data_6DHN
#
_model_server_result.job_id            wsChXtivZs6mWV4HlacOXQ 
_model_server_result.datetime_utc      '2024-10-19 20:03:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dhn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":603}' 
#
_entry.id    6DHN 
#
_exptl.entry_id    6DHN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              665.441 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.55 
_cell.angle_gamma         90 
_cell.entry_id            6DHN 
_cell.length_a            121.11 
_cell.length_b            98.76 
_cell.length_c            165.64 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DHN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 J N N 
? 4 M N N 
? 4 N N N 
? 4 Q N N 
? 4 R N N 
? 4 U N N 
? 4 V N N 
? 4 Y N N 
? 4 Z N N 
? 4 BA N N 
? 4 DA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 469 A ASN 388 1_555 J O3D NAI . A NAI 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? 
covale ? covale2 C NH2 ARG 346 C ARG 265 1_555 P O1G GTP . C GTP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
covale ? covale3 D NH1 ARG 167 D ARG 86 1_555 V O7N NAI . D NAI 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? 
covale ? covale4 D NH1 ARG 346 D ARG 265 1_555 T O2G GTP . D GTP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? 
covale ? covale5 E NH2 ARG 346 E ARG 265 1_555 X O2G GTP . E GTP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
#
_chem_comp.formula           'C21 H29 N7 O14 P2' 
_chem_comp.formula_weight    665.441 
_chem_comp.id                NAI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     NADH 
#
_atom_sites.entry_id                     6DHN 
_atom_sites.fract_transf_matrix[1][1]    0.008257 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001687 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010126 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006162 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 GLU A 1 601 601 GLU GLU . 
H 3 GTP A 1 602 602 GTP GTP . 
I 4 NAI A 1 603 603 NAI NAI . 
J 4 NAI A 1 604 604 NAI NAI . 
K 2 GLU B 1 601 601 GLU GLU . 
L 3 GTP B 1 602 602 GTP GTP . 
M 4 NAI B 1 603 603 NAI NAI . 
N 4 NAI B 1 604 605 NAI NAI . 
O 2 GLU C 1 601 601 GLU GLU . 
P 3 GTP C 1 602 602 GTP GTP . 
Q 4 NAI C 1 603 603 NAI NAI . 
R 4 NAI C 1 604 604 NAI NAI . 
S 2 GLU D 1 601 601 GLU GLU . 
T 3 GTP D 1 602 602 GTP GTP . 
U 4 NAI D 1 603 603 NAI NAI . 
V 4 NAI D 1 604 604 NAI NAI . 
W 2 GLU E 1 601 601 GLU GLU . 
X 3 GTP E 1 602 602 GTP GTP . 
Y 4 NAI E 1 603 603 NAI NAI . 
Z 4 NAI F 1 601 605 NAI NAI . 
AA 2 GLU F 1 602 601 GLU GLU . 
BA 4 NAI F 1 603 602 NAI NAI . 
CA 3 GTP F 1 604 603 GTP GTP . 
DA 4 NAI F 1 605 604 NAI NAI . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAI . . . M 4 22.707 2.076 28.313 1 14.61 ? PA NAI 603 B 1 
HETATM 2 O O1A NAI . . . M 4 21.205 2.213 28.42 1 9.92 -1 O1A NAI 603 B 1 
HETATM 3 O O2A NAI . . . M 4 23.158 2.861 27.104 1 19.71 ? O2A NAI 603 B 1 
HETATM 4 O O5B NAI . . . M 4 23.214 0.485 28.241 1 23.59 ? O5B NAI 603 B 1 
HETATM 5 C C5B NAI . . . M 4 22.608 -0.513 27.446 1 26.77 ? C5B NAI 603 B 1 
HETATM 6 C C4B NAI . . . M 4 23.572 -1.052 26.331 1 41.18 ? C4B NAI 603 B 1 
HETATM 7 O O4B NAI . . . M 4 24.143 -2.174 26.701 1 31.46 ? O4B NAI 603 B 1 
HETATM 8 C C3B NAI . . . M 4 22.782 -1.37 25.029 1 44.52 ? C3B NAI 603 B 1 
HETATM 9 O O3B NAI . . . M 4 23.418 -1.002 23.878 1 30.15 ? O3B NAI 603 B 1 
HETATM 10 C C2B NAI . . . M 4 22.609 -2.896 25.006 1 32.93 ? C2B NAI 603 B 1 
HETATM 11 O O2B NAI . . . M 4 22.842 -3.339 23.59 1 10.7 ? O2B NAI 603 B 1 
HETATM 12 C C1B NAI . . . M 4 23.452 -3.399 25.892 1 36.99 ? C1B NAI 603 B 1 
HETATM 13 N N9A NAI . . . M 4 22.719 -4.236 26.82 1 30.88 ? N9A NAI 603 B 1 
HETATM 14 C C8A NAI . . . M 4 21.615 -3.846 27.456 1 27.99 ? C8A NAI 603 B 1 
HETATM 15 N N7A NAI . . . M 4 21.186 -4.857 28.212 1 31.25 ? N7A NAI 603 B 1 
HETATM 16 C C5A NAI . . . M 4 22.019 -5.89 28.048 1 30.08 ? C5A NAI 603 B 1 
HETATM 17 C C6A NAI . . . M 4 22.042 -7.165 28.585 1 37.92 ? C6A NAI 603 B 1 
HETATM 18 N N6A NAI . . . M 4 21.158 -7.826 29.529 1 35.36 ? N6A NAI 603 B 1 
HETATM 19 N N1A NAI . . . M 4 23 -8.018 28.262 1 33.55 ? N1A NAI 603 B 1 
HETATM 20 C C2A NAI . . . M 4 23.959 -7.635 27.395 1 32.68 ? C2A NAI 603 B 1 
HETATM 21 N N3A NAI . . . M 4 23.929 -6.384 26.88 1 34.1 ? N3A NAI 603 B 1 
HETATM 22 C C4A NAI . . . M 4 22.965 -5.508 27.193 1 26.16 ? C4A NAI 603 B 1 
HETATM 23 O O3 NAI . . . M 4 23.468 2.743 29.617 1 21.42 ? O3 NAI 603 B 1 
HETATM 24 P PN NAI . . . M 4 22.889 2.78 31.162 1 20.75 ? PN NAI 603 B 1 
HETATM 25 O O1N NAI . . . M 4 21.389 2.897 31.095 1 23.56 -1 O1N NAI 603 B 1 
HETATM 26 O O2N NAI . . . M 4 23.436 4.021 31.822 1 15.06 ? O2N NAI 603 B 1 
HETATM 27 O O5D NAI . . . M 4 23.363 1.444 32.036 1 17.61 ? O5D NAI 603 B 1 
HETATM 28 C C5D NAI . . . M 4 22.482 0.406 32.398 1 13.53 ? C5D NAI 603 B 1 
HETATM 29 C C4D NAI . . . M 4 22.574 0.123 33.927 1 14.56 ? C4D NAI 603 B 1 
HETATM 30 O O4D NAI . . . M 4 23.274 1.071 34.499 1 12.91 ? O4D NAI 603 B 1 
HETATM 31 C C3D NAI . . . M 4 21.169 0.168 34.579 1 16.66 ? C3D NAI 603 B 1 
HETATM 32 O O3D NAI . . . M 4 21.018 -0.791 35.536 1 14.85 ? O3D NAI 603 B 1 
HETATM 33 C C2D NAI . . . M 4 21.121 1.592 35.168 1 13.17 ? C2D NAI 603 B 1 
HETATM 34 O O2D NAI . . . M 4 20.14 1.752 36.284 1 13.05 ? O2D NAI 603 B 1 
HETATM 35 C C1D NAI . . . M 4 22.325 1.737 35.624 1 12.06 ? C1D NAI 603 B 1 
HETATM 36 N N1N NAI . . . M 4 22.607 3.126 35.91 1 13.65 ? N1N NAI 603 B 1 
HETATM 37 C C2N NAI . . . M 4 22.647 4.209 34.929 1 13.02 ? C2N NAI 603 B 1 
HETATM 38 C C3N NAI . . . M 4 23.068 5.625 35.37 1 10.45 ? C3N NAI 603 B 1 
HETATM 39 C C7N NAI . . . M 4 23.293 6.804 34.414 1 14.74 ? C7N NAI 603 B 1 
HETATM 40 O O7N NAI . . . M 4 23.751 7.798 34.877 1 13.09 ? O7N NAI 603 B 1 
HETATM 41 N N7N NAI . . . M 4 22.988 6.758 32.99 1 17.34 ? N7N NAI 603 B 1 
HETATM 42 C C4N NAI . . . M 4 23.747 5.83 36.721 1 13.55 ? C4N NAI 603 B 1 
HETATM 43 C C5N NAI . . . M 4 23.827 4.577 37.583 1 16.85 ? C5N NAI 603 B 1 
HETATM 44 C C6N NAI . . . M 4 22.852 3.45 37.291 1 16.59 ? C6N NAI 603 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    136 
_model_server_stats.query_time_ms           448 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           44 
#