data_6DJ3 # _model_server_result.job_id Bz7xKyjr_AOtQm0F_Mvf7g _model_server_result.datetime_utc '2024-10-19 10:36:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dj3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":902}' # _entry.id 6DJ3 # _exptl.entry_id 6DJ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6DJ3 _cell.length_a 110.582 _cell.length_b 110.582 _cell.length_c 84.604 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DJ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,D,E,G 1 1 A,C,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_564 -y,x-y+1,z-1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -55.291 95.766821 -28.201333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 6DJ3 _atom_sites.fract_transf_matrix[1][1] 0.009043 _atom_sites.fract_transf_matrix[1][2] 0.005221 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010442 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01182 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 901 25 EDO EDO . D 2 EDO B 1 901 24 EDO EDO . E 2 EDO B 1 902 26 EDO EDO . F 3 HOH A 1 1001 3 HOH HOH . F 3 HOH A 2 1002 5 HOH HOH . F 3 HOH A 3 1003 21 HOH HOH . F 3 HOH A 4 1004 4 HOH HOH . F 3 HOH A 5 1005 20 HOH HOH . F 3 HOH A 6 1006 15 HOH HOH . F 3 HOH A 7 1007 13 HOH HOH . F 3 HOH A 8 1008 19 HOH HOH . F 3 HOH A 9 1009 7 HOH HOH . F 3 HOH A 10 1010 16 HOH HOH . F 3 HOH A 11 1011 14 HOH HOH . F 3 HOH A 12 1012 12 HOH HOH . F 3 HOH A 13 1013 11 HOH HOH . G 3 HOH B 1 1001 9 HOH HOH . G 3 HOH B 2 1002 2 HOH HOH . G 3 HOH B 3 1003 8 HOH HOH . G 3 HOH B 4 1004 23 HOH HOH . G 3 HOH B 5 1005 1 HOH HOH . G 3 HOH B 6 1006 10 HOH HOH . G 3 HOH B 7 1007 17 HOH HOH . G 3 HOH B 8 1008 6 HOH HOH . G 3 HOH B 9 1009 22 HOH HOH . G 3 HOH B 10 1010 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 2 -65.96 13.889 -47.611 1 67.13 ? C1 EDO 902 B 1 HETATM 2 O O1 EDO . . . E 2 -66.904 14.443 -46.688 1 66.23 ? O1 EDO 902 B 1 HETATM 3 C C2 EDO . . . E 2 -64.567 13.897 -46.991 1 63.04 ? C2 EDO 902 B 1 HETATM 4 O O2 EDO . . . E 2 -63.633 13.288 -47.891 1 59.92 ? O2 EDO 902 B 1 HETATM 5 H H11 EDO . . . E 2 -66.246 12.865 -47.861 1 80.69 ? H11 EDO 902 B 1 HETATM 6 H H12 EDO . . . E 2 -65.956 14.475 -48.532 1 80.69 ? H12 EDO 902 B 1 HETATM 7 H HO1 EDO . . . E 2 -67.785 14.436 -47.086 1 79.61 ? HO1 EDO 902 B 1 HETATM 8 H H21 EDO . . . E 2 -64.262 14.924 -46.783 1 75.78 ? H21 EDO 902 B 1 HETATM 9 H H22 EDO . . . E 2 -64.58 13.348 -46.047 1 75.78 ? H22 EDO 902 B 1 HETATM 10 H HO2 EDO . . . E 2 -62.752 13.295 -47.494 1 72.03 ? HO2 EDO 902 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #