data_6DJ2 # _model_server_result.job_id uoxQlHZEYFn-Yw3fRFEx6w _model_server_result.datetime_utc '2024-11-26 06:35:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dj2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6DJ2 # _exptl.entry_id 6DJ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DJ2 _cell.length_a 60.011 _cell.length_b 85.377 _cell.length_c 46.43 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DJ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 60 A ASP 60 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc2 C NA NA . A NA 501 1_555 H O HOH . A HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc3 C NA NA . A NA 501 1_555 H O HOH . A HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc4 C NA NA . A NA 501 1_555 H O HOH . A HOH 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc5 C NA NA . A NA 501 1_555 H O HOH . A HOH 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6DJ2 _atom_sites.fract_transf_matrix[1][1] 0.016664 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011713 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021538 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 501 501 NA NA . D 3 CL A 1 502 511 CL CL . E 4 AB1 B 1 201 201 AB1 AB1 . F 3 CL B 1 202 512 CL CL . G 3 CL B 1 203 513 CL CL . H 5 HOH A 1 601 1145 HOH HOH . H 5 HOH A 2 602 1191 HOH HOH . H 5 HOH A 3 603 1240 HOH HOH . H 5 HOH A 4 604 1175 HOH HOH . H 5 HOH A 5 605 1086 HOH HOH . H 5 HOH A 6 606 1058 HOH HOH . H 5 HOH A 7 607 1149 HOH HOH . H 5 HOH A 8 608 1202 HOH HOH . H 5 HOH A 9 609 1006 HOH HOH . H 5 HOH A 10 610 1109 HOH HOH . H 5 HOH A 11 611 1100 HOH HOH . H 5 HOH A 12 612 1035 HOH HOH . H 5 HOH A 13 613 1042 HOH HOH . H 5 HOH A 14 614 1169 HOH HOH . H 5 HOH A 15 615 1093 HOH HOH . H 5 HOH A 16 616 1065 HOH HOH . H 5 HOH A 17 617 1060 HOH HOH . H 5 HOH A 18 618 1090 HOH HOH . H 5 HOH A 19 619 1254 HOH HOH . H 5 HOH A 20 620 1181 HOH HOH . H 5 HOH A 21 621 1028 HOH HOH . H 5 HOH A 22 622 1249 HOH HOH . H 5 HOH A 23 623 1005 HOH HOH . H 5 HOH A 24 624 1077 HOH HOH . H 5 HOH A 25 625 1107 HOH HOH . H 5 HOH A 26 626 1128 HOH HOH . H 5 HOH A 27 627 1054 HOH HOH . H 5 HOH A 28 628 1119 HOH HOH . H 5 HOH A 29 629 1064 HOH HOH . H 5 HOH A 30 630 1176 HOH HOH . H 5 HOH A 31 631 1200 HOH HOH . H 5 HOH A 32 632 1083 HOH HOH . H 5 HOH A 33 633 1027 HOH HOH . H 5 HOH A 34 634 1147 HOH HOH . H 5 HOH A 35 635 1008 HOH HOH . H 5 HOH A 36 636 1161 HOH HOH . H 5 HOH A 37 637 1098 HOH HOH . H 5 HOH A 38 638 1018 HOH HOH . H 5 HOH A 39 639 1010 HOH HOH . H 5 HOH A 40 640 1126 HOH HOH . H 5 HOH A 41 641 1140 HOH HOH . H 5 HOH A 42 642 1248 HOH HOH . H 5 HOH A 43 643 1002 HOH HOH . H 5 HOH A 44 644 1148 HOH HOH . H 5 HOH A 45 645 1094 HOH HOH . H 5 HOH A 46 646 1132 HOH HOH . H 5 HOH A 47 647 1241 HOH HOH . H 5 HOH A 48 648 1195 HOH HOH . H 5 HOH A 49 649 1127 HOH HOH . H 5 HOH A 50 650 1256 HOH HOH . H 5 HOH A 51 651 1185 HOH HOH . H 5 HOH A 52 652 1003 HOH HOH . H 5 HOH A 53 653 1225 HOH HOH . H 5 HOH A 54 654 1146 HOH HOH . H 5 HOH A 55 655 1041 HOH HOH . H 5 HOH A 56 656 1048 HOH HOH . H 5 HOH A 57 657 1209 HOH HOH . H 5 HOH A 58 658 1034 HOH HOH . H 5 HOH A 59 659 1033 HOH HOH . H 5 HOH A 60 660 1160 HOH HOH . H 5 HOH A 61 661 1142 HOH HOH . H 5 HOH A 62 662 1172 HOH HOH . H 5 HOH A 63 663 1071 HOH HOH . H 5 HOH A 64 664 1066 HOH HOH . H 5 HOH A 65 665 1113 HOH HOH . H 5 HOH A 66 666 1182 HOH HOH . H 5 HOH A 67 667 1189 HOH HOH . H 5 HOH A 68 668 1244 HOH HOH . H 5 HOH A 69 669 1238 HOH HOH . H 5 HOH A 70 670 1084 HOH HOH . H 5 HOH A 71 671 1020 HOH HOH . H 5 HOH A 72 672 1047 HOH HOH . H 5 HOH A 73 673 1007 HOH HOH . H 5 HOH A 74 674 1031 HOH HOH . H 5 HOH A 75 675 1245 HOH HOH . H 5 HOH A 76 676 1023 HOH HOH . H 5 HOH A 77 677 1141 HOH HOH . H 5 HOH A 78 678 1081 HOH HOH . H 5 HOH A 79 679 1052 HOH HOH . H 5 HOH A 80 680 1133 HOH HOH . H 5 HOH A 81 681 1203 HOH HOH . H 5 HOH A 82 682 1279 HOH HOH . H 5 HOH A 83 683 1257 HOH HOH . H 5 HOH A 84 684 1114 HOH HOH . H 5 HOH A 85 685 1266 HOH HOH . H 5 HOH A 86 686 1049 HOH HOH . H 5 HOH A 87 687 1277 HOH HOH . H 5 HOH A 88 688 1082 HOH HOH . H 5 HOH A 89 689 1118 HOH HOH . H 5 HOH A 90 690 1233 HOH HOH . H 5 HOH A 91 691 1170 HOH HOH . H 5 HOH A 92 692 1196 HOH HOH . H 5 HOH A 93 693 1120 HOH HOH . H 5 HOH A 94 694 1258 HOH HOH . H 5 HOH A 95 695 1192 HOH HOH . H 5 HOH A 96 696 1223 HOH HOH . H 5 HOH A 97 697 1207 HOH HOH . H 5 HOH A 98 698 1165 HOH HOH . H 5 HOH A 99 699 1276 HOH HOH . H 5 HOH A 100 700 1155 HOH HOH . H 5 HOH A 101 701 1091 HOH HOH . H 5 HOH A 102 702 1067 HOH HOH . H 5 HOH A 103 703 1221 HOH HOH . H 5 HOH A 104 704 1232 HOH HOH . H 5 HOH A 105 705 1247 HOH HOH . H 5 HOH A 106 706 1263 HOH HOH . H 5 HOH A 107 707 1268 HOH HOH . H 5 HOH A 108 708 1194 HOH HOH . H 5 HOH A 109 709 1255 HOH HOH . H 5 HOH A 110 710 1237 HOH HOH . H 5 HOH A 111 711 1231 HOH HOH . H 5 HOH A 112 712 1162 HOH HOH . H 5 HOH A 113 713 1188 HOH HOH . H 5 HOH A 114 714 1210 HOH HOH . H 5 HOH A 115 715 1152 HOH HOH . H 5 HOH A 116 716 1159 HOH HOH . H 5 HOH A 117 717 1199 HOH HOH . H 5 HOH A 118 718 1236 HOH HOH . H 5 HOH A 119 719 1115 HOH HOH . H 5 HOH A 120 720 1110 HOH HOH . H 5 HOH A 121 721 1246 HOH HOH . H 5 HOH A 122 722 1168 HOH HOH . H 5 HOH A 123 723 1205 HOH HOH . H 5 HOH A 124 724 1187 HOH HOH . H 5 HOH A 125 725 1163 HOH HOH . H 5 HOH A 126 726 1166 HOH HOH . H 5 HOH A 127 727 1193 HOH HOH . H 5 HOH A 128 728 1121 HOH HOH . H 5 HOH A 129 729 1151 HOH HOH . H 5 HOH A 130 730 1179 HOH HOH . H 5 HOH A 131 731 1251 HOH HOH . I 5 HOH B 1 301 1273 HOH HOH . I 5 HOH B 2 302 1178 HOH HOH . I 5 HOH B 3 303 1101 HOH HOH . I 5 HOH B 4 304 1201 HOH HOH . I 5 HOH B 5 305 1270 HOH HOH . I 5 HOH B 6 306 1097 HOH HOH . I 5 HOH B 7 307 1274 HOH HOH . I 5 HOH B 8 308 1122 HOH HOH . I 5 HOH B 9 309 1074 HOH HOH . I 5 HOH B 10 310 1167 HOH HOH . I 5 HOH B 11 311 1164 HOH HOH . I 5 HOH B 12 312 1053 HOH HOH . I 5 HOH B 13 313 1001 HOH HOH . I 5 HOH B 14 314 1139 HOH HOH . I 5 HOH B 15 315 1012 HOH HOH . I 5 HOH B 16 316 1019 HOH HOH . I 5 HOH B 17 317 1025 HOH HOH . I 5 HOH B 18 318 1015 HOH HOH . I 5 HOH B 19 319 1016 HOH HOH . I 5 HOH B 20 320 1037 HOH HOH . I 5 HOH B 21 321 1174 HOH HOH . I 5 HOH B 22 322 1068 HOH HOH . I 5 HOH B 23 323 1224 HOH HOH . I 5 HOH B 24 324 1013 HOH HOH . I 5 HOH B 25 325 1124 HOH HOH . I 5 HOH B 26 326 1136 HOH HOH . I 5 HOH B 27 327 1269 HOH HOH . I 5 HOH B 28 328 1108 HOH HOH . I 5 HOH B 29 329 1089 HOH HOH . I 5 HOH B 30 330 1039 HOH HOH . I 5 HOH B 31 331 1062 HOH HOH . I 5 HOH B 32 332 1095 HOH HOH . I 5 HOH B 33 333 1204 HOH HOH . I 5 HOH B 34 334 1137 HOH HOH . I 5 HOH B 35 335 1011 HOH HOH . I 5 HOH B 36 336 1032 HOH HOH . I 5 HOH B 37 337 1055 HOH HOH . I 5 HOH B 38 338 1102 HOH HOH . I 5 HOH B 39 339 1092 HOH HOH . I 5 HOH B 40 340 1017 HOH HOH . I 5 HOH B 41 341 1009 HOH HOH . I 5 HOH B 42 342 1059 HOH HOH . I 5 HOH B 43 343 1070 HOH HOH . I 5 HOH B 44 344 1022 HOH HOH . I 5 HOH B 45 345 1180 HOH HOH . I 5 HOH B 46 346 1156 HOH HOH . I 5 HOH B 47 347 1158 HOH HOH . I 5 HOH B 48 348 1173 HOH HOH . I 5 HOH B 49 349 1087 HOH HOH . I 5 HOH B 50 350 1063 HOH HOH . I 5 HOH B 51 351 1004 HOH HOH . I 5 HOH B 52 352 1079 HOH HOH . I 5 HOH B 53 353 1051 HOH HOH . I 5 HOH B 54 354 1129 HOH HOH . I 5 HOH B 55 355 1038 HOH HOH . I 5 HOH B 56 356 1239 HOH HOH . I 5 HOH B 57 357 1261 HOH HOH . I 5 HOH B 58 358 1050 HOH HOH . I 5 HOH B 59 359 1112 HOH HOH . I 5 HOH B 60 360 1215 HOH HOH . I 5 HOH B 61 361 1265 HOH HOH . I 5 HOH B 62 362 1026 HOH HOH . I 5 HOH B 63 363 1214 HOH HOH . I 5 HOH B 64 364 1104 HOH HOH . I 5 HOH B 65 365 1262 HOH HOH . I 5 HOH B 66 366 1275 HOH HOH . I 5 HOH B 67 367 1143 HOH HOH . I 5 HOH B 68 368 1078 HOH HOH . I 5 HOH B 69 369 1208 HOH HOH . I 5 HOH B 70 370 1072 HOH HOH . I 5 HOH B 71 371 1153 HOH HOH . I 5 HOH B 72 372 1044 HOH HOH . I 5 HOH B 73 373 1134 HOH HOH . I 5 HOH B 74 374 1029 HOH HOH . I 5 HOH B 75 375 1150 HOH HOH . I 5 HOH B 76 376 1014 HOH HOH . I 5 HOH B 77 377 1171 HOH HOH . I 5 HOH B 78 378 1130 HOH HOH . I 5 HOH B 79 379 1111 HOH HOH . I 5 HOH B 80 380 1211 HOH HOH . I 5 HOH B 81 381 1045 HOH HOH . I 5 HOH B 82 382 1281 HOH HOH . I 5 HOH B 83 383 1061 HOH HOH . I 5 HOH B 84 384 1021 HOH HOH . I 5 HOH B 85 385 1226 HOH HOH . I 5 HOH B 86 386 1250 HOH HOH . I 5 HOH B 87 387 1186 HOH HOH . I 5 HOH B 88 388 1069 HOH HOH . I 5 HOH B 89 389 1024 HOH HOH . I 5 HOH B 90 390 1138 HOH HOH . I 5 HOH B 91 391 1217 HOH HOH . I 5 HOH B 92 392 1213 HOH HOH . I 5 HOH B 93 393 1030 HOH HOH . I 5 HOH B 94 394 1036 HOH HOH . I 5 HOH B 95 395 1259 HOH HOH . I 5 HOH B 96 396 1057 HOH HOH . I 5 HOH B 97 397 1253 HOH HOH . I 5 HOH B 98 398 1123 HOH HOH . I 5 HOH B 99 399 1073 HOH HOH . I 5 HOH B 100 400 1088 HOH HOH . I 5 HOH B 101 401 1131 HOH HOH . I 5 HOH B 102 402 1183 HOH HOH . I 5 HOH B 103 403 1040 HOH HOH . I 5 HOH B 104 404 1235 HOH HOH . I 5 HOH B 105 405 1076 HOH HOH . I 5 HOH B 106 406 1080 HOH HOH . I 5 HOH B 107 407 1278 HOH HOH . I 5 HOH B 108 408 1228 HOH HOH . I 5 HOH B 109 409 1135 HOH HOH . I 5 HOH B 110 410 1043 HOH HOH . I 5 HOH B 111 411 1212 HOH HOH . I 5 HOH B 112 412 1177 HOH HOH . I 5 HOH B 113 413 1280 HOH HOH . I 5 HOH B 114 414 1117 HOH HOH . I 5 HOH B 115 415 1099 HOH HOH . I 5 HOH B 116 416 1144 HOH HOH . I 5 HOH B 117 417 1157 HOH HOH . I 5 HOH B 118 418 1234 HOH HOH . I 5 HOH B 119 419 1154 HOH HOH . I 5 HOH B 120 420 1116 HOH HOH . I 5 HOH B 121 421 1220 HOH HOH . I 5 HOH B 122 422 1085 HOH HOH . I 5 HOH B 123 423 1096 HOH HOH . I 5 HOH B 124 424 1243 HOH HOH . I 5 HOH B 125 425 1184 HOH HOH . I 5 HOH B 126 426 1222 HOH HOH . I 5 HOH B 127 427 1105 HOH HOH . I 5 HOH B 128 428 1106 HOH HOH . I 5 HOH B 129 429 1219 HOH HOH . I 5 HOH B 130 430 1267 HOH HOH . I 5 HOH B 131 431 1103 HOH HOH . I 5 HOH B 132 432 1260 HOH HOH . I 5 HOH B 133 433 1075 HOH HOH . I 5 HOH B 134 434 1056 HOH HOH . I 5 HOH B 135 435 1216 HOH HOH . I 5 HOH B 136 436 1242 HOH HOH . I 5 HOH B 137 437 1252 HOH HOH . I 5 HOH B 138 438 1264 HOH HOH . I 5 HOH B 139 439 1046 HOH HOH . I 5 HOH B 140 440 1230 HOH HOH . I 5 HOH B 141 441 1190 HOH HOH . I 5 HOH B 142 442 1198 HOH HOH . I 5 HOH B 143 443 1197 HOH HOH . I 5 HOH B 144 444 1206 HOH HOH . I 5 HOH B 145 445 1271 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.723 _atom_site.Cartn_y 3.285 _atom_site.Cartn_z 47.747 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.93 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #