data_6DHN
#
_model_server_result.job_id            EAtU8JQxkwy5vnH4XlSVzg 
_model_server_result.datetime_utc      '2024-10-19 19:53:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dhn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":602}' 
#
_entry.id    6DHN 
#
_exptl.entry_id    6DHN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.55 
_cell.angle_gamma         90 
_cell.entry_id            6DHN 
_cell.length_a            121.11 
_cell.length_b            98.76 
_cell.length_c            165.64 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DHN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 L N N 
? 3 P N N 
? 3 T N N 
? 3 X N N 
? 3 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 469 A ASN 388 1_555 J O3D NAI . A NAI 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? 
covale ? covale2 C NH2 ARG 346 C ARG 265 1_555 P O1G GTP . C GTP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
covale ? covale3 D NH1 ARG 167 D ARG 86 1_555 V O7N NAI . D NAI 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? 
covale ? covale4 D NH1 ARG 346 D ARG 265 1_555 T O2G GTP . D GTP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? 
covale ? covale5 E NH2 ARG 346 E ARG 265 1_555 X O2G GTP . E GTP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6DHN 
_atom_sites.fract_transf_matrix[1][1]    0.008257 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001687 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010126 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006162 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 GLU A 1 601 601 GLU GLU . 
H 3 GTP A 1 602 602 GTP GTP . 
I 4 NAI A 1 603 603 NAI NAI . 
J 4 NAI A 1 604 604 NAI NAI . 
K 2 GLU B 1 601 601 GLU GLU . 
L 3 GTP B 1 602 602 GTP GTP . 
M 4 NAI B 1 603 603 NAI NAI . 
N 4 NAI B 1 604 605 NAI NAI . 
O 2 GLU C 1 601 601 GLU GLU . 
P 3 GTP C 1 602 602 GTP GTP . 
Q 4 NAI C 1 603 603 NAI NAI . 
R 4 NAI C 1 604 604 NAI NAI . 
S 2 GLU D 1 601 601 GLU GLU . 
T 3 GTP D 1 602 602 GTP GTP . 
U 4 NAI D 1 603 603 NAI NAI . 
V 4 NAI D 1 604 604 NAI NAI . 
W 2 GLU E 1 601 601 GLU GLU . 
X 3 GTP E 1 602 602 GTP GTP . 
Y 4 NAI E 1 603 603 NAI NAI . 
Z 4 NAI F 1 601 605 NAI NAI . 
AA 2 GLU F 1 602 601 GLU GLU . 
BA 4 NAI F 1 603 602 NAI NAI . 
CA 3 GTP F 1 604 603 GTP GTP . 
DA 4 NAI F 1 605 604 NAI NAI . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . P 3 37.313 52.178 45.335 1 98.63 ? PG GTP 602 C 1 
HETATM 2 O O1G GTP . . . P 3 37.851 52.787 44.058 1 81.57 -1 O1G GTP 602 C 1 
HETATM 3 O O2G GTP . . . P 3 36.522 53.261 46.03 1 76.76 ? O2G GTP 602 C 1 
HETATM 4 O O3G GTP . . . P 3 36.435 50.98 45.025 1 55.8 ? O3G GTP 602 C 1 
HETATM 5 O O3B GTP . . . P 3 38.589 51.75 46.233 1 88.11 ? O3B GTP 602 C 1 
HETATM 6 P PB GTP . . . P 3 38.584 50.745 47.496 1 73.23 ? PB GTP 602 C 1 
HETATM 7 O O1B GTP . . . P 3 39.402 49.532 47.103 1 41.85 -1 O1B GTP 602 C 1 
HETATM 8 O O2B GTP . . . P 3 39.234 51.391 48.698 1 54.35 ? O2B GTP 602 C 1 
HETATM 9 O O3A GTP . . . P 3 37.025 50.367 47.771 1 95.8 ? O3A GTP 602 C 1 
HETATM 10 P PA GTP . . . P 3 36.007 51.322 48.61 1 108.64 ? PA GTP 602 C 1 
HETATM 11 O O1A GTP . . . P 3 36.776 52.416 49.318 1 80.86 ? O1A GTP 602 C 1 
HETATM 12 O O2A GTP . . . P 3 35.232 50.52 49.631 1 69.39 -1 O2A GTP 602 C 1 
HETATM 13 O O5' GTP . . . P 3 34.943 52.014 47.601 1 95.53 ? O5' GTP 602 C 1 
HETATM 14 C C5' GTP . . . P 3 33.959 51.364 46.817 1 84.52 ? C5' GTP 602 C 1 
HETATM 15 C C4' GTP . . . P 3 32.745 52.294 46.711 1 75.88 ? C4' GTP 602 C 1 
HETATM 16 O O4' GTP . . . P 3 33.035 53.534 47.329 1 82.84 ? O4' GTP 602 C 1 
HETATM 17 C C3' GTP . . . P 3 32.294 52.685 45.31 1 64.21 ? C3' GTP 602 C 1 
HETATM 18 O O3' GTP . . . P 3 31.441 51.732 44.72 1 57.33 ? O3' GTP 602 C 1 
HETATM 19 C C2' GTP . . . P 3 31.536 53.967 45.583 1 72.24 ? C2' GTP 602 C 1 
HETATM 20 O O2' GTP . . . P 3 30.216 53.65 45.961 1 65.15 ? O2' GTP 602 C 1 
HETATM 21 C C1' GTP . . . P 3 32.237 54.574 46.786 1 78.62 ? C1' GTP 602 C 1 
HETATM 22 N N9 GTP . . . P 3 33.096 55.718 46.396 1 77.01 ? N9 GTP 602 C 1 
HETATM 23 C C8 GTP . . . P 3 34.405 55.883 46.775 1 70.4 ? C8 GTP 602 C 1 
HETATM 24 N N7 GTP . . . P 3 34.872 57.039 46.251 1 74.76 ? N7 GTP 602 C 1 
HETATM 25 C C5 GTP . . . P 3 33.88 57.633 45.55 1 80.02 ? C5 GTP 602 C 1 
HETATM 26 C C6 GTP . . . P 3 33.832 58.824 44.827 1 79.17 ? C6 GTP 602 C 1 
HETATM 27 O O6 GTP . . . P 3 34.825 59.553 44.744 1 71.53 ? O6 GTP 602 C 1 
HETATM 28 N N1 GTP . . . P 3 32.659 59.188 44.198 1 73.6 ? N1 GTP 602 C 1 
HETATM 29 C C2 GTP . . . P 3 31.55 58.372 44.291 1 67.83 ? C2 GTP 602 C 1 
HETATM 30 N N2 GTP . . . P 3 30.423 58.728 43.683 1 63.68 ? N2 GTP 602 C 1 
HETATM 31 N N3 GTP . . . P 3 31.606 57.192 45.011 1 63.03 ? N3 GTP 602 C 1 
HETATM 32 C C4 GTP . . . P 3 32.752 56.818 45.635 1 70.76 ? C4 GTP 602 C 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    62 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#