data_6DHN # _model_server_result.job_id WyNEHnHpVIkBBzZdnRNDcg _model_server_result.datetime_utc '2024-11-27 22:32:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dhn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":602}' # _entry.id 6DHN # _exptl.entry_id 6DHN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.55 _cell.angle_gamma 90 _cell.entry_id 6DHN _cell.length_a 121.11 _cell.length_b 98.76 _cell.length_c 165.64 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DHN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 L N N ? 3 P N N ? 3 T N N ? 3 X N N ? 3 CA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 469 A ASN 388 1_555 J O3D NAI . A NAI 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? covale ? covale2 C NH2 ARG 346 C ARG 265 1_555 P O1G GTP . C GTP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? covale ? covale3 D NH1 ARG 167 D ARG 86 1_555 V O7N NAI . D NAI 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? covale ? covale4 D NH1 ARG 346 D ARG 265 1_555 T O2G GTP . D GTP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? covale ? covale5 E NH2 ARG 346 E ARG 265 1_555 X O2G GTP . E GTP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6DHN _atom_sites.fract_transf_matrix[1][1] 0.008257 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001687 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010126 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006162 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 GLU A 1 601 601 GLU GLU . H 3 GTP A 1 602 602 GTP GTP . I 4 NAI A 1 603 603 NAI NAI . J 4 NAI A 1 604 604 NAI NAI . K 2 GLU B 1 601 601 GLU GLU . L 3 GTP B 1 602 602 GTP GTP . M 4 NAI B 1 603 603 NAI NAI . N 4 NAI B 1 604 605 NAI NAI . O 2 GLU C 1 601 601 GLU GLU . P 3 GTP C 1 602 602 GTP GTP . Q 4 NAI C 1 603 603 NAI NAI . R 4 NAI C 1 604 604 NAI NAI . S 2 GLU D 1 601 601 GLU GLU . T 3 GTP D 1 602 602 GTP GTP . U 4 NAI D 1 603 603 NAI NAI . V 4 NAI D 1 604 604 NAI NAI . W 2 GLU E 1 601 601 GLU GLU . X 3 GTP E 1 602 602 GTP GTP . Y 4 NAI E 1 603 603 NAI NAI . Z 4 NAI F 1 601 605 NAI NAI . AA 2 GLU F 1 602 601 GLU GLU . BA 4 NAI F 1 603 602 NAI NAI . CA 3 GTP F 1 604 603 GTP GTP . DA 4 NAI F 1 605 604 NAI NAI . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . T 3 -39.958 50.497 43.823 1 83.51 ? PG GTP 602 D 1 HETATM 2 O O1G GTP . . . T 3 -40.708 51.186 42.709 1 64.25 ? O1G GTP 602 D 1 HETATM 3 O O2G GTP . . . T 3 -40.199 51.191 45.155 1 92.97 -1 O2G GTP 602 D 1 HETATM 4 O O3G GTP . . . T 3 -40.391 49.05 43.887 1 66.54 ? O3G GTP 602 D 1 HETATM 5 O O3B GTP . . . T 3 -38.396 50.512 43.45 1 68.56 ? O3B GTP 602 D 1 HETATM 6 P PB GTP . . . T 3 -37.984 50.161 41.936 1 75.38 ? PB GTP 602 D 1 HETATM 7 O O1B GTP . . . T 3 -38.969 49.162 41.368 1 55.4 ? O1B GTP 602 D 1 HETATM 8 O O2B GTP . . . T 3 -36.562 49.652 41.862 1 65.24 -1 O2B GTP 602 D 1 HETATM 9 O O3A GTP . . . T 3 -38.082 51.568 41.157 1 87.09 ? O3A GTP 602 D 1 HETATM 10 P PA GTP . . . T 3 -37.681 52.976 41.838 1 94.2 ? PA GTP 602 D 1 HETATM 11 O O1A GTP . . . T 3 -37.864 54.068 40.808 1 75.1 -1 O1A GTP 602 D 1 HETATM 12 O O2A GTP . . . T 3 -38.571 53.255 43.024 1 67.86 ? O2A GTP 602 D 1 HETATM 13 O O5' GTP . . . T 3 -36.146 52.917 42.363 1 86.19 ? O5' GTP 602 D 1 HETATM 14 C C5' GTP . . . T 3 -34.963 52.632 41.636 1 63.61 ? C5' GTP 602 D 1 HETATM 15 C C4' GTP . . . T 3 -33.851 52.409 42.668 1 71.36 ? C4' GTP 602 D 1 HETATM 16 O O4' GTP . . . T 3 -32.864 53.437 42.66 1 79.34 ? O4' GTP 602 D 1 HETATM 17 C C3' GTP . . . T 3 -34.402 52.47 44.083 1 72.22 ? C3' GTP 602 D 1 HETATM 18 O O3' GTP . . . T 3 -35.045 51.277 44.474 1 50.7 ? O3' GTP 602 D 1 HETATM 19 C C2' GTP . . . T 3 -33.177 52.844 44.906 1 71.3 ? C2' GTP 602 D 1 HETATM 20 O O2' GTP . . . T 3 -32.373 51.722 45.188 1 59.93 ? O2' GTP 602 D 1 HETATM 21 C C1' GTP . . . T 3 -32.417 53.77 43.975 1 67.45 ? C1' GTP 602 D 1 HETATM 22 N N9 GTP . . . T 3 -32.833 55.15 44.32 1 65.21 ? N9 GTP 602 D 1 HETATM 23 C C8 GTP . . . T 3 -33.925 55.767 43.766 1 74.99 ? C8 GTP 602 D 1 HETATM 24 N N7 GTP . . . T 3 -34.055 57.006 44.277 1 64.04 ? N7 GTP 602 D 1 HETATM 25 C C5 GTP . . . T 3 -33.057 57.208 45.156 1 54.33 ? C5 GTP 602 D 1 HETATM 26 C C6 GTP . . . T 3 -32.753 58.314 45.935 1 47.59 ? C6 GTP 602 D 1 HETATM 27 O O6 GTP . . . T 3 -33.462 59.319 45.875 1 43.11 ? O6 GTP 602 D 1 HETATM 28 N N1 GTP . . . T 3 -31.659 58.275 46.771 1 40.66 ? N1 GTP 602 D 1 HETATM 29 C C2 GTP . . . T 3 -30.883 57.134 46.821 1 41.54 ? C2 GTP 602 D 1 HETATM 30 N N2 GTP . . . T 3 -29.829 57.109 47.631 1 34.27 ? N2 GTP 602 D 1 HETATM 31 N N3 GTP . . . T 3 -31.194 56.031 46.037 1 57.4 ? N3 GTP 602 D 1 HETATM 32 C C4 GTP . . . T 3 -32.272 56.057 45.207 1 59.47 ? C4 GTP 602 D 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 48 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #