data_6DI3 # _model_server_result.job_id NuNCzmAQkg7j01Zxa0j11A _model_server_result.datetime_utc '2024-11-22 05:24:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6di3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6DI3 # _exptl.entry_id 6DI3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 444.482 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[(3S)-3-(acryloylamino)pyrrolidin-1-yl]-2-(4-phenoxyphenoxy)pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DI3 _cell.length_a 71.1 _cell.length_b 104.96 _cell.length_c 38.08 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DI3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H24 N4 O4' _chem_comp.formula_weight 444.482 _chem_comp.id GJA _chem_comp.mon_nstd_flag . _chem_comp.name 6-[(3S)-3-(acryloylamino)pyrrolidin-1-yl]-2-(4-phenoxyphenoxy)pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O16 C15 GJA doub 83 n n C4 C5 GJA doub 84 n y C4 C3 GJA sing 85 n y C5 C6 GJA sing 86 n y C26 C25 GJA doub 87 n n O24 C23 GJA doub 88 n n C15 C3 GJA sing 89 n n C15 N17 GJA sing 90 n n C3 C2 GJA doub 91 n y C20 C19 GJA sing 92 n n C20 N7 GJA sing 93 n n C23 C25 GJA sing 94 n n C23 N21 GJA sing 95 n n C6 N7 GJA sing 96 n n C6 N1 GJA doub 97 n y C19 N21 GJA sing 98 n n C19 C22 GJA sing 99 n n N7 C18 GJA sing 100 n n C2 N1 GJA sing 101 n y C2 O8 GJA sing 102 n n O8 C9 GJA sing 103 n n C18 C22 GJA sing 104 n n C9 C10 GJA doub 105 n y C9 C14 GJA sing 106 n y C10 C11 GJA sing 107 n y C14 C13 GJA doub 108 n y C11 C12 GJA doub 109 n y C13 C12 GJA sing 110 n y C12 O27 GJA sing 111 n n C33 C32 GJA doub 112 n y C33 C28 GJA sing 113 n y O27 C28 GJA sing 114 n n C32 C31 GJA sing 115 n y C28 C29 GJA doub 116 n y C31 C30 GJA doub 117 n y C29 C30 GJA sing 118 n y C10 H1 GJA sing 119 n n C11 H2 GJA sing 120 n n C13 H3 GJA sing 121 n n C14 H4 GJA sing 122 n n C19 H5 GJA sing 123 n n C20 H6 GJA sing 124 n n C20 H7 GJA sing 125 n n C22 H8 GJA sing 126 n n C22 H9 GJA sing 127 n n C30 H10 GJA sing 128 n n C31 H11 GJA sing 129 n n C32 H12 GJA sing 130 n n C33 H13 GJA sing 131 n n C4 H14 GJA sing 132 n n C5 H15 GJA sing 133 n n N17 H16 GJA sing 134 n n N17 H17 GJA sing 135 n n C18 H18 GJA sing 136 n n C18 H19 GJA sing 137 n n N21 H20 GJA sing 138 n n C25 H21 GJA sing 139 n n C26 H22 GJA sing 140 n n C26 H23 GJA sing 141 n n C29 H24 GJA sing 142 n n # _atom_sites.entry_id 6DI3 _atom_sites.fract_transf_matrix[1][1] 0.014065 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026261 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GJA A 1 701 0 GJA INH . C 3 HOH A 1 801 56 HOH HOH . C 3 HOH A 2 802 28 HOH HOH . C 3 HOH A 3 803 103 HOH HOH . C 3 HOH A 4 804 90 HOH HOH . C 3 HOH A 5 805 114 HOH HOH . C 3 HOH A 6 806 110 HOH HOH . C 3 HOH A 7 807 115 HOH HOH . C 3 HOH A 8 808 97 HOH HOH . C 3 HOH A 9 809 42 HOH HOH . C 3 HOH A 10 810 111 HOH HOH . C 3 HOH A 11 811 96 HOH HOH . C 3 HOH A 12 812 44 HOH HOH . C 3 HOH A 13 813 86 HOH HOH . C 3 HOH A 14 814 112 HOH HOH . C 3 HOH A 15 815 61 HOH HOH . C 3 HOH A 16 816 31 HOH HOH . C 3 HOH A 17 817 102 HOH HOH . C 3 HOH A 18 818 105 HOH HOH . C 3 HOH A 19 819 106 HOH HOH . C 3 HOH A 20 820 70 HOH HOH . C 3 HOH A 21 821 85 HOH HOH . C 3 HOH A 22 822 76 HOH HOH . C 3 HOH A 23 823 6 HOH HOH . C 3 HOH A 24 824 8 HOH HOH . C 3 HOH A 25 825 33 HOH HOH . C 3 HOH A 26 826 22 HOH HOH . C 3 HOH A 27 827 87 HOH HOH . C 3 HOH A 28 828 7 HOH HOH . C 3 HOH A 29 829 94 HOH HOH . C 3 HOH A 30 830 66 HOH HOH . C 3 HOH A 31 831 89 HOH HOH . C 3 HOH A 32 832 52 HOH HOH . C 3 HOH A 33 833 51 HOH HOH . C 3 HOH A 34 834 3 HOH HOH . C 3 HOH A 35 835 59 HOH HOH . C 3 HOH A 36 836 1 HOH HOH . C 3 HOH A 37 837 62 HOH HOH . C 3 HOH A 38 838 14 HOH HOH . C 3 HOH A 39 839 19 HOH HOH . C 3 HOH A 40 840 58 HOH HOH . C 3 HOH A 41 841 109 HOH HOH . C 3 HOH A 42 842 11 HOH HOH . C 3 HOH A 43 843 101 HOH HOH . C 3 HOH A 44 844 20 HOH HOH . C 3 HOH A 45 845 10 HOH HOH . C 3 HOH A 46 846 55 HOH HOH . C 3 HOH A 47 847 38 HOH HOH . C 3 HOH A 48 848 75 HOH HOH . C 3 HOH A 49 849 88 HOH HOH . C 3 HOH A 50 850 39 HOH HOH . C 3 HOH A 51 851 23 HOH HOH . C 3 HOH A 52 852 69 HOH HOH . C 3 HOH A 53 853 108 HOH HOH . C 3 HOH A 54 854 2 HOH HOH . C 3 HOH A 55 855 49 HOH HOH . C 3 HOH A 56 856 9 HOH HOH . C 3 HOH A 57 857 80 HOH HOH . C 3 HOH A 58 858 18 HOH HOH . C 3 HOH A 59 859 15 HOH HOH . C 3 HOH A 60 860 17 HOH HOH . C 3 HOH A 61 861 5 HOH HOH . C 3 HOH A 62 862 72 HOH HOH . C 3 HOH A 63 863 16 HOH HOH . C 3 HOH A 64 864 93 HOH HOH . C 3 HOH A 65 865 34 HOH HOH . C 3 HOH A 66 866 37 HOH HOH . C 3 HOH A 67 867 74 HOH HOH . C 3 HOH A 68 868 26 HOH HOH . C 3 HOH A 69 869 113 HOH HOH . C 3 HOH A 70 870 12 HOH HOH . C 3 HOH A 71 871 83 HOH HOH . C 3 HOH A 72 872 50 HOH HOH . C 3 HOH A 73 873 47 HOH HOH . C 3 HOH A 74 874 21 HOH HOH . C 3 HOH A 75 875 30 HOH HOH . C 3 HOH A 76 876 43 HOH HOH . C 3 HOH A 77 877 116 HOH HOH . C 3 HOH A 78 878 63 HOH HOH . C 3 HOH A 79 879 27 HOH HOH . C 3 HOH A 80 880 13 HOH HOH . C 3 HOH A 81 881 117 HOH HOH . C 3 HOH A 82 882 24 HOH HOH . C 3 HOH A 83 883 100 HOH HOH . C 3 HOH A 84 884 84 HOH HOH . C 3 HOH A 85 885 95 HOH HOH . C 3 HOH A 86 886 79 HOH HOH . C 3 HOH A 87 887 64 HOH HOH . C 3 HOH A 88 888 91 HOH HOH . C 3 HOH A 89 889 60 HOH HOH . C 3 HOH A 90 890 57 HOH HOH . C 3 HOH A 91 891 78 HOH HOH . C 3 HOH A 92 892 68 HOH HOH . C 3 HOH A 93 893 67 HOH HOH . C 3 HOH A 94 894 29 HOH HOH . C 3 HOH A 95 895 104 HOH HOH . C 3 HOH A 96 896 81 HOH HOH . C 3 HOH A 97 897 65 HOH HOH . C 3 HOH A 98 898 40 HOH HOH . C 3 HOH A 99 899 41 HOH HOH . C 3 HOH A 100 900 77 HOH HOH . C 3 HOH A 101 901 35 HOH HOH . C 3 HOH A 102 902 92 HOH HOH . C 3 HOH A 103 903 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 GJA . . . B 2 19.493 6.117 2.664 1 42.62 ? C2 GJA 701 A 1 HETATM 2 C C3 GJA . . . B 2 19.2 5.814 1.317 1 39.68 ? C3 GJA 701 A 1 HETATM 3 C C9 GJA . . . B 2 18.619 5.972 4.937 1 46.49 ? C9 GJA 701 A 1 HETATM 4 C C10 GJA . . . B 2 18.736 7.297 5.41 1 42.54 ? C10 GJA 701 A 1 HETATM 5 C C11 GJA . . . B 2 18.673 7.526 6.779 1 43.29 ? C11 GJA 701 A 1 HETATM 6 C C12 GJA . . . B 2 18.458 6.483 7.688 1 45.08 ? C12 GJA 701 A 1 HETATM 7 C C13 GJA . . . B 2 18.327 5.174 7.209 1 45.97 ? C13 GJA 701 A 1 HETATM 8 C C14 GJA . . . B 2 18.401 4.918 5.849 1 46.28 ? C14 GJA 701 A 1 HETATM 9 C C15 GJA . . . B 2 17.978 5.067 0.97 1 34.91 ? C15 GJA 701 A 1 HETATM 10 C C19 GJA . . . B 2 24.142 9.729 2.375 1 54.26 ? C19 GJA 701 A 1 HETATM 11 C C20 GJA . . . B 2 23.083 9.01 1.485 1 50.3 ? C20 GJA 701 A 1 HETATM 12 C C22 GJA . . . B 2 23.892 9.184 3.81 1 53.8 ? C22 GJA 701 A 1 HETATM 13 C C30 GJA . . . B 2 15.945 8.576 11.163 1 52.37 ? C30 GJA 701 A 1 HETATM 14 C C31 GJA . . . B 2 14.82 8.566 10.324 1 52.68 ? C31 GJA 701 A 1 HETATM 15 C C32 GJA . . . B 2 14.86 7.938 9.071 1 49.29 ? C32 GJA 701 A 1 HETATM 16 C C33 GJA . . . B 2 16.036 7.317 8.678 1 49.3 ? C33 GJA 701 A 1 HETATM 17 N N1 GJA . . . B 2 20.574 6.822 2.96 1 44.47 ? N1 GJA 701 A 1 HETATM 18 C C4 GJA . . . B 2 20.07 6.274 0.3 1 39.32 ? C4 GJA 701 A 1 HETATM 19 C C5 GJA . . . B 2 21.166 7.017 0.644 1 43.2 ? C5 GJA 701 A 1 HETATM 20 C C6 GJA . . . B 2 21.38 7.3 2.013 1 46.35 ? C6 GJA 701 A 1 HETATM 21 N N7 GJA . . . B 2 22.508 8.014 2.417 1 50.11 ? N7 GJA 701 A 1 HETATM 22 O O8 GJA . . . B 2 18.658 5.628 3.608 1 43.8 ? O8 GJA 701 A 1 HETATM 23 O O16 GJA . . . B 2 17.898 4.567 -0.108 1 37.13 ? O16 GJA 701 A 1 HETATM 24 N N17 GJA . . . B 2 16.914 4.998 1.796 1 35.49 ? N17 GJA 701 A 1 HETATM 25 C C18 GJA . . . B 2 22.451 8.657 3.752 1 50.5 ? C18 GJA 701 A 1 HETATM 26 N N21 GJA . . . B 2 23.958 11.182 2.401 1 56.91 ? N21 GJA 701 A 1 HETATM 27 C C23 GJA . . . B 2 24.737 12.007 1.65 1 61.22 ? C23 GJA 701 A 1 HETATM 28 O O24 GJA . . . B 2 25.606 11.534 0.919 1 62.74 ? O24 GJA 701 A 1 HETATM 29 C C25 GJA . . . B 2 24.556 13.476 1.722 1 57.84 ? C25 GJA 701 A 1 HETATM 30 C C26 GJA . . . B 2 23.8 14.121 0.839 1 58.93 ? C26 GJA 701 A 1 HETATM 31 O O27 GJA . . . B 2 18.352 6.714 9.054 1 50.08 ? O27 GJA 701 A 1 HETATM 32 C C28 GJA . . . B 2 17.182 7.31 9.499 1 49.03 ? C28 GJA 701 A 1 HETATM 33 C C29 GJA . . . B 2 17.126 7.944 10.741 1 50.18 ? C29 GJA 701 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #