data_6DIK # _model_server_result.job_id R-oKoZ8zem5NFvQ1fu_Pyg _model_server_result.datetime_utc '2024-11-22 08:20:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dik # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 6DIK # _exptl.entry_id 6DIK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.02 _cell.angle_gamma 90 _cell.entry_id 6DIK _cell.length_a 39.558 _cell.length_b 71.632 _cell.length_c 44.791 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DIK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 27 1_555 A SG CYS 115 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 28 A CYS 29 1_555 A SG CYS 44 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 43 A CYS 44 1_555 A SG CYS 95 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 49 A CYS 50 1_555 A SG CYS 121 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 A SG CYS 50 A CYS 51 1_555 A SG CYS 88 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 A SG CYS 57 A CYS 61 1_555 A SG CYS 81 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 75 A CYS 84 1_555 A SG CYS 86 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 B SG CYS 26 B CYS 27 1_555 B SG CYS 115 B CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 B SG CYS 28 B CYS 29 1_555 B SG CYS 44 B CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf10 B SG CYS 43 B CYS 44 1_555 B SG CYS 95 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf11 B SG CYS 49 B CYS 50 1_555 B SG CYS 121 B CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf12 B SG CYS 50 B CYS 51 1_555 B SG CYS 88 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf13 B SG CYS 57 B CYS 61 1_555 B SG CYS 81 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf14 B SG CYS 75 B CYS 84 1_555 B SG CYS 86 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 355 n n S O2 SO4 doub 356 n n S O3 SO4 sing 357 n n S O4 SO4 sing 358 n n # _atom_sites.entry_id 6DIK _atom_sites.fract_transf_matrix[1][1] 0.025279 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008714 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01396 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023615 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GKP A 1 201 1 GKP DUM . D 3 SO4 A 1 202 1 SO4 SO4 . E 3 SO4 A 1 203 2 SO4 SO4 . F 3 SO4 A 1 204 5 SO4 SO4 . G 3 SO4 B 1 201 6 SO4 SO4 . H 3 SO4 B 1 202 7 SO4 SO4 . I 4 BCT B 1 203 1 BCT BCT . J 5 EOH B 1 204 1 EOH EOH . K 6 HOH A 1 301 2 HOH HOH . K 6 HOH A 2 302 144 HOH HOH . K 6 HOH A 3 303 168 HOH HOH . K 6 HOH A 4 304 81 HOH HOH . K 6 HOH A 5 305 85 HOH HOH . K 6 HOH A 6 306 112 HOH HOH . K 6 HOH A 7 307 182 HOH HOH . K 6 HOH A 8 308 65 HOH HOH . K 6 HOH A 9 309 120 HOH HOH . K 6 HOH A 10 310 53 HOH HOH . K 6 HOH A 11 311 98 HOH HOH . K 6 HOH A 12 312 34 HOH HOH . K 6 HOH A 13 313 178 HOH HOH . K 6 HOH A 14 314 109 HOH HOH . K 6 HOH A 15 315 87 HOH HOH . K 6 HOH A 16 316 172 HOH HOH . K 6 HOH A 17 317 122 HOH HOH . K 6 HOH A 18 318 14 HOH HOH . K 6 HOH A 19 319 4 HOH HOH . K 6 HOH A 20 320 3 HOH HOH . K 6 HOH A 21 321 205 HOH HOH . K 6 HOH A 22 322 158 HOH HOH . K 6 HOH A 23 323 121 HOH HOH . K 6 HOH A 24 324 96 HOH HOH . K 6 HOH A 25 325 210 HOH HOH . K 6 HOH A 26 326 1 HOH HOH . K 6 HOH A 27 327 92 HOH HOH . K 6 HOH A 28 328 105 HOH HOH . K 6 HOH A 29 329 42 HOH HOH . K 6 HOH A 30 330 106 HOH HOH . K 6 HOH A 31 331 66 HOH HOH . K 6 HOH A 32 332 160 HOH HOH . K 6 HOH A 33 333 30 HOH HOH . K 6 HOH A 34 334 111 HOH HOH . K 6 HOH A 35 335 21 HOH HOH . K 6 HOH A 36 336 58 HOH HOH . K 6 HOH A 37 337 133 HOH HOH . K 6 HOH A 38 338 33 HOH HOH . K 6 HOH A 39 339 136 HOH HOH . K 6 HOH A 40 340 169 HOH HOH . K 6 HOH A 41 341 79 HOH HOH . K 6 HOH A 42 342 104 HOH HOH . K 6 HOH A 43 343 101 HOH HOH . K 6 HOH A 44 344 129 HOH HOH . K 6 HOH A 45 345 134 HOH HOH . K 6 HOH A 46 346 94 HOH HOH . K 6 HOH A 47 347 131 HOH HOH . K 6 HOH A 48 348 18 HOH HOH . K 6 HOH A 49 349 59 HOH HOH . K 6 HOH A 50 350 155 HOH HOH . K 6 HOH A 51 351 127 HOH HOH . K 6 HOH A 52 352 69 HOH HOH . K 6 HOH A 53 353 28 HOH HOH . K 6 HOH A 54 354 107 HOH HOH . K 6 HOH A 55 355 23 HOH HOH . K 6 HOH A 56 356 36 HOH HOH . K 6 HOH A 57 357 197 HOH HOH . K 6 HOH A 58 358 20 HOH HOH . K 6 HOH A 59 359 163 HOH HOH . K 6 HOH A 60 360 27 HOH HOH . K 6 HOH A 61 361 202 HOH HOH . K 6 HOH A 62 362 75 HOH HOH . K 6 HOH A 63 363 12 HOH HOH . K 6 HOH A 64 364 64 HOH HOH . K 6 HOH A 65 365 93 HOH HOH . K 6 HOH A 66 366 89 HOH HOH . K 6 HOH A 67 367 26 HOH HOH . K 6 HOH A 68 368 184 HOH HOH . K 6 HOH A 69 369 83 HOH HOH . K 6 HOH A 70 370 124 HOH HOH . K 6 HOH A 71 371 39 HOH HOH . K 6 HOH A 72 372 11 HOH HOH . K 6 HOH A 73 373 82 HOH HOH . K 6 HOH A 74 374 147 HOH HOH . K 6 HOH A 75 375 118 HOH HOH . K 6 HOH A 76 376 188 HOH HOH . K 6 HOH A 77 377 114 HOH HOH . K 6 HOH A 78 378 139 HOH HOH . K 6 HOH A 79 379 54 HOH HOH . K 6 HOH A 80 380 153 HOH HOH . K 6 HOH A 81 381 207 HOH HOH . K 6 HOH A 82 382 52 HOH HOH . K 6 HOH A 83 383 200 HOH HOH . K 6 HOH A 84 384 157 HOH HOH . K 6 HOH A 85 385 10 HOH HOH . K 6 HOH A 86 386 61 HOH HOH . K 6 HOH A 87 387 161 HOH HOH . K 6 HOH A 88 388 47 HOH HOH . K 6 HOH A 89 389 57 HOH HOH . K 6 HOH A 90 390 148 HOH HOH . K 6 HOH A 91 391 117 HOH HOH . K 6 HOH A 92 392 68 HOH HOH . K 6 HOH A 93 393 125 HOH HOH . K 6 HOH A 94 394 166 HOH HOH . K 6 HOH A 95 395 170 HOH HOH . K 6 HOH A 96 396 80 HOH HOH . K 6 HOH A 97 397 199 HOH HOH . K 6 HOH A 98 398 132 HOH HOH . K 6 HOH A 99 399 90 HOH HOH . K 6 HOH A 100 400 123 HOH HOH . K 6 HOH A 101 401 195 HOH HOH . K 6 HOH A 102 402 113 HOH HOH . K 6 HOH A 103 403 76 HOH HOH . K 6 HOH A 104 404 165 HOH HOH . K 6 HOH A 105 405 159 HOH HOH . K 6 HOH A 106 406 37 HOH HOH . K 6 HOH A 107 407 176 HOH HOH . K 6 HOH A 108 408 156 HOH HOH . K 6 HOH A 109 409 193 HOH HOH . K 6 HOH A 110 410 198 HOH HOH . K 6 HOH A 111 411 44 HOH HOH . K 6 HOH A 112 412 146 HOH HOH . K 6 HOH A 113 413 130 HOH HOH . K 6 HOH A 114 414 167 HOH HOH . K 6 HOH A 115 415 74 HOH HOH . K 6 HOH A 116 416 142 HOH HOH . K 6 HOH A 117 417 43 HOH HOH . K 6 HOH A 118 418 192 HOH HOH . K 6 HOH A 119 419 183 HOH HOH . L 6 HOH B 1 301 135 HOH HOH . L 6 HOH B 2 302 204 HOH HOH . L 6 HOH B 3 303 56 HOH HOH . L 6 HOH B 4 304 119 HOH HOH . L 6 HOH B 5 305 116 HOH HOH . L 6 HOH B 6 306 99 HOH HOH . L 6 HOH B 7 307 15 HOH HOH . L 6 HOH B 8 308 110 HOH HOH . L 6 HOH B 9 309 17 HOH HOH . L 6 HOH B 10 310 84 HOH HOH . L 6 HOH B 11 311 97 HOH HOH . L 6 HOH B 12 312 16 HOH HOH . L 6 HOH B 13 313 73 HOH HOH . L 6 HOH B 14 314 29 HOH HOH . L 6 HOH B 15 315 128 HOH HOH . L 6 HOH B 16 316 13 HOH HOH . L 6 HOH B 17 317 78 HOH HOH . L 6 HOH B 18 318 154 HOH HOH . L 6 HOH B 19 319 48 HOH HOH . L 6 HOH B 20 320 150 HOH HOH . L 6 HOH B 21 321 45 HOH HOH . L 6 HOH B 22 322 7 HOH HOH . L 6 HOH B 23 323 8 HOH HOH . L 6 HOH B 24 324 137 HOH HOH . L 6 HOH B 25 325 196 HOH HOH . L 6 HOH B 26 326 9 HOH HOH . L 6 HOH B 27 327 191 HOH HOH . L 6 HOH B 28 328 88 HOH HOH . L 6 HOH B 29 329 209 HOH HOH . L 6 HOH B 30 330 32 HOH HOH . L 6 HOH B 31 331 49 HOH HOH . L 6 HOH B 32 332 50 HOH HOH . L 6 HOH B 33 333 22 HOH HOH . L 6 HOH B 34 334 62 HOH HOH . L 6 HOH B 35 335 180 HOH HOH . L 6 HOH B 36 336 151 HOH HOH . L 6 HOH B 37 337 70 HOH HOH . L 6 HOH B 38 338 208 HOH HOH . L 6 HOH B 39 339 40 HOH HOH . L 6 HOH B 40 340 6 HOH HOH . L 6 HOH B 41 341 77 HOH HOH . L 6 HOH B 42 342 201 HOH HOH . L 6 HOH B 43 343 71 HOH HOH . L 6 HOH B 44 344 19 HOH HOH . L 6 HOH B 45 345 25 HOH HOH . L 6 HOH B 46 346 149 HOH HOH . L 6 HOH B 47 347 63 HOH HOH . L 6 HOH B 48 348 140 HOH HOH . L 6 HOH B 49 349 60 HOH HOH . L 6 HOH B 50 350 126 HOH HOH . L 6 HOH B 51 351 91 HOH HOH . L 6 HOH B 52 352 194 HOH HOH . L 6 HOH B 53 353 5 HOH HOH . L 6 HOH B 54 354 203 HOH HOH . L 6 HOH B 55 355 138 HOH HOH . L 6 HOH B 56 356 164 HOH HOH . L 6 HOH B 57 357 95 HOH HOH . L 6 HOH B 58 358 162 HOH HOH . L 6 HOH B 59 359 115 HOH HOH . L 6 HOH B 60 360 177 HOH HOH . L 6 HOH B 61 361 171 HOH HOH . L 6 HOH B 62 362 143 HOH HOH . L 6 HOH B 63 363 179 HOH HOH . L 6 HOH B 64 364 108 HOH HOH . L 6 HOH B 65 365 173 HOH HOH . L 6 HOH B 66 366 187 HOH HOH . L 6 HOH B 67 367 181 HOH HOH . L 6 HOH B 68 368 46 HOH HOH . L 6 HOH B 69 369 41 HOH HOH . L 6 HOH B 70 370 175 HOH HOH . L 6 HOH B 71 371 86 HOH HOH . L 6 HOH B 72 372 152 HOH HOH . L 6 HOH B 73 373 38 HOH HOH . L 6 HOH B 74 374 24 HOH HOH . L 6 HOH B 75 375 35 HOH HOH . L 6 HOH B 76 376 51 HOH HOH . L 6 HOH B 77 377 72 HOH HOH . L 6 HOH B 78 378 186 HOH HOH . L 6 HOH B 79 379 141 HOH HOH . L 6 HOH B 80 380 102 HOH HOH . L 6 HOH B 81 381 145 HOH HOH . L 6 HOH B 82 382 55 HOH HOH . L 6 HOH B 83 383 185 HOH HOH . L 6 HOH B 84 384 100 HOH HOH . L 6 HOH B 85 385 67 HOH HOH . L 6 HOH B 86 386 103 HOH HOH . L 6 HOH B 87 387 31 HOH HOH . L 6 HOH B 88 388 206 HOH HOH . L 6 HOH B 89 389 189 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 3 -11.153 -2.37 3.933 0.84 70.41 ? S SO4 202 A 1 HETATM 2 O O1 SO4 . . . D 3 -10.947 -1.068 3.3 0.84 65.35 ? O1 SO4 202 A 1 HETATM 3 O O2 SO4 . . . D 3 -11.47 -3.358 2.906 0.84 72.92 ? O2 SO4 202 A 1 HETATM 4 O O3 SO4 . . . D 3 -9.94 -2.775 4.638 0.84 64.69 ? O3 SO4 202 A 1 HETATM 5 O O4 SO4 . . . D 3 -12.257 -2.287 4.887 0.84 68.91 ? O4 SO4 202 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 458 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #