data_6DIU
#
_model_server_result.job_id            eRVrlAJbPQraJyw3PSI-Sg 
_model_server_result.datetime_utc      '2024-12-05 01:49:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6diu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1208}' 
#
_entry.id    6DIU 
#
_exptl.entry_id    6DIU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DIU 
_cell.length_a            55.085 
_cell.length_b            59.633 
_cell.length_c            58.462 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DIU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 116 A CYS 1097 1_555 B ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc2 A SG CYS 118 A CYS 1099 1_555 B ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc3 A SG CYS 164 A CYS 1145 1_555 B ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc4 A ND1 HIS 168 A HIS 1149 1_555 B ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 242 n n 
C1 C2 GOL sing 243 n n 
C1 H11 GOL sing 244 n n 
C1 H12 GOL sing 245 n n 
O1 HO1 GOL sing 246 n n 
C2 O2 GOL sing 247 n n 
C2 C3 GOL sing 248 n n 
C2 H2 GOL sing 249 n n 
O2 HO2 GOL sing 250 n n 
C3 O3 GOL sing 251 n n 
C3 H31 GOL sing 252 n n 
C3 H32 GOL sing 253 n n 
O3 HO3 GOL sing 254 n n 
#
_atom_sites.entry_id                     6DIU 
_atom_sites.fract_transf_matrix[1][1]    0.018154 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016769 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017105 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 1201 1 ZN ZN . 
C 3 SO4 A 1 1202 1 SO4 SO4 . 
D 3 SO4 A 1 1203 2 SO4 SO4 . 
E 3 SO4 A 1 1204 4 SO4 SO4 . 
F 3 SO4 A 1 1205 5 SO4 SO4 . 
G 4 GKM A 1 1206 1 GKM LIG . 
H 5 GOL A 1 1207 1 GOL GOL . 
I 5 GOL A 1 1208 2 GOL GOL . 
J 5 GOL A 1 1209 3 GOL GOL . 
K 5 GOL A 1 1210 4 GOL GOL . 
L 5 GOL A 1 1211 5 GOL GOL . 
M 6 HOH A 1 1301 113 HOH HOH . 
M 6 HOH A 2 1302 207 HOH HOH . 
M 6 HOH A 3 1303 183 HOH HOH . 
M 6 HOH A 4 1304 187 HOH HOH . 
M 6 HOH A 5 1305 181 HOH HOH . 
M 6 HOH A 6 1306 107 HOH HOH . 
M 6 HOH A 7 1307 193 HOH HOH . 
M 6 HOH A 8 1308 78 HOH HOH . 
M 6 HOH A 9 1309 150 HOH HOH . 
M 6 HOH A 10 1310 188 HOH HOH . 
M 6 HOH A 11 1311 92 HOH HOH . 
M 6 HOH A 12 1312 180 HOH HOH . 
M 6 HOH A 13 1313 182 HOH HOH . 
M 6 HOH A 14 1314 98 HOH HOH . 
M 6 HOH A 15 1315 104 HOH HOH . 
M 6 HOH A 16 1316 112 HOH HOH . 
M 6 HOH A 17 1317 209 HOH HOH . 
M 6 HOH A 18 1318 72 HOH HOH . 
M 6 HOH A 19 1319 75 HOH HOH . 
M 6 HOH A 20 1320 149 HOH HOH . 
M 6 HOH A 21 1321 24 HOH HOH . 
M 6 HOH A 22 1322 160 HOH HOH . 
M 6 HOH A 23 1323 158 HOH HOH . 
M 6 HOH A 24 1324 184 HOH HOH . 
M 6 HOH A 25 1325 60 HOH HOH . 
M 6 HOH A 26 1326 142 HOH HOH . 
M 6 HOH A 27 1327 114 HOH HOH . 
M 6 HOH A 28 1328 225 HOH HOH . 
M 6 HOH A 29 1329 141 HOH HOH . 
M 6 HOH A 30 1330 52 HOH HOH . 
M 6 HOH A 31 1331 204 HOH HOH . 
M 6 HOH A 32 1332 81 HOH HOH . 
M 6 HOH A 33 1333 1 HOH HOH . 
M 6 HOH A 34 1334 205 HOH HOH . 
M 6 HOH A 35 1335 54 HOH HOH . 
M 6 HOH A 36 1336 5 HOH HOH . 
M 6 HOH A 37 1337 49 HOH HOH . 
M 6 HOH A 38 1338 101 HOH HOH . 
M 6 HOH A 39 1339 156 HOH HOH . 
M 6 HOH A 40 1340 77 HOH HOH . 
M 6 HOH A 41 1341 16 HOH HOH . 
M 6 HOH A 42 1342 140 HOH HOH . 
M 6 HOH A 43 1343 208 HOH HOH . 
M 6 HOH A 44 1344 57 HOH HOH . 
M 6 HOH A 45 1345 76 HOH HOH . 
M 6 HOH A 46 1346 10 HOH HOH . 
M 6 HOH A 47 1347 178 HOH HOH . 
M 6 HOH A 48 1348 4 HOH HOH . 
M 6 HOH A 49 1349 111 HOH HOH . 
M 6 HOH A 50 1350 93 HOH HOH . 
M 6 HOH A 51 1351 154 HOH HOH . 
M 6 HOH A 52 1352 7 HOH HOH . 
M 6 HOH A 53 1353 87 HOH HOH . 
M 6 HOH A 54 1354 122 HOH HOH . 
M 6 HOH A 55 1355 124 HOH HOH . 
M 6 HOH A 56 1356 40 HOH HOH . 
M 6 HOH A 57 1357 23 HOH HOH . 
M 6 HOH A 58 1358 15 HOH HOH . 
M 6 HOH A 59 1359 36 HOH HOH . 
M 6 HOH A 60 1360 115 HOH HOH . 
M 6 HOH A 61 1361 46 HOH HOH . 
M 6 HOH A 62 1362 106 HOH HOH . 
M 6 HOH A 63 1363 2 HOH HOH . 
M 6 HOH A 64 1364 185 HOH HOH . 
M 6 HOH A 65 1365 44 HOH HOH . 
M 6 HOH A 66 1366 56 HOH HOH . 
M 6 HOH A 67 1367 50 HOH HOH . 
M 6 HOH A 68 1368 27 HOH HOH . 
M 6 HOH A 69 1369 88 HOH HOH . 
M 6 HOH A 70 1370 66 HOH HOH . 
M 6 HOH A 71 1371 14 HOH HOH . 
M 6 HOH A 72 1372 125 HOH HOH . 
M 6 HOH A 73 1373 32 HOH HOH . 
M 6 HOH A 74 1374 11 HOH HOH . 
M 6 HOH A 75 1375 132 HOH HOH . 
M 6 HOH A 76 1376 151 HOH HOH . 
M 6 HOH A 77 1377 43 HOH HOH . 
M 6 HOH A 78 1378 26 HOH HOH . 
M 6 HOH A 79 1379 55 HOH HOH . 
M 6 HOH A 80 1380 220 HOH HOH . 
M 6 HOH A 81 1381 9 HOH HOH . 
M 6 HOH A 82 1382 31 HOH HOH . 
M 6 HOH A 83 1383 58 HOH HOH . 
M 6 HOH A 84 1384 177 HOH HOH . 
M 6 HOH A 85 1385 176 HOH HOH . 
M 6 HOH A 86 1386 82 HOH HOH . 
M 6 HOH A 87 1387 6 HOH HOH . 
M 6 HOH A 88 1388 118 HOH HOH . 
M 6 HOH A 89 1389 71 HOH HOH . 
M 6 HOH A 90 1390 168 HOH HOH . 
M 6 HOH A 91 1391 79 HOH HOH . 
M 6 HOH A 92 1392 199 HOH HOH . 
M 6 HOH A 93 1393 94 HOH HOH . 
M 6 HOH A 94 1394 13 HOH HOH . 
M 6 HOH A 95 1395 109 HOH HOH . 
M 6 HOH A 96 1396 172 HOH HOH . 
M 6 HOH A 97 1397 103 HOH HOH . 
M 6 HOH A 98 1398 175 HOH HOH . 
M 6 HOH A 99 1399 42 HOH HOH . 
M 6 HOH A 100 1400 64 HOH HOH . 
M 6 HOH A 101 1401 73 HOH HOH . 
M 6 HOH A 102 1402 148 HOH HOH . 
M 6 HOH A 103 1403 19 HOH HOH . 
M 6 HOH A 104 1404 39 HOH HOH . 
M 6 HOH A 105 1405 21 HOH HOH . 
M 6 HOH A 106 1406 194 HOH HOH . 
M 6 HOH A 107 1407 53 HOH HOH . 
M 6 HOH A 108 1408 35 HOH HOH . 
M 6 HOH A 109 1409 28 HOH HOH . 
M 6 HOH A 110 1410 22 HOH HOH . 
M 6 HOH A 111 1411 197 HOH HOH . 
M 6 HOH A 112 1412 67 HOH HOH . 
M 6 HOH A 113 1413 84 HOH HOH . 
M 6 HOH A 114 1414 8 HOH HOH . 
M 6 HOH A 115 1415 59 HOH HOH . 
M 6 HOH A 116 1416 61 HOH HOH . 
M 6 HOH A 117 1417 25 HOH HOH . 
M 6 HOH A 118 1418 96 HOH HOH . 
M 6 HOH A 119 1419 186 HOH HOH . 
M 6 HOH A 120 1420 74 HOH HOH . 
M 6 HOH A 121 1421 171 HOH HOH . 
M 6 HOH A 122 1422 47 HOH HOH . 
M 6 HOH A 123 1423 37 HOH HOH . 
M 6 HOH A 124 1424 91 HOH HOH . 
M 6 HOH A 125 1425 90 HOH HOH . 
M 6 HOH A 126 1426 157 HOH HOH . 
M 6 HOH A 127 1427 18 HOH HOH . 
M 6 HOH A 128 1428 126 HOH HOH . 
M 6 HOH A 129 1429 34 HOH HOH . 
M 6 HOH A 130 1430 200 HOH HOH . 
M 6 HOH A 131 1431 12 HOH HOH . 
M 6 HOH A 132 1432 97 HOH HOH . 
M 6 HOH A 133 1433 159 HOH HOH . 
M 6 HOH A 134 1434 119 HOH HOH . 
M 6 HOH A 135 1435 48 HOH HOH . 
M 6 HOH A 136 1436 29 HOH HOH . 
M 6 HOH A 137 1437 139 HOH HOH . 
M 6 HOH A 138 1438 95 HOH HOH . 
M 6 HOH A 139 1439 70 HOH HOH . 
M 6 HOH A 140 1440 179 HOH HOH . 
M 6 HOH A 141 1441 136 HOH HOH . 
M 6 HOH A 142 1442 169 HOH HOH . 
M 6 HOH A 143 1443 135 HOH HOH . 
M 6 HOH A 144 1444 152 HOH HOH . 
M 6 HOH A 145 1445 62 HOH HOH . 
M 6 HOH A 146 1446 85 HOH HOH . 
M 6 HOH A 147 1447 69 HOH HOH . 
M 6 HOH A 148 1448 138 HOH HOH . 
M 6 HOH A 149 1449 192 HOH HOH . 
M 6 HOH A 150 1450 155 HOH HOH . 
M 6 HOH A 151 1451 33 HOH HOH . 
M 6 HOH A 152 1452 210 HOH HOH . 
M 6 HOH A 153 1453 198 HOH HOH . 
M 6 HOH A 154 1454 17 HOH HOH . 
M 6 HOH A 155 1455 144 HOH HOH . 
M 6 HOH A 156 1456 166 HOH HOH . 
M 6 HOH A 157 1457 123 HOH HOH . 
M 6 HOH A 158 1458 206 HOH HOH . 
M 6 HOH A 159 1459 86 HOH HOH . 
M 6 HOH A 160 1460 102 HOH HOH . 
M 6 HOH A 161 1461 3 HOH HOH . 
M 6 HOH A 162 1462 201 HOH HOH . 
M 6 HOH A 163 1463 133 HOH HOH . 
M 6 HOH A 164 1464 153 HOH HOH . 
M 6 HOH A 165 1465 195 HOH HOH . 
M 6 HOH A 166 1466 163 HOH HOH . 
M 6 HOH A 167 1467 120 HOH HOH . 
M 6 HOH A 168 1468 164 HOH HOH . 
M 6 HOH A 169 1469 227 HOH HOH . 
M 6 HOH A 170 1470 65 HOH HOH . 
M 6 HOH A 171 1471 80 HOH HOH . 
M 6 HOH A 172 1472 219 HOH HOH . 
M 6 HOH A 173 1473 217 HOH HOH . 
M 6 HOH A 174 1474 83 HOH HOH . 
M 6 HOH A 175 1475 215 HOH HOH . 
M 6 HOH A 176 1476 89 HOH HOH . 
M 6 HOH A 177 1477 110 HOH HOH . 
M 6 HOH A 178 1478 222 HOH HOH . 
M 6 HOH A 179 1479 196 HOH HOH . 
M 6 HOH A 180 1480 214 HOH HOH . 
M 6 HOH A 181 1481 143 HOH HOH . 
M 6 HOH A 182 1482 191 HOH HOH . 
M 6 HOH A 183 1483 218 HOH HOH . 
M 6 HOH A 184 1484 216 HOH HOH . 
M 6 HOH A 185 1485 189 HOH HOH . 
M 6 HOH A 186 1486 230 HOH HOH . 
M 6 HOH A 187 1487 212 HOH HOH . 
M 6 HOH A 188 1488 167 HOH HOH . 
M 6 HOH A 189 1489 231 HOH HOH . 
M 6 HOH A 190 1490 229 HOH HOH . 
M 6 HOH A 191 1491 203 HOH HOH . 
M 6 HOH A 192 1492 170 HOH HOH . 
M 6 HOH A 193 1493 121 HOH HOH . 
M 6 HOH A 194 1494 127 HOH HOH . 
M 6 HOH A 195 1495 202 HOH HOH . 
M 6 HOH A 196 1496 68 HOH HOH . 
M 6 HOH A 197 1497 100 HOH HOH . 
M 6 HOH A 198 1498 190 HOH HOH . 
M 6 HOH A 199 1499 117 HOH HOH . 
M 6 HOH A 200 1500 228 HOH HOH . 
M 6 HOH A 201 1501 145 HOH HOH . 
M 6 HOH A 202 1502 99 HOH HOH . 
M 6 HOH A 203 1503 165 HOH HOH . 
M 6 HOH A 204 1504 128 HOH HOH . 
M 6 HOH A 205 1505 146 HOH HOH . 
M 6 HOH A 206 1506 161 HOH HOH . 
M 6 HOH A 207 1507 162 HOH HOH . 
M 6 HOH A 208 1508 213 HOH HOH . 
M 6 HOH A 209 1509 232 HOH HOH . 
M 6 HOH A 210 1510 211 HOH HOH . 
M 6 HOH A 211 1511 147 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 5 -9.389 20.551 0.145 1 21.99 ? C1 GOL 1208 A 1 
HETATM 2 O O1 GOL . . . I 5 -10.769 20.674 0 1 22.66 ? O1 GOL 1208 A 1 
HETATM 3 C C2 GOL . . . I 5 -8.856 19.927 -1.159 1 20.78 ? C2 GOL 1208 A 1 
HETATM 4 O O2 GOL . . . I 5 -8.613 20.886 -2.128 1 25.26 ? O2 GOL 1208 A 1 
HETATM 5 C C3 GOL . . . I 5 -7.571 19.178 -0.75 1 19.18 ? C3 GOL 1208 A 1 
HETATM 6 O O3 GOL . . . I 5 -6.979 18.726 -1.931 1 18.72 ? O3 GOL 1208 A 1 
HETATM 7 H H11 GOL . . . I 5 -8.951 21.403 0.296 1 26.36 ? H11 GOL 1208 A 1 
HETATM 8 H H12 GOL . . . I 5 -9.141 19.988 0.895 1 26.36 ? H12 GOL 1208 A 1 
HETATM 9 H H2 GOL . . . I 5 -9.509 19.317 -1.536 1 24.9 ? H2 GOL 1208 A 1 
HETATM 10 H H31 GOL . . . I 5 -7.005 19.778 -0.24 1 22.98 ? H31 GOL 1208 A 1 
HETATM 11 H H32 GOL . . . I 5 -7.805 18.462 -0.138 1 22.98 ? H32 GOL 1208 A 1 
HETATM 12 H HO3 GOL . . . I 5 -7.363 19.136 -2.569 1 22.43 ? HO3 GOL 1208 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           36 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           12 
#