data_6DJZ # _model_server_result.job_id X54bI0c5LQm0U03l3quCqg _model_server_result.datetime_utc '2024-11-22 22:29:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6djz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":301}' # _entry.id 6DJZ # _exptl.entry_id 6DJZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 375.864 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[4-(4-chlorophenyl)-4-hydroxypiperidin-1-yl]-1-(4-fluorophenyl)butan-1-one _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DJZ _cell.length_a 85.556 _cell.length_b 126.062 _cell.length_c 109.702 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DJZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 Q N N ? 2 W N N # _chem_comp.formula 'C21 H23 Cl F N O2' _chem_comp.formula_weight 375.864 _chem_comp.id GMJ _chem_comp.mon_nstd_flag . _chem_comp.name 4-[4-(4-chlorophenyl)-4-hydroxypiperidin-1-yl]-1-(4-fluorophenyl)butan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C21 GMJ sing 129 n n C21 C20 GMJ doub 130 n y C21 C22 GMJ sing 131 n y C20 C19 GMJ sing 132 n y C22 C23 GMJ doub 133 n y C19 C18 GMJ doub 134 n y C23 C18 GMJ sing 135 n y C18 C15 GMJ sing 136 n n C16 C15 GMJ sing 137 n n C16 C17 GMJ sing 138 n n C15 O25 GMJ sing 139 n n C15 C14 GMJ sing 140 n n C14 C13 GMJ sing 141 n n C17 N12 GMJ sing 142 n n C13 N12 GMJ sing 143 n n N12 C11 GMJ sing 144 n n C11 C10 GMJ sing 145 n n C10 C09 GMJ sing 146 n n C09 C07 GMJ sing 147 n n O08 C07 GMJ doub 148 n n C07 C06 GMJ sing 149 n n C06 C05 GMJ doub 150 n y C06 C01 GMJ sing 151 n y C05 C04 GMJ sing 152 n y C01 C02 GMJ doub 153 n y C04 C03 GMJ doub 154 n y C02 C03 GMJ sing 155 n y C03 F26 GMJ sing 156 n n C10 H1 GMJ sing 157 n n C10 H2 GMJ sing 158 n n C11 H3 GMJ sing 159 n n C11 H4 GMJ sing 160 n n C01 H5 GMJ sing 161 n n C02 H6 GMJ sing 162 n n C04 H7 GMJ sing 163 n n C05 H8 GMJ sing 164 n n C09 H9 GMJ sing 165 n n C09 H10 GMJ sing 166 n n C13 H11 GMJ sing 167 n n C13 H12 GMJ sing 168 n n C14 H13 GMJ sing 169 n n C14 H14 GMJ sing 170 n n C16 H15 GMJ sing 171 n n C16 H16 GMJ sing 172 n n C17 H17 GMJ sing 173 n n C17 H18 GMJ sing 174 n n C19 H19 GMJ sing 175 n n C20 H20 GMJ sing 176 n n C22 H21 GMJ sing 177 n n C23 H22 GMJ sing 178 n n O25 H24 GMJ sing 179 n n # _atom_sites.entry_id 6DJZ _atom_sites.fract_transf_matrix[1][1] 0.011688 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007933 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009116 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GMJ A 1 301 230 GMJ HAL . E 3 SO4 A 1 302 1 SO4 SO4 . F 3 SO4 A 1 303 2 SO4 SO4 . G 3 SO4 A 1 304 6 SO4 SO4 . H 3 SO4 A 1 305 9 SO4 SO4 . I 3 SO4 A 1 306 11 SO4 SO4 . J 3 SO4 A 1 307 12 SO4 SO4 . K 3 SO4 A 1 308 14 SO4 SO4 . L 4 GOL A 1 309 18 GOL GOL . M 4 GOL A 1 310 19 GOL GOL . N 5 OLC A 1 311 25 OLC OLC . O 5 OLC A 1 312 26 OLC OLC . P 5 OLC A 1 313 27 OLC OLC . Q 2 GMJ B 1 301 230 GMJ HAL . R 3 SO4 B 1 302 3 SO4 SO4 . S 3 SO4 B 1 303 4 SO4 SO4 . T 3 SO4 B 1 304 7 SO4 SO4 . U 3 SO4 B 1 305 8 SO4 SO4 . V 4 GOL B 1 306 16 GOL GOL . W 2 GMJ C 1 301 230 GMJ HAL . X 3 SO4 C 1 302 5 SO4 SO4 . Y 3 SO4 C 1 303 10 SO4 SO4 . Z 3 SO4 C 1 304 13 SO4 SO4 . AA 3 SO4 C 1 305 15 SO4 SO4 . BA 4 GOL C 1 306 17 GOL GOL . CA 4 GOL C 1 307 20 GOL GOL . DA 5 OLC C 1 308 21 OLC OLC . EA 5 OLC C 1 309 22 OLC OLC . FA 5 OLC C 1 310 23 OLC OLC . GA 5 OLC C 1 311 24 OLC OLC . HA 6 HOH A 1 401 24 HOH HOH . HA 6 HOH A 2 402 30 HOH HOH . HA 6 HOH A 3 403 2 HOH HOH . HA 6 HOH A 4 404 5 HOH HOH . HA 6 HOH A 5 405 9 HOH HOH . HA 6 HOH A 6 406 23 HOH HOH . HA 6 HOH A 7 407 18 HOH HOH . HA 6 HOH A 8 408 22 HOH HOH . HA 6 HOH A 9 409 6 HOH HOH . IA 6 HOH B 1 401 26 HOH HOH . IA 6 HOH B 2 402 29 HOH HOH . IA 6 HOH B 3 403 27 HOH HOH . IA 6 HOH B 4 404 7 HOH HOH . IA 6 HOH B 5 405 1 HOH HOH . IA 6 HOH B 6 406 28 HOH HOH . IA 6 HOH B 7 407 12 HOH HOH . JA 6 HOH C 1 401 14 HOH HOH . JA 6 HOH C 2 402 4 HOH HOH . JA 6 HOH C 3 403 21 HOH HOH . JA 6 HOH C 4 404 15 HOH HOH . JA 6 HOH C 5 405 19 HOH HOH . JA 6 HOH C 6 406 8 HOH HOH . JA 6 HOH C 7 407 3 HOH HOH . JA 6 HOH C 8 408 20 HOH HOH . JA 6 HOH C 9 409 17 HOH HOH . JA 6 HOH C 10 410 10 HOH HOH . JA 6 HOH C 11 411 13 HOH HOH . JA 6 HOH C 12 412 25 HOH HOH . JA 6 HOH C 13 413 16 HOH HOH . JA 6 HOH C 14 414 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 GMJ . . . Q 2 -9.358 20.936 -24.897 1 100.74 ? C10 GMJ 301 B 1 HETATM 2 C C11 GMJ . . . Q 2 -8.759 21.601 -26.133 1 96.41 ? C11 GMJ 301 B 1 HETATM 3 C C01 GMJ . . . Q 2 -12.274 21.582 -22.24 1 110.92 ? C01 GMJ 301 B 1 HETATM 4 C C02 GMJ . . . Q 2 -13.087 21.382 -21.138 1 123.46 ? C02 GMJ 301 B 1 HETATM 5 C C03 GMJ . . . Q 2 -12.848 22.089 -19.973 1 130.16 ? C03 GMJ 301 B 1 HETATM 6 C C04 GMJ . . . Q 2 -11.799 22.99 -19.913 1 116.05 ? C04 GMJ 301 B 1 HETATM 7 C C05 GMJ . . . Q 2 -10.989 23.189 -21.018 1 120.23 ? C05 GMJ 301 B 1 HETATM 8 C C06 GMJ . . . Q 2 -11.231 22.485 -22.186 1 119.81 ? C06 GMJ 301 B 1 HETATM 9 C C07 GMJ . . . Q 2 -10.35 22.672 -23.42 1 128.32 ? C07 GMJ 301 B 1 HETATM 10 C C09 GMJ . . . Q 2 -9.16 21.745 -23.626 1 113.61 ? C09 GMJ 301 B 1 HETATM 11 C C13 GMJ . . . Q 2 -7.503 19.903 -26.505 1 97.88 ? C13 GMJ 301 B 1 HETATM 12 C C14 GMJ . . . Q 2 -6.107 20.427 -26.813 1 96.3 ? C14 GMJ 301 B 1 HETATM 13 C C15 GMJ . . . Q 2 -5.902 20.742 -28.233 1 109.99 ? C15 GMJ 301 B 1 HETATM 14 C C16 GMJ . . . Q 2 -7.121 20.757 -29.005 1 116.6 ? C16 GMJ 301 B 1 HETATM 15 C C17 GMJ . . . Q 2 -8.265 21.432 -28.245 1 106 ? C17 GMJ 301 B 1 HETATM 16 C C18 GMJ . . . Q 2 -4.923 19.6 -28.844 1 116.99 ? C18 GMJ 301 B 1 HETATM 17 C C19 GMJ . . . Q 2 -5.044 18.293 -28.403 1 124.81 ? C19 GMJ 301 B 1 HETATM 18 C C20 GMJ . . . Q 2 -4.214 17.312 -28.915 1 138.36 ? C20 GMJ 301 B 1 HETATM 19 C C21 GMJ . . . Q 2 -3.263 17.642 -29.866 1 139.64 ? C21 GMJ 301 B 1 HETATM 20 C C22 GMJ . . . Q 2 -3.143 18.949 -30.302 1 127.27 ? C22 GMJ 301 B 1 HETATM 21 C C23 GMJ . . . Q 2 -3.975 19.933 -29.794 1 117.22 ? C23 GMJ 301 B 1 HETATM 22 F F26 GMJ . . . Q 2 -13.646 21.894 -18.883 1 136.35 ? F26 GMJ 301 B 1 HETATM 23 N N12 GMJ . . . Q 2 -8.554 20.776 -26.973 1 101.68 ? N12 GMJ 301 B 1 HETATM 24 O O08 GMJ . . . Q 2 -10.578 23.511 -24.225 1 125.65 ? O08 GMJ 301 B 1 HETATM 25 O O25 GMJ . . . Q 2 -5.275 21.991 -28.337 1 112.74 ? O25 GMJ 301 B 1 HETATM 26 CL CL1 GMJ . . . Q 2 -2.188 16.384 -30.531 1 143.99 ? CL1 GMJ 301 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #