data_6DHN # _model_server_result.job_id XjJyaoToYEGSs7vkJySUtw _model_server_result.datetime_utc '2024-11-30 19:22:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dhn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":605}' # _entry.id 6DHN # _exptl.entry_id 6DHN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.55 _cell.angle_gamma 90 _cell.entry_id 6DHN _cell.length_a 121.11 _cell.length_b 98.76 _cell.length_c 165.64 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DHN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 J N N ? 4 M N N ? 4 N N N ? 4 Q N N ? 4 R N N ? 4 U N N ? 4 V N N ? 4 Y N N ? 4 Z N N ? 4 BA N N ? 4 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 469 A ASN 388 1_555 J O3D NAI . A NAI 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? covale ? covale2 C NH2 ARG 346 C ARG 265 1_555 P O1G GTP . C GTP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? covale ? covale3 D NH1 ARG 167 D ARG 86 1_555 V O7N NAI . D NAI 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? covale ? covale4 D NH1 ARG 346 D ARG 265 1_555 T O2G GTP . D GTP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? covale ? covale5 E NH2 ARG 346 E ARG 265 1_555 X O2G GTP . E GTP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # _atom_sites.entry_id 6DHN _atom_sites.fract_transf_matrix[1][1] 0.008257 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001687 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010126 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006162 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 GLU A 1 601 601 GLU GLU . H 3 GTP A 1 602 602 GTP GTP . I 4 NAI A 1 603 603 NAI NAI . J 4 NAI A 1 604 604 NAI NAI . K 2 GLU B 1 601 601 GLU GLU . L 3 GTP B 1 602 602 GTP GTP . M 4 NAI B 1 603 603 NAI NAI . N 4 NAI B 1 604 605 NAI NAI . O 2 GLU C 1 601 601 GLU GLU . P 3 GTP C 1 602 602 GTP GTP . Q 4 NAI C 1 603 603 NAI NAI . R 4 NAI C 1 604 604 NAI NAI . S 2 GLU D 1 601 601 GLU GLU . T 3 GTP D 1 602 602 GTP GTP . U 4 NAI D 1 603 603 NAI NAI . V 4 NAI D 1 604 604 NAI NAI . W 2 GLU E 1 601 601 GLU GLU . X 3 GTP E 1 602 602 GTP GTP . Y 4 NAI E 1 603 603 NAI NAI . Z 4 NAI F 1 601 605 NAI NAI . AA 2 GLU F 1 602 601 GLU GLU . BA 4 NAI F 1 603 602 NAI NAI . CA 3 GTP F 1 604 603 GTP GTP . DA 4 NAI F 1 605 604 NAI NAI . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . DA 4 -13.387 33.873 5.924 1 26.63 ? PA NAI 605 F 1 HETATM 2 O O1A NAI . . . DA 4 -12.052 34.234 6.542 1 14.93 -1 O1A NAI 605 F 1 HETATM 3 O O2A NAI . . . DA 4 -13.449 32.369 5.779 1 37.75 ? O2A NAI 605 F 1 HETATM 4 O O5B NAI . . . DA 4 -13.71 34.634 4.462 1 38.44 ? O5B NAI 605 F 1 HETATM 5 C C5B NAI . . . DA 4 -12.785 34.886 3.418 1 30.99 ? C5B NAI 605 F 1 HETATM 6 C C4B NAI . . . DA 4 -13.266 34.377 2.01 1 37.47 ? C4B NAI 605 F 1 HETATM 7 O O4B NAI . . . DA 4 -13.413 35.348 1.133 1 33.09 ? O4B NAI 605 F 1 HETATM 8 C C3B NAI . . . DA 4 -12.17 33.46 1.415 1 47.39 ? C3B NAI 605 F 1 HETATM 9 O O3B NAI . . . DA 4 -12.666 32.417 0.698 1 35.89 ? O3B NAI 605 F 1 HETATM 10 C C2B NAI . . . DA 4 -11.321 34.393 0.527 1 33.51 ? C2B NAI 605 F 1 HETATM 11 O O2B NAI . . . DA 4 -10.743 33.66 -0.641 1 12.72 ? O2B NAI 605 F 1 HETATM 12 C C1B NAI . . . DA 4 -12.095 35.396 0.18 1 36.51 ? C1B NAI 605 F 1 HETATM 13 N N9A NAI . . . DA 4 -11.37 36.615 0.452 1 45.24 ? N9A NAI 605 F 1 HETATM 14 C C8A NAI . . . DA 4 -10.29 36.655 1.238 1 46.76 ? C8A NAI 605 F 1 HETATM 15 N N7A NAI . . . DA 4 -9.849 37.91 1.303 1 41.73 ? N7A NAI 605 F 1 HETATM 16 C C5A NAI . . . DA 4 -10.659 38.661 0.555 1 39.71 ? C5A NAI 605 F 1 HETATM 17 C C6A NAI . . . DA 4 -10.64 40.009 0.29 1 36.76 ? C6A NAI 605 F 1 HETATM 18 N N6A NAI . . . DA 4 -9.73 41.044 0.746 1 44.11 ? N6A NAI 605 F 1 HETATM 19 N N1A NAI . . . DA 4 -11.557 40.544 -0.495 1 32.66 ? N1A NAI 605 F 1 HETATM 20 C C2A NAI . . . DA 4 -12.515 39.753 -1.035 1 39.04 ? C2A NAI 605 F 1 HETATM 21 N N3A NAI . . . DA 4 -12.539 38.422 -0.773 1 40.55 ? N3A NAI 605 F 1 HETATM 22 C C4A NAI . . . DA 4 -11.604 37.874 0.026 1 41.82 ? C4A NAI 605 F 1 HETATM 23 O O3 NAI . . . DA 4 -14.599 34.288 6.961 1 22.07 ? O3 NAI 605 F 1 HETATM 24 P PN NAI . . . DA 4 -14.361 35.403 8.139 1 28.43 ? PN NAI 605 F 1 HETATM 25 O O1N NAI . . . DA 4 -12.87 35.542 8.272 1 34.14 -1 O1N NAI 605 F 1 HETATM 26 O O2N NAI . . . DA 4 -14.951 34.964 9.461 1 24.76 ? O2N NAI 605 F 1 HETATM 27 O O5D NAI . . . DA 4 -14.97 36.859 7.67 1 22.84 ? O5D NAI 605 F 1 HETATM 28 C C5D NAI . . . DA 4 -14.03 37.863 7.423 1 20.15 ? C5D NAI 605 F 1 HETATM 29 C C4D NAI . . . DA 4 -14.374 39.074 8.318 1 20.5 ? C4D NAI 605 F 1 HETATM 30 O O4D NAI . . . DA 4 -15.549 38.909 8.856 1 19.78 ? O4D NAI 605 F 1 HETATM 31 C C3D NAI . . . DA 4 -13.492 39.153 9.574 1 25.4 ? C3D NAI 605 F 1 HETATM 32 O O3D NAI . . . DA 4 -12.274 39.678 9.333 1 34.27 ? O3D NAI 605 F 1 HETATM 33 C C2D NAI . . . DA 4 -14.276 40.209 10.346 1 25.2 ? C2D NAI 605 F 1 HETATM 34 O O2D NAI . . . DA 4 -14.042 41.518 9.674 1 24.58 ? O2D NAI 605 F 1 HETATM 35 C C1D NAI . . . DA 4 -15.51 39.822 10.199 1 25.9 ? C1D NAI 605 F 1 HETATM 36 N N1N NAI . . . DA 4 -15.886 39.162 11.43 1 27.65 ? N1N NAI 605 F 1 HETATM 37 C C2N NAI . . . DA 4 -15.832 37.728 11.664 1 23.47 ? C2N NAI 605 F 1 HETATM 38 C C3N NAI . . . DA 4 -16.71 37.105 12.752 1 15.32 ? C3N NAI 605 F 1 HETATM 39 C C7N NAI . . . DA 4 -16.476 35.665 13.184 1 15.37 ? C7N NAI 605 F 1 HETATM 40 O O7N NAI . . . DA 4 -15.92 35.454 14.206 1 15.6 ? O7N NAI 605 F 1 HETATM 41 N N7N NAI . . . DA 4 -16.945 34.565 12.364 1 24.39 ? N7N NAI 605 F 1 HETATM 42 C C4N NAI . . . DA 4 -17.495 37.981 13.727 1 19.08 ? C4N NAI 605 F 1 HETATM 43 C C5N NAI . . . DA 4 -17.373 39.48 13.473 1 22.21 ? C5N NAI 605 F 1 HETATM 44 C C6N NAI . . . DA 4 -16.311 40.006 12.519 1 24.51 ? C6N NAI 605 F 1 # _model_server_stats.io_time_ms 289 _model_server_stats.parse_time_ms 822 _model_server_stats.create_model_time_ms 257 _model_server_stats.query_time_ms 928 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 44 #