data_6DHM
#
_model_server_result.job_id            s0f-WCPiStSQdzUxSYioTw 
_model_server_result.datetime_utc      '2024-11-28 05:21:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dhm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AA","auth_seq_id":601}' 
#
_entry.id    6DHM 
#
_exptl.entry_id    6DHM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              147.129 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'GLUTAMIC ACID' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.55 
_cell.angle_gamma         90 
_cell.entry_id            6DHM 
_cell.length_a            121.11 
_cell.length_b            98.76 
_cell.length_c            165.64 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DHM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 L N N 
? 2 Q N N 
? 2 V N N 
? 2 AA N N 
? 2 GA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 138 A HIS 57 1_555 Y ZN ZN . D ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc2 A OE1 GLU 232 A GLU 151 1_555 J ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? 
metalc ? metalc3 A NE2 HIS 290 A HIS 209 1_555 K ZN ZN . A ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc4 A NE2 HIS 531 A HIS 450 1_555 K ZN ZN . A ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? 
metalc ? metalc5 I O1B GTP . A GTP 603 1_555 K ZN ZN . A ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc6 J ZN ZN . A ZN 604 1_555 D NE2 HIS 138 D HIS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc7 B NE2 HIS 138 B HIS 57 1_555 DA ZN ZN . E ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc8 B OE1 GLU 232 B GLU 151 1_555 O ZN ZN . B ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc9 B OE2 GLU 232 B GLU 151 1_555 O ZN ZN . B ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc10 B NE2 HIS 290 B HIS 209 1_555 P ZN ZN . B ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc11 B NE2 HIS 531 B HIS 450 1_555 P ZN ZN . B ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc12 N O1B GTP . B GTP 603 1_555 P ZN ZN . B ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc13 O ZN ZN . B ZN 604 1_555 E NE2 HIS 138 E HIS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc14 C NE2 HIS 138 C HIS 57 1_555 FA ZN ZN . F ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc15 C OE1 GLU 232 C GLU 151 1_555 T ZN ZN . C ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc16 C OE2 GLU 232 C GLU 151 1_555 T ZN ZN . C ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? 
metalc ? metalc17 C NE2 HIS 290 C HIS 209 1_555 U ZN ZN . C ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc18 C NE2 HIS 531 C HIS 450 1_555 U ZN ZN . C ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
metalc ? metalc19 S O2B GTP . C GTP 603 1_555 U ZN ZN . C ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc20 T ZN ZN . C ZN 604 1_555 F NE2 HIS 138 F HIS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc21 D OE1 GLU 232 D GLU 151 1_555 Y ZN ZN . D ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc22 D OE2 GLU 232 D GLU 151 1_555 Y ZN ZN . D ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc23 D NE2 HIS 290 D HIS 209 1_555 Z ZN ZN . D ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc24 D NE2 HIS 531 D HIS 450 1_555 Z ZN ZN . D ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
metalc ? metalc25 X O2B GTP . D GTP 603 1_555 Z ZN ZN . D ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc26 E OE1 GLU 232 E GLU 151 1_555 DA ZN ZN . E ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc27 E OE2 GLU 232 E GLU 151 1_555 DA ZN ZN . E ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc28 E NE2 HIS 290 E HIS 209 1_555 EA ZN ZN . E ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
metalc ? metalc29 E NE2 HIS 531 E HIS 450 1_555 EA ZN ZN . E ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc30 CA O2B GTP . E GTP 603 1_555 EA ZN ZN . E ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc31 F OE1 GLU 232 F GLU 151 1_555 FA ZN ZN . F ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc32 F OE2 GLU 232 F GLU 151 1_555 FA ZN ZN . F ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc33 F NE2 HIS 290 F HIS 209 1_555 JA ZN ZN . F ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc34 F NE2 HIS 531 F HIS 450 1_555 JA ZN ZN . F ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc35 IA O1B GTP . F GTP 604 1_555 JA ZN ZN . F ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
#
_chem_comp.formula           'C5 H9 N O4' 
_chem_comp.formula_weight    147.129 
_chem_comp.id                GLU 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              'GLUTAMIC ACID' 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA GLU sing 102 n n 
N H GLU sing 103 n n 
N H2 GLU sing 104 n n 
CA C GLU sing 105 n n 
CA CB GLU sing 106 n n 
CA HA GLU sing 107 n n 
C O GLU doub 108 n n 
C OXT GLU sing 109 n n 
CB CG GLU sing 110 n n 
CB HB2 GLU sing 111 n n 
CB HB3 GLU sing 112 n n 
CG CD GLU sing 113 n n 
CG HG2 GLU sing 114 n n 
CG HG3 GLU sing 115 n n 
CD OE1 GLU doub 116 n n 
CD OE2 GLU sing 117 n n 
OE2 HE2 GLU sing 118 n n 
OXT HXT GLU sing 119 n n 
#
_atom_sites.entry_id                     6DHM 
_atom_sites.fract_transf_matrix[1][1]    0.008257 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001687 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010126 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006162 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 GLU A 1 601 502 GLU GLU . 
H 3 NDP A 1 602 552 NDP NDP . 
I 4 GTP A 1 603 503 GTP GTP . 
J 5 ZN A 1 604 504 ZN ZN . 
K 5 ZN A 1 605 505 ZN ZN . 
L 2 GLU B 1 601 502 GLU GLU . 
M 3 NDP B 1 602 552 NDP NDP . 
N 4 GTP B 1 603 503 GTP GTP . 
O 5 ZN B 1 604 504 ZN ZN . 
P 5 ZN B 1 605 505 ZN ZN . 
Q 2 GLU C 1 601 502 GLU GLU . 
R 3 NDP C 1 602 552 NDP NDP . 
S 4 GTP C 1 603 503 GTP GTP . 
T 5 ZN C 1 604 504 ZN ZN . 
U 5 ZN C 1 605 506 ZN ZN . 
V 2 GLU D 1 601 502 GLU GLU . 
W 3 NDP D 1 602 552 NDP NDP . 
X 4 GTP D 1 603 503 GTP GTP . 
Y 5 ZN D 1 604 504 ZN ZN . 
Z 5 ZN D 1 605 505 ZN ZN . 
AA 2 GLU E 1 601 502 GLU GLU . 
BA 3 NDP E 1 602 552 NDP NDP . 
CA 4 GTP E 1 603 503 GTP GTP . 
DA 5 ZN E 1 604 504 ZN ZN . 
EA 5 ZN E 1 605 505 ZN ZN . 
FA 5 ZN F 1 601 505 ZN ZN . 
GA 2 GLU F 1 602 502 GLU GLU . 
HA 3 NDP F 1 603 552 NDP NDP . 
IA 4 GTP F 1 604 503 GTP GTP . 
JA 5 ZN F 1 605 504 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N GLU . . . AA 2 22.518 18.887 48.949 1 34.74 ? N GLU 601 E 1 
HETATM 2 C CA GLU . . . AA 2 21.193 18.267 48.943 1 36.59 ? CA GLU 601 E 1 
HETATM 3 C C GLU . . . AA 2 20.961 17.52 50.249 1 35.01 ? C GLU 601 E 1 
HETATM 4 O O GLU . . . AA 2 19.852 17.46 50.778 1 33.01 ? O GLU 601 E 1 
HETATM 5 C CB GLU . . . AA 2 21.037 17.313 47.749 1 31.22 ? CB GLU 601 E 1 
HETATM 6 C CG GLU . . . AA 2 21.867 16.052 47.858 1 28.09 ? CG GLU 601 E 1 
HETATM 7 C CD GLU . . . AA 2 21.605 15.074 46.73 1 25.96 ? CD GLU 601 E 1 
HETATM 8 O OE1 GLU . . . AA 2 20.878 15.445 45.783 1 26.38 ? OE1 GLU 601 E 1 
HETATM 9 O OE2 GLU . . . AA 2 22.137 13.941 46.79 1 22.31 ? OE2 GLU 601 E 1 
HETATM 10 O OXT GLU . . . AA 2 21.909 16.972 50.807 1 36.35 ? OXT GLU 601 E 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           233 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           10 
#