data_6DI9 # _model_server_result.job_id ofjq8CJVc1BRHo2VMUwnFw _model_server_result.datetime_utc '2024-11-04 22:53:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6di9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6DI9 # _exptl.entry_id 6DI9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 450.533 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[(3S)-3-(acryloylamino)pyrrolidin-1-yl]-2-{[4-(tert-butylcarbamoyl)phenyl]amino}pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DI9 _cell.length_a 71.911 _cell.length_b 104.61 _cell.length_c 38.098 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DI9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 93 A CYS 481 1_555 B C33 GJJ . A GJJ 701 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.869 ? covale ? covale2 A SG CYS 93 A CYS 481 1_555 B C33 GJJ . A GJJ 701 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.805 ? # _chem_comp.formula 'C24 H30 N6 O3' _chem_comp.formula_weight 450.533 _chem_comp.id GJJ _chem_comp.mon_nstd_flag . _chem_comp.name 6-[(3S)-3-(acryloylamino)pyrrolidin-1-yl]-2-{[4-(tert-butylcarbamoyl)phenyl]amino}pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6DI9 _atom_sites.fract_transf_matrix[1][1] 0.013906 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009559 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026248 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GJJ A 1 701 1 GJJ INH . C 3 DMS A 1 702 1 DMS DMS . D 4 HOH A 1 801 98 HOH HOH . D 4 HOH A 2 802 155 HOH HOH . D 4 HOH A 3 803 112 HOH HOH . D 4 HOH A 4 804 148 HOH HOH . D 4 HOH A 5 805 134 HOH HOH . D 4 HOH A 6 806 37 HOH HOH . D 4 HOH A 7 807 97 HOH HOH . D 4 HOH A 8 808 67 HOH HOH . D 4 HOH A 9 809 209 HOH HOH . D 4 HOH A 10 810 22 HOH HOH . D 4 HOH A 11 811 77 HOH HOH . D 4 HOH A 12 812 78 HOH HOH . D 4 HOH A 13 813 213 HOH HOH . D 4 HOH A 14 814 124 HOH HOH . D 4 HOH A 15 815 45 HOH HOH . D 4 HOH A 16 816 33 HOH HOH . D 4 HOH A 17 817 47 HOH HOH . D 4 HOH A 18 818 102 HOH HOH . D 4 HOH A 19 819 36 HOH HOH . D 4 HOH A 20 820 133 HOH HOH . D 4 HOH A 21 821 221 HOH HOH . D 4 HOH A 22 822 10 HOH HOH . D 4 HOH A 23 823 59 HOH HOH . D 4 HOH A 24 824 73 HOH HOH . D 4 HOH A 25 825 116 HOH HOH . D 4 HOH A 26 826 39 HOH HOH . D 4 HOH A 27 827 72 HOH HOH . D 4 HOH A 28 828 93 HOH HOH . D 4 HOH A 29 829 86 HOH HOH . D 4 HOH A 30 830 107 HOH HOH . D 4 HOH A 31 831 160 HOH HOH . D 4 HOH A 32 832 63 HOH HOH . D 4 HOH A 33 833 4 HOH HOH . D 4 HOH A 34 834 12 HOH HOH . D 4 HOH A 35 835 15 HOH HOH . D 4 HOH A 36 836 23 HOH HOH . D 4 HOH A 37 837 139 HOH HOH . D 4 HOH A 38 838 95 HOH HOH . D 4 HOH A 39 839 153 HOH HOH . D 4 HOH A 40 840 32 HOH HOH . D 4 HOH A 41 841 84 HOH HOH . D 4 HOH A 42 842 25 HOH HOH . D 4 HOH A 43 843 38 HOH HOH . D 4 HOH A 44 844 14 HOH HOH . D 4 HOH A 45 845 56 HOH HOH . D 4 HOH A 46 846 13 HOH HOH . D 4 HOH A 47 847 19 HOH HOH . D 4 HOH A 48 848 143 HOH HOH . D 4 HOH A 49 849 89 HOH HOH . D 4 HOH A 50 850 144 HOH HOH . D 4 HOH A 51 851 35 HOH HOH . D 4 HOH A 52 852 170 HOH HOH . D 4 HOH A 53 853 165 HOH HOH . D 4 HOH A 54 854 177 HOH HOH . D 4 HOH A 55 855 163 HOH HOH . D 4 HOH A 56 856 159 HOH HOH . D 4 HOH A 57 857 40 HOH HOH . D 4 HOH A 58 858 28 HOH HOH . D 4 HOH A 59 859 105 HOH HOH . D 4 HOH A 60 860 215 HOH HOH . D 4 HOH A 61 861 6 HOH HOH . D 4 HOH A 62 862 48 HOH HOH . D 4 HOH A 63 863 46 HOH HOH . D 4 HOH A 64 864 115 HOH HOH . D 4 HOH A 65 865 220 HOH HOH . D 4 HOH A 66 866 212 HOH HOH . D 4 HOH A 67 867 136 HOH HOH . D 4 HOH A 68 868 42 HOH HOH . D 4 HOH A 69 869 68 HOH HOH . D 4 HOH A 70 870 207 HOH HOH . D 4 HOH A 71 871 113 HOH HOH . D 4 HOH A 72 872 182 HOH HOH . D 4 HOH A 73 873 168 HOH HOH . D 4 HOH A 74 874 87 HOH HOH . D 4 HOH A 75 875 197 HOH HOH . D 4 HOH A 76 876 140 HOH HOH . D 4 HOH A 77 877 156 HOH HOH . D 4 HOH A 78 878 206 HOH HOH . D 4 HOH A 79 879 80 HOH HOH . D 4 HOH A 80 880 100 HOH HOH . D 4 HOH A 81 881 210 HOH HOH . D 4 HOH A 82 882 2 HOH HOH . D 4 HOH A 83 883 11 HOH HOH . D 4 HOH A 84 884 205 HOH HOH . D 4 HOH A 85 885 55 HOH HOH . D 4 HOH A 86 886 114 HOH HOH . D 4 HOH A 87 887 219 HOH HOH . D 4 HOH A 88 888 145 HOH HOH . D 4 HOH A 89 889 52 HOH HOH . D 4 HOH A 90 890 16 HOH HOH . D 4 HOH A 91 891 41 HOH HOH . D 4 HOH A 92 892 30 HOH HOH . D 4 HOH A 93 893 17 HOH HOH . D 4 HOH A 94 894 9 HOH HOH . D 4 HOH A 95 895 58 HOH HOH . D 4 HOH A 96 896 138 HOH HOH . D 4 HOH A 97 897 34 HOH HOH . D 4 HOH A 98 898 186 HOH HOH . D 4 HOH A 99 899 1 HOH HOH . D 4 HOH A 100 900 8 HOH HOH . D 4 HOH A 101 901 69 HOH HOH . D 4 HOH A 102 902 44 HOH HOH . D 4 HOH A 103 903 108 HOH HOH . D 4 HOH A 104 904 90 HOH HOH . D 4 HOH A 105 905 74 HOH HOH . D 4 HOH A 106 906 60 HOH HOH . D 4 HOH A 107 907 149 HOH HOH . D 4 HOH A 108 908 94 HOH HOH . D 4 HOH A 109 909 7 HOH HOH . D 4 HOH A 110 910 24 HOH HOH . D 4 HOH A 111 911 43 HOH HOH . D 4 HOH A 112 912 103 HOH HOH . D 4 HOH A 113 913 21 HOH HOH . D 4 HOH A 114 914 135 HOH HOH . D 4 HOH A 115 915 164 HOH HOH . D 4 HOH A 116 916 3 HOH HOH . D 4 HOH A 117 917 27 HOH HOH . D 4 HOH A 118 918 208 HOH HOH . D 4 HOH A 119 919 198 HOH HOH . D 4 HOH A 120 920 26 HOH HOH . D 4 HOH A 121 921 200 HOH HOH . D 4 HOH A 122 922 111 HOH HOH . D 4 HOH A 123 923 192 HOH HOH . D 4 HOH A 124 924 54 HOH HOH . D 4 HOH A 125 925 179 HOH HOH . D 4 HOH A 126 926 29 HOH HOH . D 4 HOH A 127 927 65 HOH HOH . D 4 HOH A 128 928 66 HOH HOH . D 4 HOH A 129 929 76 HOH HOH . D 4 HOH A 130 930 132 HOH HOH . D 4 HOH A 131 931 162 HOH HOH . D 4 HOH A 132 932 123 HOH HOH . D 4 HOH A 133 933 187 HOH HOH . D 4 HOH A 134 934 151 HOH HOH . D 4 HOH A 135 935 64 HOH HOH . D 4 HOH A 136 936 53 HOH HOH . D 4 HOH A 137 937 99 HOH HOH . D 4 HOH A 138 938 196 HOH HOH . D 4 HOH A 139 939 20 HOH HOH . D 4 HOH A 140 940 137 HOH HOH . D 4 HOH A 141 941 166 HOH HOH . D 4 HOH A 142 942 146 HOH HOH . D 4 HOH A 143 943 88 HOH HOH . D 4 HOH A 144 944 127 HOH HOH . D 4 HOH A 145 945 49 HOH HOH . D 4 HOH A 146 946 125 HOH HOH . D 4 HOH A 147 947 150 HOH HOH . D 4 HOH A 148 948 161 HOH HOH . D 4 HOH A 149 949 92 HOH HOH . D 4 HOH A 150 950 194 HOH HOH . D 4 HOH A 151 951 142 HOH HOH . D 4 HOH A 152 952 31 HOH HOH . D 4 HOH A 153 953 82 HOH HOH . D 4 HOH A 154 954 62 HOH HOH . D 4 HOH A 155 955 169 HOH HOH . D 4 HOH A 156 956 75 HOH HOH . D 4 HOH A 157 957 79 HOH HOH . D 4 HOH A 158 958 211 HOH HOH . D 4 HOH A 159 959 104 HOH HOH . D 4 HOH A 160 960 109 HOH HOH . D 4 HOH A 161 961 167 HOH HOH . D 4 HOH A 162 962 118 HOH HOH . D 4 HOH A 163 963 57 HOH HOH . D 4 HOH A 164 964 216 HOH HOH . D 4 HOH A 165 965 218 HOH HOH . D 4 HOH A 166 966 204 HOH HOH . D 4 HOH A 167 967 185 HOH HOH . D 4 HOH A 168 968 117 HOH HOH . D 4 HOH A 169 969 120 HOH HOH . D 4 HOH A 170 970 91 HOH HOH . D 4 HOH A 171 971 214 HOH HOH . D 4 HOH A 172 972 201 HOH HOH . D 4 HOH A 173 973 70 HOH HOH . D 4 HOH A 174 974 217 HOH HOH . D 4 HOH A 175 975 18 HOH HOH . D 4 HOH A 176 976 85 HOH HOH . D 4 HOH A 177 977 71 HOH HOH . D 4 HOH A 178 978 171 HOH HOH . D 4 HOH A 179 979 175 HOH HOH . D 4 HOH A 180 980 190 HOH HOH . D 4 HOH A 181 981 188 HOH HOH . D 4 HOH A 182 982 158 HOH HOH . D 4 HOH A 183 983 110 HOH HOH . D 4 HOH A 184 984 189 HOH HOH . D 4 HOH A 185 985 184 HOH HOH . D 4 HOH A 186 986 180 HOH HOH . D 4 HOH A 187 987 157 HOH HOH . D 4 HOH A 188 988 51 HOH HOH . D 4 HOH A 189 989 181 HOH HOH . D 4 HOH A 190 990 5 HOH HOH . D 4 HOH A 191 991 122 HOH HOH . D 4 HOH A 192 992 172 HOH HOH . D 4 HOH A 193 993 202 HOH HOH . D 4 HOH A 194 994 83 HOH HOH . D 4 HOH A 195 995 81 HOH HOH . D 4 HOH A 196 996 154 HOH HOH . D 4 HOH A 197 997 101 HOH HOH . D 4 HOH A 198 998 193 HOH HOH . D 4 HOH A 199 999 126 HOH HOH . D 4 HOH A 200 1000 147 HOH HOH . D 4 HOH A 201 1001 119 HOH HOH . D 4 HOH A 202 1002 176 HOH HOH . D 4 HOH A 203 1003 203 HOH HOH . D 4 HOH A 204 1004 50 HOH HOH . D 4 HOH A 205 1005 199 HOH HOH . D 4 HOH A 206 1006 141 HOH HOH . D 4 HOH A 207 1007 106 HOH HOH . D 4 HOH A 208 1008 191 HOH HOH . D 4 HOH A 209 1009 130 HOH HOH . D 4 HOH A 210 1010 174 HOH HOH . D 4 HOH A 211 1011 61 HOH HOH . D 4 HOH A 212 1012 152 HOH HOH . D 4 HOH A 213 1013 173 HOH HOH . D 4 HOH A 214 1014 129 HOH HOH . D 4 HOH A 215 1015 178 HOH HOH . D 4 HOH A 216 1016 195 HOH HOH . D 4 HOH A 217 1017 183 HOH HOH . D 4 HOH A 218 1018 128 HOH HOH . D 4 HOH A 219 1019 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 GJJ . . . B 2 -20.274 6.006 -0.634 1 19.72 ? C2 GJJ 701 A 1 HETATM 2 C C3 GJJ . . . B 2 -19.261 5.697 -1.668 1 19.76 ? C3 GJJ 701 A 1 HETATM 3 C C9 GJJ . . . B 2 -20.929 5.811 1.715 1 20.06 ? C9 GJJ 701 A 1 HETATM 4 C C10 GJJ . . . B 2 -20.499 5.336 2.959 1 20.84 ? C10 GJJ 701 A 1 HETATM 5 C C11 GJJ . . . B 2 -21.29 5.528 4.094 1 24.55 ? C11 GJJ 701 A 1 HETATM 6 C C12 GJJ . . . B 2 -22.543 6.158 3.971 1 24.97 ? C12 GJJ 701 A 1 HETATM 7 C C13 GJJ . . . B 2 -22.958 6.646 2.744 1 22.28 ? C13 GJJ 701 A 1 HETATM 8 C C14 GJJ . . . B 2 -22.152 6.478 1.617 1 19.69 ? C14 GJJ 701 A 1 HETATM 9 C C15 GJJ . . . B 2 -23.443 6.473 5.131 1 35.71 ? C15 GJJ 701 A 1 HETATM 10 O O17 GJJ . . . B 2 -24.626 6.661 4.864 1 48.32 ? O17 GJJ 701 A 1 HETATM 11 C C19 GJJ . . . B 2 -24.741 6.037 7.891 1 41.31 ? C19 GJJ 701 A 1 HETATM 12 C C20 GJJ . . . B 2 -22.717 7.24 8.723 1 45.08 ? C20 GJJ 701 A 1 HETATM 13 C C21 GJJ . . . B 2 -24.344 8.446 7.296 1 44.55 ? C21 GJJ 701 A 1 HETATM 14 C C22 GJJ . . . B 2 -23.06 8.152 -3.953 1 23.97 ? C22 GJJ 701 A 1 HETATM 15 C C24 GJJ . . . B 2 -24.52 9.156 -2.313 1 25.24 ? C24 GJJ 701 A 1 HETATM 16 N N26 GJJ . . . B 2 -24.166 10.58 -2.285 1 23.54 ? N26 GJJ 701 A 1 HETATM 17 C C27 GJJ . . . B 2 -17.98 5.002 -1.284 1 16.77 ? C27 GJJ 701 A 1 HETATM 18 C C30 GJJ . . . B 2 -24.63 11.444 -1.37 1 20.88 ? C30 GJJ 701 A 1 HETATM 19 C C32 GJJ . . . B 2 -24.251 12.903 -1.507 1 19.96 ? C32 GJJ 701 A 1 HETATM 20 C C33 GJJ . . . B 2 -24.085 13.757 -0.253 1 15.02 ? C33 GJJ 701 A 1 HETATM 21 N N1 GJJ . . . B 2 -21.368 6.687 -1.031 1 22.13 ? N1 GJJ 701 A 1 HETATM 22 C C4 GJJ . . . B 2 -19.447 6.059 -2.978 1 18.52 ? C4 GJJ 701 A 1 HETATM 23 C C5 GJJ . . . B 2 -20.611 6.778 -3.315 1 21.75 ? C5 GJJ 701 A 1 HETATM 24 C C6 GJJ . . . B 2 -21.547 7.051 -2.318 1 23.27 ? C6 GJJ 701 A 1 HETATM 25 N N7 GJJ . . . B 2 -22.703 7.763 -2.591 1 24.23 ? N7 GJJ 701 A 1 HETATM 26 N N8 GJJ . . . B 2 -20.089 5.652 0.665 1 20.05 ? N8 GJJ 701 A 1 HETATM 27 N N16 GJJ . . . B 2 -22.908 6.704 6.352 1 41.52 ? N16 GJJ 701 A 1 HETATM 28 C C18 GJJ . . . B 2 -23.683 7.082 7.544 1 43.49 ? C18 GJJ 701 A 1 HETATM 29 C C23 GJJ . . . B 2 -24.461 8.74 -3.759 1 23.6 ? C23 GJJ 701 A 1 HETATM 30 C C25 GJJ . . . B 2 -23.593 8.203 -1.54 1 24.25 ? C25 GJJ 701 A 1 HETATM 31 N N28 GJJ . . . B 2 -16.933 5.074 -2.19 1 17.17 ? N28 GJJ 701 A 1 HETATM 32 O O29 GJJ . . . B 2 -17.881 4.457 -0.21 1 15.71 ? O29 GJJ 701 A 1 HETATM 33 O O31 GJJ . . . B 2 -25.384 11.182 -0.435 1 25.34 ? O31 GJJ 701 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #