data_6DJK # _model_server_result.job_id podf-sQhgsat9IAYYXzpgQ _model_server_result.datetime_utc '2024-11-16 17:34:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6djk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 6DJK # _exptl.entry_id 6DJK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 121.46 _cell.angle_gamma 90 _cell.entry_id 6DJK _cell.length_a 147.5 _cell.length_b 43.73 _cell.length_c 83.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DJK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_657 -x+1,y,-z+2 -1 0 0 0 1 0 0 0 -1 59.924646 0 143.134194 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ACE 1 B ACE 1001 1_555 B N MVA 2 B MVA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 B C MVA 2 B MVA 1002 1_555 B N MP8 3 B MP8 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C MP8 3 B MP8 1003 1_555 B N NZC 4 B NZC 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 B C NZC 4 B NZC 1004 1_555 B N LEU 5 B LEU 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 B OG1 NZC 4 B NZC 1004 1_555 B C GLY 11 B GLY 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? covale ? covale6 B C LEU 5 B LEU 1005 1_555 B N MP8 6 B MP8 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 B C MP8 6 B MP8 1006 1_555 B N LEU 7 B LEU 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B C LEU 7 B LEU 1007 1_555 B N MVA 8 B MVA 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 B C MVA 8 B MVA 1008 1_555 B N PRO 9 B PRO 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale10 B C PRO 9 B PRO 1009 1_555 B N MLU 10 B MLU 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 B C MLU 10 B MLU 1010 1_555 B N GLY 11 B GLY 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 89 n n C1 C2 EDO sing 90 n n C1 H11 EDO sing 91 n n C1 H12 EDO sing 92 n n O1 HO1 EDO sing 93 n n C2 O2 EDO sing 94 n n C2 H21 EDO sing 95 n n C2 H22 EDO sing 96 n n O2 HO2 EDO sing 97 n n # _atom_sites.entry_id 6DJK _atom_sites.fract_transf_matrix[1][1] 0.00678 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004148 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022868 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013973 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 500 500 EDO EDO . D 3 EDO A 1 501 501 EDO EDO . E 4 PEG A 1 502 502 PEG PEG . F 5 HOH A 1 601 258 HOH HOH . F 5 HOH A 2 602 254 HOH HOH . F 5 HOH A 3 603 118 HOH HOH . F 5 HOH A 4 604 38 HOH HOH . F 5 HOH A 5 605 74 HOH HOH . F 5 HOH A 6 606 251 HOH HOH . F 5 HOH A 7 607 26 HOH HOH . F 5 HOH A 8 608 52 HOH HOH . F 5 HOH A 9 609 192 HOH HOH . F 5 HOH A 10 610 80 HOH HOH . F 5 HOH A 11 611 285 HOH HOH . F 5 HOH A 12 612 142 HOH HOH . F 5 HOH A 13 613 283 HOH HOH . F 5 HOH A 14 614 263 HOH HOH . F 5 HOH A 15 615 214 HOH HOH . F 5 HOH A 16 616 294 HOH HOH . F 5 HOH A 17 617 104 HOH HOH . F 5 HOH A 18 618 44 HOH HOH . F 5 HOH A 19 619 276 HOH HOH . F 5 HOH A 20 620 117 HOH HOH . F 5 HOH A 21 621 154 HOH HOH . F 5 HOH A 22 622 33 HOH HOH . F 5 HOH A 23 623 70 HOH HOH . F 5 HOH A 24 624 229 HOH HOH . F 5 HOH A 25 625 75 HOH HOH . F 5 HOH A 26 626 83 HOH HOH . F 5 HOH A 27 627 127 HOH HOH . F 5 HOH A 28 628 235 HOH HOH . F 5 HOH A 29 629 248 HOH HOH . F 5 HOH A 30 630 243 HOH HOH . F 5 HOH A 31 631 198 HOH HOH . F 5 HOH A 32 632 95 HOH HOH . F 5 HOH A 33 633 250 HOH HOH . F 5 HOH A 34 634 40 HOH HOH . F 5 HOH A 35 635 244 HOH HOH . F 5 HOH A 36 636 113 HOH HOH . F 5 HOH A 37 637 47 HOH HOH . F 5 HOH A 38 638 128 HOH HOH . F 5 HOH A 39 639 34 HOH HOH . F 5 HOH A 40 640 232 HOH HOH . F 5 HOH A 41 641 288 HOH HOH . F 5 HOH A 42 642 19 HOH HOH . F 5 HOH A 43 643 8 HOH HOH . F 5 HOH A 44 644 174 HOH HOH . F 5 HOH A 45 645 182 HOH HOH . F 5 HOH A 46 646 126 HOH HOH . F 5 HOH A 47 647 93 HOH HOH . F 5 HOH A 48 648 121 HOH HOH . F 5 HOH A 49 649 12 HOH HOH . F 5 HOH A 50 650 264 HOH HOH . F 5 HOH A 51 651 160 HOH HOH . F 5 HOH A 52 652 37 HOH HOH . F 5 HOH A 53 653 200 HOH HOH . F 5 HOH A 54 654 125 HOH HOH . F 5 HOH A 55 655 7 HOH HOH . F 5 HOH A 56 656 57 HOH HOH . F 5 HOH A 57 657 105 HOH HOH . F 5 HOH A 58 658 103 HOH HOH . F 5 HOH A 59 659 249 HOH HOH . F 5 HOH A 60 660 61 HOH HOH . F 5 HOH A 61 661 42 HOH HOH . F 5 HOH A 62 662 143 HOH HOH . F 5 HOH A 63 663 99 HOH HOH . F 5 HOH A 64 664 11 HOH HOH . F 5 HOH A 65 665 191 HOH HOH . F 5 HOH A 66 666 156 HOH HOH . F 5 HOH A 67 667 18 HOH HOH . F 5 HOH A 68 668 122 HOH HOH . F 5 HOH A 69 669 178 HOH HOH . F 5 HOH A 70 670 78 HOH HOH . F 5 HOH A 71 671 76 HOH HOH . F 5 HOH A 72 672 208 HOH HOH . F 5 HOH A 73 673 218 HOH HOH . F 5 HOH A 74 674 4 HOH HOH . F 5 HOH A 75 675 240 HOH HOH . F 5 HOH A 76 676 79 HOH HOH . F 5 HOH A 77 677 65 HOH HOH . F 5 HOH A 78 678 94 HOH HOH . F 5 HOH A 79 679 3 HOH HOH . F 5 HOH A 80 680 102 HOH HOH . F 5 HOH A 81 681 86 HOH HOH . F 5 HOH A 82 682 255 HOH HOH . F 5 HOH A 83 683 62 HOH HOH . F 5 HOH A 84 684 27 HOH HOH . F 5 HOH A 85 685 92 HOH HOH . F 5 HOH A 86 686 98 HOH HOH . F 5 HOH A 87 687 130 HOH HOH . F 5 HOH A 88 688 49 HOH HOH . F 5 HOH A 89 689 72 HOH HOH . F 5 HOH A 90 690 2 HOH HOH . F 5 HOH A 91 691 5 HOH HOH . F 5 HOH A 92 692 183 HOH HOH . F 5 HOH A 93 693 96 HOH HOH . F 5 HOH A 94 694 55 HOH HOH . F 5 HOH A 95 695 28 HOH HOH . F 5 HOH A 96 696 153 HOH HOH . F 5 HOH A 97 697 9 HOH HOH . F 5 HOH A 98 698 110 HOH HOH . F 5 HOH A 99 699 17 HOH HOH . F 5 HOH A 100 700 211 HOH HOH . F 5 HOH A 101 701 69 HOH HOH . F 5 HOH A 102 702 6 HOH HOH . F 5 HOH A 103 703 216 HOH HOH . F 5 HOH A 104 704 241 HOH HOH . F 5 HOH A 105 705 87 HOH HOH . F 5 HOH A 106 706 35 HOH HOH . F 5 HOH A 107 707 25 HOH HOH . F 5 HOH A 108 708 286 HOH HOH . F 5 HOH A 109 709 262 HOH HOH . F 5 HOH A 110 710 58 HOH HOH . F 5 HOH A 111 711 23 HOH HOH . F 5 HOH A 112 712 29 HOH HOH . F 5 HOH A 113 713 270 HOH HOH . F 5 HOH A 114 714 48 HOH HOH . F 5 HOH A 115 715 180 HOH HOH . F 5 HOH A 116 716 261 HOH HOH . F 5 HOH A 117 717 188 HOH HOH . F 5 HOH A 118 718 224 HOH HOH . F 5 HOH A 119 719 213 HOH HOH . F 5 HOH A 120 720 68 HOH HOH . F 5 HOH A 121 721 39 HOH HOH . F 5 HOH A 122 722 14 HOH HOH . F 5 HOH A 123 723 116 HOH HOH . F 5 HOH A 124 724 231 HOH HOH . F 5 HOH A 125 725 237 HOH HOH . F 5 HOH A 126 726 234 HOH HOH . F 5 HOH A 127 727 269 HOH HOH . F 5 HOH A 128 728 173 HOH HOH . F 5 HOH A 129 729 147 HOH HOH . F 5 HOH A 130 730 89 HOH HOH . F 5 HOH A 131 731 10 HOH HOH . F 5 HOH A 132 732 21 HOH HOH . F 5 HOH A 133 733 267 HOH HOH . F 5 HOH A 134 734 81 HOH HOH . F 5 HOH A 135 735 111 HOH HOH . F 5 HOH A 136 736 41 HOH HOH . F 5 HOH A 137 737 100 HOH HOH . F 5 HOH A 138 738 150 HOH HOH . F 5 HOH A 139 739 123 HOH HOH . F 5 HOH A 140 740 16 HOH HOH . F 5 HOH A 141 741 163 HOH HOH . F 5 HOH A 142 742 107 HOH HOH . F 5 HOH A 143 743 138 HOH HOH . F 5 HOH A 144 744 212 HOH HOH . F 5 HOH A 145 745 66 HOH HOH . F 5 HOH A 146 746 22 HOH HOH . F 5 HOH A 147 747 46 HOH HOH . F 5 HOH A 148 748 292 HOH HOH . F 5 HOH A 149 749 101 HOH HOH . F 5 HOH A 150 750 256 HOH HOH . F 5 HOH A 151 751 215 HOH HOH . F 5 HOH A 152 752 280 HOH HOH . F 5 HOH A 153 753 279 HOH HOH . F 5 HOH A 154 754 158 HOH HOH . F 5 HOH A 155 755 84 HOH HOH . F 5 HOH A 156 756 257 HOH HOH . F 5 HOH A 157 757 59 HOH HOH . F 5 HOH A 158 758 209 HOH HOH . F 5 HOH A 159 759 230 HOH HOH . F 5 HOH A 160 760 205 HOH HOH . F 5 HOH A 161 761 233 HOH HOH . F 5 HOH A 162 762 106 HOH HOH . F 5 HOH A 163 763 120 HOH HOH . F 5 HOH A 164 764 184 HOH HOH . F 5 HOH A 165 765 51 HOH HOH . F 5 HOH A 166 766 210 HOH HOH . F 5 HOH A 167 767 245 HOH HOH . F 5 HOH A 168 768 226 HOH HOH . F 5 HOH A 169 769 221 HOH HOH . F 5 HOH A 170 770 207 HOH HOH . F 5 HOH A 171 771 190 HOH HOH . F 5 HOH A 172 772 63 HOH HOH . F 5 HOH A 173 773 119 HOH HOH . F 5 HOH A 174 774 115 HOH HOH . F 5 HOH A 175 775 169 HOH HOH . F 5 HOH A 176 776 43 HOH HOH . F 5 HOH A 177 777 88 HOH HOH . F 5 HOH A 178 778 242 HOH HOH . F 5 HOH A 179 779 144 HOH HOH . F 5 HOH A 180 780 45 HOH HOH . F 5 HOH A 181 781 152 HOH HOH . F 5 HOH A 182 782 186 HOH HOH . F 5 HOH A 183 783 71 HOH HOH . F 5 HOH A 184 784 204 HOH HOH . F 5 HOH A 185 785 275 HOH HOH . F 5 HOH A 186 786 85 HOH HOH . F 5 HOH A 187 787 265 HOH HOH . F 5 HOH A 188 788 77 HOH HOH . F 5 HOH A 189 789 266 HOH HOH . F 5 HOH A 190 790 238 HOH HOH . F 5 HOH A 191 791 177 HOH HOH . F 5 HOH A 192 792 277 HOH HOH . F 5 HOH A 193 793 137 HOH HOH . F 5 HOH A 194 794 291 HOH HOH . F 5 HOH A 195 795 82 HOH HOH . F 5 HOH A 196 796 201 HOH HOH . F 5 HOH A 197 797 135 HOH HOH . F 5 HOH A 198 798 239 HOH HOH . F 5 HOH A 199 799 281 HOH HOH . F 5 HOH A 200 800 149 HOH HOH . F 5 HOH A 201 801 124 HOH HOH . F 5 HOH A 202 802 246 HOH HOH . F 5 HOH A 203 803 197 HOH HOH . F 5 HOH A 204 804 268 HOH HOH . F 5 HOH A 205 805 273 HOH HOH . F 5 HOH A 206 806 259 HOH HOH . F 5 HOH A 207 807 179 HOH HOH . F 5 HOH A 208 808 220 HOH HOH . F 5 HOH A 209 809 228 HOH HOH . F 5 HOH A 210 810 148 HOH HOH . F 5 HOH A 211 811 271 HOH HOH . F 5 HOH A 212 812 157 HOH HOH . F 5 HOH A 213 813 222 HOH HOH . F 5 HOH A 214 814 202 HOH HOH . F 5 HOH A 215 815 181 HOH HOH . F 5 HOH A 216 816 223 HOH HOH . F 5 HOH A 217 817 284 HOH HOH . F 5 HOH A 218 818 272 HOH HOH . F 5 HOH A 219 819 175 HOH HOH . F 5 HOH A 220 820 274 HOH HOH . F 5 HOH A 221 821 293 HOH HOH . F 5 HOH A 222 822 151 HOH HOH . F 5 HOH A 223 823 164 HOH HOH . F 5 HOH A 224 824 278 HOH HOH . F 5 HOH A 225 825 67 HOH HOH . F 5 HOH A 226 826 166 HOH HOH . F 5 HOH A 227 827 260 HOH HOH . F 5 HOH A 228 828 227 HOH HOH . F 5 HOH A 229 829 236 HOH HOH . F 5 HOH A 230 830 176 HOH HOH . F 5 HOH A 231 831 112 HOH HOH . F 5 HOH A 232 832 140 HOH HOH . F 5 HOH A 233 833 187 HOH HOH . F 5 HOH A 234 834 53 HOH HOH . F 5 HOH A 235 835 195 HOH HOH . F 5 HOH A 236 836 165 HOH HOH . F 5 HOH A 237 837 287 HOH HOH . F 5 HOH A 238 838 206 HOH HOH . F 5 HOH A 239 839 189 HOH HOH . F 5 HOH A 240 840 289 HOH HOH . G 5 HOH B 1 1101 217 HOH HOH . G 5 HOH B 2 1102 90 HOH HOH . G 5 HOH B 3 1103 219 HOH HOH . G 5 HOH B 4 1104 32 HOH HOH . G 5 HOH B 5 1105 290 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 2.934 34.1 64.263 1 53.81 ? C1 EDO 500 A 1 HETATM 2 O O1 EDO . . . C 3 2.33 35.091 65.101 1 57.12 ? O1 EDO 500 A 1 HETATM 3 C C2 EDO . . . C 3 1.93 32.993 63.959 1 46.92 ? C2 EDO 500 A 1 HETATM 4 O O2 EDO . . . C 3 1.985 32.623 62.571 1 43.41 ? O2 EDO 500 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #