585 59.625 -3.621 1 124.88 ? CBC XEG 601 I 1 HETATM 30 C CBD XEG . . . U 2 -33.921 58.355 -3.057 1 130.36 ? CBD XEG 601 I 1 HETATM 31 C CBE XEG . . . U 2 -34.491 59.484 -0.784 1 118.9 ? CBE XEG 601 I 1 HETATM 32 C CBF XEG . . . U 2 -33.899 60.777 -1.384 1 105.72 ? CBF XEG 601 I 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #