data_6DJT
#
_model_server_result.job_id            DqPUQAMDfXi-Q3u6voDiGQ 
_model_server_result.datetime_utc      '2025-02-05 13:53:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6djt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    6DJT 
#
_exptl.entry_id    6DJT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DJT 
_cell.length_a            58.26 
_cell.length_b            80.109 
_cell.length_c            86.456 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DJT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TYR 60 A TYR 40 1_555 A N KPI 61 A KPI 41 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C TYR 60 A TYR 40 1_555 A N KPI 61 A KPI 41 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 A C KPI 61 A KPI 41 1_555 A N SER 62 A SER 42 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 A C KPI 61 A KPI 41 1_555 A N SER 62 A SER 42 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A SG CYS 46 A CYS 26 1_555 B FE4 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc2 A SG CYS 59 A CYS 39 1_555 B FE1 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc3 A NZ KPI 61 A KPI 41 1_555 B FE2 SF4 . A SF4 401 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc4 A NZ KPI 61 A KPI 41 1_555 B FE2 SF4 . A SF4 401 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.541 ? 
metalc ? metalc5 A O2 KPI 61 A KPI 41 1_555 B FE2 SF4 . A SF4 401 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc6 A SG CYS 72 A CYS 52 1_555 B FE3 SF4 . A SF4 401 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc7 A SG CYS 82 A CYS 62 1_555 M FE2 FS0 . A FS0 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc8 A SG CYS 86 A CYS 66 1_555 M FE1 FS0 . A FS0 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc9 A SG CYS 89 A CYS 69 1_555 M FE1 FS0 . A FS0 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 135 n n 
C1 C2 GOL sing 136 n n 
C1 H11 GOL sing 137 n n 
C1 H12 GOL sing 138 n n 
O1 HO1 GOL sing 139 n n 
C2 O2 GOL sing 140 n n 
C2 C3 GOL sing 141 n n 
C2 H2 GOL sing 142 n n 
O2 HO2 GOL sing 143 n n 
C3 O3 GOL sing 144 n n 
C3 H31 GOL sing 145 n n 
C3 H32 GOL sing 146 n n 
O3 HO3 GOL sing 147 n n 
#
_atom_sites.entry_id                     6DJT 
_atom_sites.fract_transf_matrix[1][1]    0.017164 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012483 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011567 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SF4 A 1 401 1 SF4 SF4 . 
C 3 GOL A 1 402 1 GOL GOL . 
D 3 GOL A 1 403 3 GOL GOL . 
E 3 GOL A 1 404 4 GOL GOL . 
F 3 GOL A 1 405 5 GOL GOL . 
G 3 GOL A 1 406 6 GOL GOL . 
H 3 GOL A 1 407 9 GOL GOL . 
I 3 GOL A 1 408 14 GOL GOL . 
J 3 GOL A 1 409 15 GOL GOL . 
K 4 PEG A 1 410 2 PEG PEG . 
L 4 PEG A 1 411 6 PEG PEG . 
M 5 FS0 A 1 412 1 FS0 F2S . 
N 6 HOH A 1 501 110 HOH HOH . 
N 6 HOH A 2 502 196 HOH HOH . 
N 6 HOH A 3 503 61 HOH HOH . 
N 6 HOH A 4 504 228 HOH HOH . 
N 6 HOH A 5 505 179 HOH HOH . 
N 6 HOH A 6 506 18 HOH HOH . 
N 6 HOH A 7 507 103 HOH HOH . 
N 6 HOH A 8 508 122 HOH HOH . 
N 6 HOH A 9 509 124 HOH HOH . 
N 6 HOH A 10 510 97 HOH HOH . 
N 6 HOH A 11 511 15 HOH HOH . 
N 6 HOH A 12 512 113 HOH HOH . 
N 6 HOH A 13 513 41 HOH HOH . 
N 6 HOH A 14 514 112 HOH HOH . 
N 6 HOH A 15 515 48 HOH HOH . 
N 6 HOH A 16 516 89 HOH HOH . 
N 6 HOH A 17 517 125 HOH HOH . 
N 6 HOH A 18 518 115 HOH HOH . 
N 6 HOH A 19 519 49 HOH HOH . 
N 6 HOH A 20 520 207 HOH HOH . 
N 6 HOH A 21 521 183 HOH HOH . 
N 6 HOH A 22 522 195 HOH HOH . 
N 6 HOH A 23 523 131 HOH HOH . 
N 6 HOH A 24 524 75 HOH HOH . 
N 6 HOH A 25 525 34 HOH HOH . 
N 6 HOH A 26 526 96 HOH HOH . 
N 6 HOH A 27 527 47 HOH HOH . 
N 6 HOH A 28 528 99 HOH HOH . 
N 6 HOH A 29 529 12 HOH HOH . 
N 6 HOH A 30 530 191 HOH HOH . 
N 6 HOH A 31 531 6 HOH HOH . 
N 6 HOH A 32 532 62 HOH HOH . 
N 6 HOH A 33 533 2 HOH HOH . 
N 6 HOH A 34 534 90 HOH HOH . 
N 6 HOH A 35 535 40 HOH HOH . 
N 6 HOH A 36 536 23 HOH HOH . 
N 6 HOH A 37 537 104 HOH HOH . 
N 6 HOH A 38 538 33 HOH HOH . 
N 6 HOH A 39 539 222 HOH HOH . 
N 6 HOH A 40 540 8 HOH HOH . 
N 6 HOH A 41 541 4 HOH HOH . 
N 6 HOH A 42 542 3 HOH HOH . 
N 6 HOH A 43 543 66 HOH HOH . 
N 6 HOH A 44 544 154 HOH HOH . 
N 6 HOH A 45 545 231 HOH HOH . 
N 6 HOH A 46 546 9 HOH HOH . 
N 6 HOH A 47 547 114 HOH HOH . 
N 6 HOH A 48 548 145 HOH HOH . 
N 6 HOH A 49 549 25 HOH HOH . 
N 6 HOH A 50 550 5 HOH HOH . 
N 6 HOH A 51 551 147 HOH HOH . 
N 6 HOH A 52 552 225 HOH HOH . 
N 6 HOH A 53 553 11 HOH HOH . 
N 6 HOH A 54 554 43 HOH HOH . 
N 6 HOH A 55 555 109 HOH HOH . 
N 6 HOH A 56 556 19 HOH HOH . 
N 6 HOH A 57 557 58 HOH HOH . 
N 6 HOH A 58 558 71 HOH HOH . 
N 6 HOH A 59 559 28 HOH HOH . 
N 6 HOH A 60 560 67 HOH HOH . 
N 6 HOH A 61 561 213 HOH HOH . 
N 6 HOH A 62 562 36 HOH HOH . 
N 6 HOH A 63 563 39 HOH HOH . 
N 6 HOH A 64 564 88 HOH HOH . 
N 6 HOH A 65 565 52 HOH HOH . 
N 6 HOH A 66 566 233 HOH HOH . 
N 6 HOH A 67 567 192 HOH HOH . 
N 6 HOH A 68 568 190 HOH HOH . 
N 6 HOH A 69 569 55 HOH HOH . 
N 6 HOH A 70 570 1 HOH HOH . 
N 6 HOH A 71 571 169 HOH HOH . 
N 6 HOH A 72 572 22 HOH HOH . 
N 6 HOH A 73 573 37 HOH HOH . 
N 6 HOH A 74 574 201 HOH HOH . 
N 6 HOH A 75 575 108 HOH HOH . 
N 6 HOH A 76 576 219 HOH HOH . 
N 6 HOH A 77 577 87 HOH HOH . 
N 6 HOH A 78 578 117 HOH HOH . 
N 6 HOH A 79 579 153 HOH HOH . 
N 6 HOH A 80 580 185 HOH HOH . 
N 6 HOH A 81 581 13 HOH HOH . 
N 6 HOH A 82 582 165 HOH HOH . 
N 6 HOH A 83 583 16 HOH HOH . 
N 6 HOH A 84 584 111 HOH HOH . 
N 6 HOH A 85 585 29 HOH HOH . 
N 6 HOH A 86 586 7 HOH HOH . 
N 6 HOH A 87 587 102 HOH HOH . 
N 6 HOH A 88 588 81 HOH HOH . 
N 6 HOH A 89 589 101 HOH HOH . 
N 6 HOH A 90 590 148 HOH HOH . 
N 6 HOH A 91 591 98 HOH HOH . 
N 6 HOH A 92 592 54 HOH HOH . 
N 6 HOH A 93 593 60 HOH HOH . 
N 6 HOH A 94 594 68 HOH HOH . 
N 6 HOH A 95 595 65 HOH HOH . 
N 6 HOH A 96 596 152 HOH HOH . 
N 6 HOH A 97 597 93 HOH HOH . 
N 6 HOH A 98 598 45 HOH HOH . 
N 6 HOH A 99 599 57 HOH HOH . 
N 6 HOH A 100 600 10 HOH HOH . 
N 6 HOH A 101 601 92 HOH HOH . 
N 6 HOH A 102 602 50 HOH HOH . 
N 6 HOH A 103 603 24 HOH HOH . 
N 6 HOH A 104 604 35 HOH HOH . 
N 6 HOH A 105 605 27 HOH HOH . 
N 6 HOH A 106 606 129 HOH HOH . 
N 6 HOH A 107 607 159 HOH HOH . 
N 6 HOH A 108 608 95 HOH HOH . 
N 6 HOH A 109 609 21 HOH HOH . 
N 6 HOH A 110 610 79 HOH HOH . 
N 6 HOH A 111 611 155 HOH HOH . 
N 6 HOH A 112 612 177 HOH HOH . 
N 6 HOH A 113 613 17 HOH HOH . 
N 6 HOH A 114 614 86 HOH HOH . 
N 6 HOH A 115 615 51 HOH HOH . 
N 6 HOH A 116 616 182 HOH HOH . 
N 6 HOH A 117 617 216 HOH HOH . 
N 6 HOH A 118 618 74 HOH HOH . 
N 6 HOH A 119 619 31 HOH HOH . 
N 6 HOH A 120 620 116 HOH HOH . 
N 6 HOH A 121 621 160 HOH HOH . 
N 6 HOH A 122 622 162 HOH HOH . 
N 6 HOH A 123 623 189 HOH HOH . 
N 6 HOH A 124 624 120 HOH HOH . 
N 6 HOH A 125 625 100 HOH HOH . 
N 6 HOH A 126 626 85 HOH HOH . 
N 6 HOH A 127 627 136 HOH HOH . 
N 6 HOH A 128 628 163 HOH HOH . 
N 6 HOH A 129 629 144 HOH HOH . 
N 6 HOH A 130 630 46 HOH HOH . 
N 6 HOH A 131 631 232 HOH HOH . 
N 6 HOH A 132 632 32 HOH HOH . 
N 6 HOH A 133 633 174 HOH HOH . 
N 6 HOH A 134 634 142 HOH HOH . 
N 6 HOH A 135 635 14 HOH HOH . 
N 6 HOH A 136 636 218 HOH HOH . 
N 6 HOH A 137 637 149 HOH HOH . 
N 6 HOH A 138 638 171 HOH HOH . 
N 6 HOH A 139 639 150 HOH HOH . 
N 6 HOH A 140 640 229 HOH HOH . 
N 6 HOH A 141 641 180 HOH HOH . 
N 6 HOH A 142 642 53 HOH HOH . 
N 6 HOH A 143 643 167 HOH HOH . 
N 6 HOH A 144 644 123 HOH HOH . 
N 6 HOH A 145 645 188 HOH HOH . 
N 6 HOH A 146 646 210 HOH HOH . 
N 6 HOH A 147 647 166 HOH HOH . 
N 6 HOH A 148 648 94 HOH HOH . 
N 6 HOH A 149 649 151 HOH HOH . 
N 6 HOH A 150 650 130 HOH HOH . 
N 6 HOH A 151 651 227 HOH HOH . 
N 6 HOH A 152 652 204 HOH HOH . 
N 6 HOH A 153 653 172 HOH HOH . 
N 6 HOH A 154 654 215 HOH HOH . 
N 6 HOH A 155 655 138 HOH HOH . 
N 6 HOH A 156 656 72 HOH HOH . 
N 6 HOH A 157 657 198 HOH HOH . 
N 6 HOH A 158 658 30 HOH HOH . 
N 6 HOH A 159 659 223 HOH HOH . 
N 6 HOH A 160 660 209 HOH HOH . 
N 6 HOH A 161 661 139 HOH HOH . 
N 6 HOH A 162 662 107 HOH HOH . 
N 6 HOH A 163 663 146 HOH HOH . 
N 6 HOH A 164 664 194 HOH HOH . 
N 6 HOH A 165 665 119 HOH HOH . 
N 6 HOH A 166 666 168 HOH HOH . 
N 6 HOH A 167 667 56 HOH HOH . 
N 6 HOH A 168 668 173 HOH HOH . 
N 6 HOH A 169 669 214 HOH HOH . 
N 6 HOH A 170 670 202 HOH HOH . 
N 6 HOH A 171 671 63 HOH HOH . 
N 6 HOH A 172 672 226 HOH HOH . 
N 6 HOH A 173 673 211 HOH HOH . 
N 6 HOH A 174 674 156 HOH HOH . 
N 6 HOH A 175 675 132 HOH HOH . 
N 6 HOH A 176 676 70 HOH HOH . 
N 6 HOH A 177 677 178 HOH HOH . 
N 6 HOH A 178 678 197 HOH HOH . 
N 6 HOH A 179 679 181 HOH HOH . 
N 6 HOH A 180 680 212 HOH HOH . 
N 6 HOH A 181 681 161 HOH HOH . 
N 6 HOH A 182 682 140 HOH HOH . 
N 6 HOH A 183 683 234 HOH HOH . 
N 6 HOH A 184 684 164 HOH HOH . 
N 6 HOH A 185 685 230 HOH HOH . 
N 6 HOH A 186 686 186 HOH HOH . 
N 6 HOH A 187 687 158 HOH HOH . 
N 6 HOH A 188 688 64 HOH HOH . 
N 6 HOH A 189 689 59 HOH HOH . 
N 6 HOH A 190 690 118 HOH HOH . 
N 6 HOH A 191 691 205 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 6.129 5.299 -35.255 1 35.91 ? C1 GOL 402 A 1 
HETATM 2 O O1 GOL . . . C 3 7.465 5.62 -35.677 1 29.98 ? O1 GOL 402 A 1 
HETATM 3 C C2 GOL . . . C 3 5.215 6.522 -35.268 1 37.95 ? C2 GOL 402 A 1 
HETATM 4 O O2 GOL . . . C 3 5.483 7.287 -36.455 1 41.12 ? O2 GOL 402 A 1 
HETATM 5 C C3 GOL . . . C 3 5.427 7.386 -34.023 1 41.12 ? C3 GOL 402 A 1 
HETATM 6 O O3 GOL . . . C 3 4.845 6.804 -32.828 1 32.34 ? O3 GOL 402 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#