data_6DIS # _model_server_result.job_id L9Gq2TAPuI5vyWrWSkuCLA _model_server_result.datetime_utc '2025-07-16 04:31:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dis # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1207}' # _entry.id 6DIS # _exptl.entry_id 6DIS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DIS _cell.length_a 55.607 _cell.length_b 58.628 _cell.length_c 59.966 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DIS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 116 A CYS 1097 1_555 G ZN ZN . A ZN 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc2 A SG CYS 118 A CYS 1099 1_555 G ZN ZN . A ZN 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc3 A SG CYS 164 A CYS 1145 1_555 G ZN ZN . A ZN 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc4 A ND1 HIS 168 A HIS 1149 1_555 G ZN ZN . A ZN 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 237 n n C1 C2 GOL sing 238 n n C1 H11 GOL sing 239 n n C1 H12 GOL sing 240 n n O1 HO1 GOL sing 241 n n C2 O2 GOL sing 242 n n C2 C3 GOL sing 243 n n C2 H2 GOL sing 244 n n O2 HO2 GOL sing 245 n n C3 O3 GOL sing 246 n n C3 H31 GOL sing 247 n n C3 H32 GOL sing 248 n n O3 HO3 GOL sing 249 n n # _atom_sites.entry_id 6DIS _atom_sites.fract_transf_matrix[1][1] 0.017983 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017057 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016676 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GKG A 1 1201 1 GKG LIG . C 3 SO4 A 1 1202 1 SO4 SO4 . D 3 SO4 A 1 1203 2 SO4 SO4 . E 3 SO4 A 1 1204 3 SO4 SO4 . F 3 SO4 A 1 1205 4 SO4 SO4 . G 4 ZN A 1 1206 1 ZN ZN . H 5 GOL A 1 1207 1 GOL GOL . I 6 HOH A 1 1301 203 HOH HOH . I 6 HOH A 2 1302 205 HOH HOH . I 6 HOH A 3 1303 84 HOH HOH . I 6 HOH A 4 1304 215 HOH HOH . I 6 HOH A 5 1305 192 HOH HOH . I 6 HOH A 6 1306 117 HOH HOH . I 6 HOH A 7 1307 16 HOH HOH . I 6 HOH A 8 1308 162 HOH HOH . I 6 HOH A 9 1309 181 HOH HOH . I 6 HOH A 10 1310 154 HOH HOH . I 6 HOH A 11 1311 50 HOH HOH . I 6 HOH A 12 1312 152 HOH HOH . I 6 HOH A 13 1313 171 HOH HOH . I 6 HOH A 14 1314 59 HOH HOH . I 6 HOH A 15 1315 159 HOH HOH . I 6 HOH A 16 1316 81 HOH HOH . I 6 HOH A 17 1317 9 HOH HOH . I 6 HOH A 18 1318 193 HOH HOH . I 6 HOH A 19 1319 13 HOH HOH . I 6 HOH A 20 1320 98 HOH HOH . I 6 HOH A 21 1321 56 HOH HOH . I 6 HOH A 22 1322 91 HOH HOH . I 6 HOH A 23 1323 128 HOH HOH . I 6 HOH A 24 1324 185 HOH HOH . I 6 HOH A 25 1325 85 HOH HOH . I 6 HOH A 26 1326 60 HOH HOH . I 6 HOH A 27 1327 112 HOH HOH . I 6 HOH A 28 1328 114 HOH HOH . I 6 HOH A 29 1329 151 HOH HOH . I 6 HOH A 30 1330 89 HOH HOH . I 6 HOH A 31 1331 115 HOH HOH . I 6 HOH A 32 1332 73 HOH HOH . I 6 HOH A 33 1333 61 HOH HOH . I 6 HOH A 34 1334 35 HOH HOH . I 6 HOH A 35 1335 57 HOH HOH . I 6 HOH A 36 1336 97 HOH HOH . I 6 HOH A 37 1337 124 HOH HOH . I 6 HOH A 38 1338 78 HOH HOH . I 6 HOH A 39 1339 51 HOH HOH . I 6 HOH A 40 1340 127 HOH HOH . I 6 HOH A 41 1341 164 HOH HOH . I 6 HOH A 42 1342 169 HOH HOH . I 6 HOH A 43 1343 31 HOH HOH . I 6 HOH A 44 1344 175 HOH HOH . I 6 HOH A 45 1345 23 HOH HOH . I 6 HOH A 46 1346 36 HOH HOH . I 6 HOH A 47 1347 52 HOH HOH . I 6 HOH A 48 1348 7 HOH HOH . I 6 HOH A 49 1349 111 HOH HOH . I 6 HOH A 50 1350 18 HOH HOH . I 6 HOH A 51 1351 69 HOH HOH . I 6 HOH A 52 1352 165 HOH HOH . I 6 HOH A 53 1353 48 HOH HOH . I 6 HOH A 54 1354 105 HOH HOH . I 6 HOH A 55 1355 76 HOH HOH . I 6 HOH A 56 1356 30 HOH HOH . I 6 HOH A 57 1357 10 HOH HOH . I 6 HOH A 58 1358 86 HOH HOH . I 6 HOH A 59 1359 2 HOH HOH . I 6 HOH A 60 1360 53 HOH HOH . I 6 HOH A 61 1361 54 HOH HOH . I 6 HOH A 62 1362 68 HOH HOH . I 6 HOH A 63 1363 189 HOH HOH . I 6 HOH A 64 1364 100 HOH HOH . I 6 HOH A 65 1365 14 HOH HOH . I 6 HOH A 66 1366 90 HOH HOH . I 6 HOH A 67 1367 46 HOH HOH . I 6 HOH A 68 1368 166 HOH HOH . I 6 HOH A 69 1369 24 HOH HOH . I 6 HOH A 70 1370 70 HOH HOH . I 6 HOH A 71 1371 213 HOH HOH . I 6 HOH A 72 1372 129 HOH HOH . I 6 HOH A 73 1373 6 HOH HOH . I 6 HOH A 74 1374 41 HOH HOH . I 6 HOH A 75 1375 62 HOH HOH . I 6 HOH A 76 1376 143 HOH HOH . I 6 HOH A 77 1377 72 HOH HOH . I 6 HOH A 78 1378 17 HOH HOH . I 6 HOH A 79 1379 28 HOH HOH . I 6 HOH A 80 1380 202 HOH HOH . I 6 HOH A 81 1381 11 HOH HOH . I 6 HOH A 82 1382 44 HOH HOH . I 6 HOH A 83 1383 66 HOH HOH . I 6 HOH A 84 1384 1 HOH HOH . I 6 HOH A 85 1385 64 HOH HOH . I 6 HOH A 86 1386 160 HOH HOH . I 6 HOH A 87 1387 29 HOH HOH . I 6 HOH A 88 1388 21 HOH HOH . I 6 HOH A 89 1389 83 HOH HOH . I 6 HOH A 90 1390 49 HOH HOH . I 6 HOH A 91 1391 190 HOH HOH . I 6 HOH A 92 1392 79 HOH HOH . I 6 HOH A 93 1393 15 HOH HOH . I 6 HOH A 94 1394 92 HOH HOH . I 6 HOH A 95 1395 71 HOH HOH . I 6 HOH A 96 1396 145 HOH HOH . I 6 HOH A 97 1397 141 HOH HOH . I 6 HOH A 98 1398 26 HOH HOH . I 6 HOH A 99 1399 77 HOH HOH . I 6 HOH A 100 1400 65 HOH HOH . I 6 HOH A 101 1401 118 HOH HOH . I 6 HOH A 102 1402 19 HOH HOH . I 6 HOH A 103 1403 27 HOH HOH . I 6 HOH A 104 1404 138 HOH HOH . I 6 HOH A 105 1405 88 HOH HOH . I 6 HOH A 106 1406 106 HOH HOH . I 6 HOH A 107 1407 206 HOH HOH . I 6 HOH A 108 1408 119 HOH HOH . I 6 HOH A 109 1409 99 HOH HOH . I 6 HOH A 110 1410 25 HOH HOH . I 6 HOH A 111 1411 158 HOH HOH . I 6 HOH A 112 1412 103 HOH HOH . I 6 HOH A 113 1413 58 HOH HOH . I 6 HOH A 114 1414 12 HOH HOH . I 6 HOH A 115 1415 156 HOH HOH . I 6 HOH A 116 1416 75 HOH HOH . I 6 HOH A 117 1417 20 HOH HOH . I 6 HOH A 118 1418 5 HOH HOH . I 6 HOH A 119 1419 43 HOH HOH . I 6 HOH A 120 1420 80 HOH HOH . I 6 HOH A 121 1421 168 HOH HOH . I 6 HOH A 122 1422 37 HOH HOH . I 6 HOH A 123 1423 101 HOH HOH . I 6 HOH A 124 1424 146 HOH HOH . I 6 HOH A 125 1425 22 HOH HOH . I 6 HOH A 126 1426 137 HOH HOH . I 6 HOH A 127 1427 208 HOH HOH . I 6 HOH A 128 1428 42 HOH HOH . I 6 HOH A 129 1429 153 HOH HOH . I 6 HOH A 130 1430 8 HOH HOH . I 6 HOH A 131 1431 108 HOH HOH . I 6 HOH A 132 1432 32 HOH HOH . I 6 HOH A 133 1433 55 HOH HOH . I 6 HOH A 134 1434 39 HOH HOH . I 6 HOH A 135 1435 121 HOH HOH . I 6 HOH A 136 1436 109 HOH HOH . I 6 HOH A 137 1437 113 HOH HOH . I 6 HOH A 138 1438 125 HOH HOH . I 6 HOH A 139 1439 3 HOH HOH . I 6 HOH A 140 1440 38 HOH HOH . I 6 HOH A 141 1441 142 HOH HOH . I 6 HOH A 142 1442 177 HOH HOH . I 6 HOH A 143 1443 131 HOH HOH . I 6 HOH A 144 1444 211 HOH HOH . I 6 HOH A 145 1445 33 HOH HOH . I 6 HOH A 146 1446 134 HOH HOH . I 6 HOH A 147 1447 122 HOH HOH . I 6 HOH A 148 1448 196 HOH HOH . I 6 HOH A 149 1449 126 HOH HOH . I 6 HOH A 150 1450 216 HOH HOH . I 6 HOH A 151 1451 67 HOH HOH . I 6 HOH A 152 1452 144 HOH HOH . I 6 HOH A 153 1453 45 HOH HOH . I 6 HOH A 154 1454 183 HOH HOH . I 6 HOH A 155 1455 102 HOH HOH . I 6 HOH A 156 1456 107 HOH HOH . I 6 HOH A 157 1457 4 HOH HOH . I 6 HOH A 158 1458 47 HOH HOH . I 6 HOH A 159 1459 95 HOH HOH . I 6 HOH A 160 1460 74 HOH HOH . I 6 HOH A 161 1461 197 HOH HOH . I 6 HOH A 162 1462 94 HOH HOH . I 6 HOH A 163 1463 120 HOH HOH . I 6 HOH A 164 1464 180 HOH HOH . I 6 HOH A 165 1465 201 HOH HOH . I 6 HOH A 166 1466 194 HOH HOH . I 6 HOH A 167 1467 210 HOH HOH . I 6 HOH A 168 1468 198 HOH HOH . I 6 HOH A 169 1469 123 HOH HOH . I 6 HOH A 170 1470 176 HOH HOH . I 6 HOH A 171 1471 148 HOH HOH . I 6 HOH A 172 1472 161 HOH HOH . I 6 HOH A 173 1473 199 HOH HOH . I 6 HOH A 174 1474 200 HOH HOH . I 6 HOH A 175 1475 140 HOH HOH . I 6 HOH A 176 1476 184 HOH HOH . I 6 HOH A 177 1477 149 HOH HOH . I 6 HOH A 178 1478 82 HOH HOH . I 6 HOH A 179 1479 132 HOH HOH . I 6 HOH A 180 1480 172 HOH HOH . I 6 HOH A 181 1481 207 HOH HOH . I 6 HOH A 182 1482 195 HOH HOH . I 6 HOH A 183 1483 178 HOH HOH . I 6 HOH A 184 1484 220 HOH HOH . I 6 HOH A 185 1485 188 HOH HOH . I 6 HOH A 186 1486 116 HOH HOH . I 6 HOH A 187 1487 218 HOH HOH . I 6 HOH A 188 1488 110 HOH HOH . I 6 HOH A 189 1489 157 HOH HOH . I 6 HOH A 190 1490 209 HOH HOH . I 6 HOH A 191 1491 217 HOH HOH . I 6 HOH A 192 1492 214 HOH HOH . I 6 HOH A 193 1493 204 HOH HOH . I 6 HOH A 194 1494 40 HOH HOH . I 6 HOH A 195 1495 186 HOH HOH . I 6 HOH A 196 1496 187 HOH HOH . I 6 HOH A 197 1497 147 HOH HOH . I 6 HOH A 198 1498 34 HOH HOH . I 6 HOH A 199 1499 191 HOH HOH . I 6 HOH A 200 1500 63 HOH HOH . I 6 HOH A 201 1501 87 HOH HOH . I 6 HOH A 202 1502 173 HOH HOH . I 6 HOH A 203 1503 93 HOH HOH . I 6 HOH A 204 1504 133 HOH HOH . I 6 HOH A 205 1505 174 HOH HOH . I 6 HOH A 206 1506 219 HOH HOH . I 6 HOH A 207 1507 135 HOH HOH . I 6 HOH A 208 1508 130 HOH HOH . I 6 HOH A 209 1509 104 HOH HOH . I 6 HOH A 210 1510 96 HOH HOH . I 6 HOH A 211 1511 179 HOH HOH . I 6 HOH A 212 1512 155 HOH HOH . I 6 HOH A 213 1513 136 HOH HOH . I 6 HOH A 214 1514 170 HOH HOH . I 6 HOH A 215 1515 163 HOH HOH . I 6 HOH A 216 1516 212 HOH HOH . I 6 HOH A 217 1517 167 HOH HOH . I 6 HOH A 218 1518 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 5 3.349 -19.156 23.904 0.78 27.35 ? C1 GOL 1207 A 1 HETATM 2 O O1 GOL . . . H 5 4.337 -19.627 23.025 0.78 28.95 ? O1 GOL 1207 A 1 HETATM 3 C C2 GOL . . . H 5 3.906 -17.905 24.515 0.78 29.61 ? C2 GOL 1207 A 1 HETATM 4 O O2 GOL . . . H 5 3.246 -16.8 23.993 0.78 34.62 ? O2 GOL 1207 A 1 HETATM 5 C C3 GOL . . . H 5 3.743 -18.007 26.021 0.78 27.38 ? C3 GOL 1207 A 1 HETATM 6 O O3 GOL . . . H 5 3.273 -16.768 26.443 0.78 31.4 ? O3 GOL 1207 A 1 HETATM 7 H H11 GOL . . . H 5 2.511 -18.957 23.459 0.78 32.82 ? H11 GOL 1207 A 1 HETATM 8 H H12 GOL . . . H 5 3.133 -19.793 24.604 0.78 32.82 ? H12 GOL 1207 A 1 HETATM 9 H HO1 GOL . . . H 5 4.761 -20.235 23.44 0.78 34.74 ? HO1 GOL 1207 A 1 HETATM 10 H H2 GOL . . . H 5 4.852 -17.828 24.315 0.78 35.53 ? H2 GOL 1207 A 1 HETATM 11 H HO2 GOL . . . H 5 3.747 -16.122 24.102 0.78 41.54 ? HO2 GOL 1207 A 1 HETATM 12 H H31 GOL . . . H 5 3.143 -18.741 26.227 0.78 32.86 ? H31 GOL 1207 A 1 HETATM 13 H H32 GOL . . . H 5 4.594 -18.254 26.417 0.78 32.86 ? H32 GOL 1207 A 1 HETATM 14 H HO3 GOL . . . H 5 2.494 -16.897 26.757 0.78 37.68 ? HO3 GOL 1207 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #