data_6DHN
#
_model_server_result.job_id            '_eJqITxFTlSbiFP3h5MQLg' 
_model_server_result.datetime_utc      '2024-11-30 19:33:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dhn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":603}' 
#
_entry.id    6DHN 
#
_exptl.entry_id    6DHN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              665.441 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.55 
_cell.angle_gamma         90 
_cell.entry_id            6DHN 
_cell.length_a            121.11 
_cell.length_b            98.76 
_cell.length_c            165.64 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DHN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 J N N 
? 4 M N N 
? 4 N N N 
? 4 Q N N 
? 4 R N N 
? 4 U N N 
? 4 V N N 
? 4 Y N N 
? 4 Z N N 
? 4 BA N N 
? 4 DA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 469 A ASN 388 1_555 J O3D NAI . A NAI 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? 
covale ? covale2 C NH2 ARG 346 C ARG 265 1_555 P O1G GTP . C GTP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
covale ? covale3 D NH1 ARG 167 D ARG 86 1_555 V O7N NAI . D NAI 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? 
covale ? covale4 D NH1 ARG 346 D ARG 265 1_555 T O2G GTP . D GTP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? 
covale ? covale5 E NH2 ARG 346 E ARG 265 1_555 X O2G GTP . E GTP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
#
_chem_comp.formula           'C21 H29 N7 O14 P2' 
_chem_comp.formula_weight    665.441 
_chem_comp.id                NAI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     NADH 
#
_atom_sites.entry_id                     6DHN 
_atom_sites.fract_transf_matrix[1][1]    0.008257 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001687 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010126 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006162 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 GLU A 1 601 601 GLU GLU . 
H 3 GTP A 1 602 602 GTP GTP . 
I 4 NAI A 1 603 603 NAI NAI . 
J 4 NAI A 1 604 604 NAI NAI . 
K 2 GLU B 1 601 601 GLU GLU . 
L 3 GTP B 1 602 602 GTP GTP . 
M 4 NAI B 1 603 603 NAI NAI . 
N 4 NAI B 1 604 605 NAI NAI . 
O 2 GLU C 1 601 601 GLU GLU . 
P 3 GTP C 1 602 602 GTP GTP . 
Q 4 NAI C 1 603 603 NAI NAI . 
R 4 NAI C 1 604 604 NAI NAI . 
S 2 GLU D 1 601 601 GLU GLU . 
T 3 GTP D 1 602 602 GTP GTP . 
U 4 NAI D 1 603 603 NAI NAI . 
V 4 NAI D 1 604 604 NAI NAI . 
W 2 GLU E 1 601 601 GLU GLU . 
X 3 GTP E 1 602 602 GTP GTP . 
Y 4 NAI E 1 603 603 NAI NAI . 
Z 4 NAI F 1 601 605 NAI NAI . 
AA 2 GLU F 1 602 601 GLU GLU . 
BA 4 NAI F 1 603 602 NAI NAI . 
CA 3 GTP F 1 604 603 GTP GTP . 
DA 4 NAI F 1 605 604 NAI NAI . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAI . . . Q 4 24.934 43.281 56.018 1 83.48 ? PA NAI 603 C 1 
HETATM 2 O O1A NAI . . . Q 4 26.432 43.068 55.947 1 62.71 -1 O1A NAI 603 C 1 
HETATM 3 O O2A NAI . . . Q 4 24.451 42.786 57.366 1 55.29 ? O2A NAI 603 C 1 
HETATM 4 O O5B NAI . . . Q 4 24.616 44.896 55.884 0 56.33 ? O5B NAI 603 C 1 
HETATM 5 C C5B NAI . . . Q 4 24.771 45.52 54.64 0 53 ? C5B NAI 603 C 1 
HETATM 6 C C4B NAI . . . Q 4 23.749 46.685 54.479 1 46.17 ? C4B NAI 603 C 1 
HETATM 7 O O4B NAI . . . Q 4 22.562 46.359 54.932 1 49.31 ? O4B NAI 603 C 1 
HETATM 8 C C3B NAI . . . Q 4 24.212 47.922 55.276 1 53.44 ? C3B NAI 603 C 1 
HETATM 9 O O3B NAI . . . Q 4 24.622 48.89 54.418 0 52.16 ? O3B NAI 603 C 1 
HETATM 10 C C2B NAI . . . Q 4 22.962 48.383 56.056 1 61.51 ? C2B NAI 603 C 1 
HETATM 11 O O2B NAI . . . Q 4 22.238 49.389 55.22 1 55.42 ? O2B NAI 603 C 1 
HETATM 12 C C1B NAI . . . Q 4 22.196 47.33 56.177 1 57.69 ? C1B NAI 603 C 1 
HETATM 13 N N9A NAI . . . Q 4 22.346 46.534 57.38 0 55.85 ? N9A NAI 603 C 1 
HETATM 14 C C8A NAI . . . Q 4 23.442 46.315 58.118 0.03 56.07 ? C8A NAI 603 C 1 
HETATM 15 N N7A NAI . . . Q 4 23.124 45.48 59.117 1 54.84 ? N7A NAI 603 C 1 
HETATM 16 C C5A NAI . . . Q 4 21.822 45.178 58.996 1 62.98 ? C5A NAI 603 C 1 
HETATM 17 C C6A NAI . . . Q 4 20.965 44.381 59.731 1 59.5 ? C6A NAI 603 C 1 
HETATM 18 N N6A NAI . . . Q 4 21.18 43.578 60.92 0 46.06 ? N6A NAI 603 C 1 
HETATM 19 N N1A NAI . . . Q 4 19.696 44.258 59.38 1 57.62 ? N1A NAI 603 C 1 
HETATM 20 C C2A NAI . . . Q 4 19.23 44.917 58.298 1 48.98 ? C2A NAI 603 C 1 
HETATM 21 N N3A NAI . . . Q 4 20.066 45.699 57.582 1 51.08 ? N3A NAI 603 C 1 
HETATM 22 C C4A NAI . . . Q 4 21.355 45.822 57.926 1 59.96 ? C4A NAI 603 C 1 
HETATM 23 O O3 NAI . . . Q 4 24.215 42.466 54.762 1 63.21 ? O3 NAI 603 C 1 
HETATM 24 P PN NAI . . . Q 4 22.611 42.299 54.359 0 40.11 ? PN NAI 603 C 1 
HETATM 25 O O1N NAI . . . Q 4 22.383 42.813 52.952 1 17.41 -1 O1N NAI 603 C 1 
HETATM 26 O O2N NAI . . . Q 4 21.726 43.088 55.301 1 47.67 ? O2N NAI 603 C 1 
HETATM 27 O O5D NAI . . . Q 4 22.226 40.683 54.399 0.64 32.46 ? O5D NAI 603 C 1 
HETATM 28 C C5D NAI . . . Q 4 21.035 40.221 53.804 0 28.36 ? C5D NAI 603 C 1 
HETATM 29 C C4D NAI . . . Q 4 21.253 38.903 52.999 1 24.3 ? C4D NAI 603 C 1 
HETATM 30 O O4D NAI . . . Q 4 20.148 38.197 52.939 1 22 ? O4D NAI 603 C 1 
HETATM 31 C C3D NAI . . . Q 4 21.545 39.248 51.528 1 29.5 ? C3D NAI 603 C 1 
HETATM 32 O O3D NAI . . . Q 4 22.248 38.253 50.931 0 24.91 ? O3D NAI 603 C 1 
HETATM 33 C C2D NAI . . . Q 4 20.151 39.321 50.895 0 23.39 ? C2D NAI 603 C 1 
HETATM 34 O O2D NAI . . . Q 4 20.284 39.221 49.41 0 22.1 ? O2D NAI 603 C 1 
HETATM 35 C C1D NAI . . . Q 4 19.614 38.248 51.4 0 23.85 ? C1D NAI 603 C 1 
HETATM 36 N N1N NAI . . . Q 4 18.169 38.243 51.334 1 27.88 ? N1N NAI 603 C 1 
HETATM 37 C C2N NAI . . . Q 4 17.446 38.82 50.22 1 19.52 ? C2N NAI 603 C 1 
HETATM 38 C C3N NAI . . . Q 4 16.129 39.514 50.538 1 25.46 ? C3N NAI 603 C 1 
HETATM 39 C C7N NAI . . . Q 4 16.128 41.044 50.513 0 20.33 ? C7N NAI 603 C 1 
HETATM 40 O O7N NAI . . . Q 4 16.602 41.614 49.588 0 20.83 ? O7N NAI 603 C 1 
HETATM 41 N N7N NAI . . . Q 4 15.569 41.803 51.62 1 7.94 ? N7N NAI 603 C 1 
HETATM 42 C C4N NAI . . . Q 4 15.171 38.794 51.488 0 22.11 ? C4N NAI 603 C 1 
HETATM 43 C C5N NAI . . . Q 4 15.887 37.869 52.479 0 21.27 ? C5N NAI 603 C 1 
HETATM 44 C C6N NAI . . . Q 4 17.399 37.639 52.401 0 22.48 ? C6N NAI 603 C 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           44 
#