data_6DHN
#
_model_server_result.job_id            9qIBGL9uiqnhjsHnA-axCQ 
_model_server_result.datetime_utc      '2024-11-30 19:28:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dhn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":602}' 
#
_entry.id    6DHN 
#
_exptl.entry_id    6DHN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.55 
_cell.angle_gamma         90 
_cell.entry_id            6DHN 
_cell.length_a            121.11 
_cell.length_b            98.76 
_cell.length_c            165.64 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DHN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 L N N 
? 3 P N N 
? 3 T N N 
? 3 X N N 
? 3 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 469 A ASN 388 1_555 J O3D NAI . A NAI 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? 
covale ? covale2 C NH2 ARG 346 C ARG 265 1_555 P O1G GTP . C GTP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
covale ? covale3 D NH1 ARG 167 D ARG 86 1_555 V O7N NAI . D NAI 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? 
covale ? covale4 D NH1 ARG 346 D ARG 265 1_555 T O2G GTP . D GTP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? 
covale ? covale5 E NH2 ARG 346 E ARG 265 1_555 X O2G GTP . E GTP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6DHN 
_atom_sites.fract_transf_matrix[1][1]    0.008257 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001687 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010126 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006162 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 GLU A 1 601 601 GLU GLU . 
H 3 GTP A 1 602 602 GTP GTP . 
I 4 NAI A 1 603 603 NAI NAI . 
J 4 NAI A 1 604 604 NAI NAI . 
K 2 GLU B 1 601 601 GLU GLU . 
L 3 GTP B 1 602 602 GTP GTP . 
M 4 NAI B 1 603 603 NAI NAI . 
N 4 NAI B 1 604 605 NAI NAI . 
O 2 GLU C 1 601 601 GLU GLU . 
P 3 GTP C 1 602 602 GTP GTP . 
Q 4 NAI C 1 603 603 NAI NAI . 
R 4 NAI C 1 604 604 NAI NAI . 
S 2 GLU D 1 601 601 GLU GLU . 
T 3 GTP D 1 602 602 GTP GTP . 
U 4 NAI D 1 603 603 NAI NAI . 
V 4 NAI D 1 604 604 NAI NAI . 
W 2 GLU E 1 601 601 GLU GLU . 
X 3 GTP E 1 602 602 GTP GTP . 
Y 4 NAI E 1 603 603 NAI NAI . 
Z 4 NAI F 1 601 605 NAI NAI . 
AA 2 GLU F 1 602 601 GLU GLU . 
BA 4 NAI F 1 603 602 NAI NAI . 
CA 3 GTP F 1 604 603 GTP GTP . 
DA 4 NAI F 1 605 604 NAI NAI . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . X 3 -38.853 10.222 48.247 1 90.21 ? PG GTP 602 E 1 
HETATM 2 O O1G GTP . . . X 3 -38.433 10.523 46.83 1 84.82 ? O1G GTP 602 E 1 
HETATM 3 O O2G GTP . . . X 3 -39.323 8.79 48.39 1 82.09 -1 O2G GTP 602 E 1 
HETATM 4 O O3G GTP . . . X 3 -37.643 10.398 49.125 1 66.45 ? O3G GTP 602 E 1 
HETATM 5 O O3B GTP . . . X 3 -40.056 11.196 48.722 1 91.1 ? O3B GTP 602 E 1 
HETATM 6 P PB GTP . . . X 3 -40.402 12.64 48.078 1 98.09 ? PB GTP 602 E 1 
HETATM 7 O O1B GTP . . . X 3 -41.166 12.521 46.775 1 67.19 ? O1B GTP 602 E 1 
HETATM 8 O O2B GTP . . . X 3 -39.139 13.449 47.886 1 77.47 -1 O2B GTP 602 E 1 
HETATM 9 O O3A GTP . . . X 3 -41.357 13.338 49.18 1 89.61 ? O3A GTP 602 E 1 
HETATM 10 P PA GTP . . . X 3 -41.534 12.791 50.692 1 104.32 ? PA GTP 602 E 1 
HETATM 11 O O1A GTP . . . X 3 -42.018 11.359 50.693 1 86.08 ? O1A GTP 602 E 1 
HETATM 12 O O2A GTP . . . X 3 -42.541 13.663 51.409 1 81.02 -1 O2A GTP 602 E 1 
HETATM 13 O O5' GTP . . . X 3 -40.087 12.896 51.418 1 102.73 ? O5' GTP 602 E 1 
HETATM 14 C C5' GTP . . . X 3 -39.434 14.109 51.758 1 95.63 ? C5' GTP 602 E 1 
HETATM 15 C C4' GTP . . . X 3 -37.913 13.942 51.711 1 60.45 ? C4' GTP 602 E 1 
HETATM 16 O O4' GTP . . . X 3 -37.49 13.227 52.858 1 67.53 ? O4' GTP 602 E 1 
HETATM 17 C C3' GTP . . . X 3 -37.45 13.119 50.523 1 67.45 ? C3' GTP 602 E 1 
HETATM 18 O O3' GTP . . . X 3 -37.087 13.913 49.413 1 56.07 ? O3' GTP 602 E 1 
HETATM 19 C C2' GTP . . . X 3 -36.305 12.277 51.07 1 75.56 ? C2' GTP 602 E 1 
HETATM 20 O O2' GTP . . . X 3 -35.043 12.878 50.892 1 70.56 ? O2' GTP 602 E 1 
HETATM 21 C C1' GTP . . . X 3 -36.608 12.157 52.551 1 82.1 ? C1' GTP 602 E 1 
HETATM 22 N N9 GTP . . . X 3 -37.294 10.863 52.794 1 97.48 ? N9 GTP 602 E 1 
HETATM 23 C C8 GTP . . . X 3 -38.649 10.682 52.683 1 85.61 ? C8 GTP 602 E 1 
HETATM 24 N N7 GTP . . . X 3 -38.959 9.401 52.971 1 86.51 ? N7 GTP 602 E 1 
HETATM 25 C C5 GTP . . . X 3 -37.822 8.742 53.277 1 87.4 ? C5 GTP 602 E 1 
HETATM 26 C C6 GTP . . . X 3 -37.6 7.418 53.645 1 85.92 ? C6 GTP 602 E 1 
HETATM 27 O O6 GTP . . . X 3 -38.545 6.631 53.733 1 78.08 ? O6 GTP 602 E 1 
HETATM 28 N N1 GTP . . . X 3 -36.316 6.991 53.91 1 83.9 ? N1 GTP 602 E 1 
HETATM 29 C C2 GTP . . . X 3 -35.265 7.881 53.81 1 80.59 ? C2 GTP 602 E 1 
HETATM 30 N N2 GTP . . . X 3 -34.032 7.452 54.07 1 67.79 ? N2 GTP 602 E 1 
HETATM 31 N N3 GTP . . . X 3 -35.494 9.201 53.442 1 87.02 ? N3 GTP 602 E 1 
HETATM 32 C C4 GTP . . . X 3 -36.758 9.64 53.176 1 94.04 ? C4 GTP 602 E 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           46 
_model_server_stats.create_model_time_ms    129 
_model_server_stats.query_time_ms           1077 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           32 
#