data_6DJZ
#
_model_server_result.job_id            u6YfsmqcD9VxbBIJbdkygA 
_model_server_result.datetime_utc      '2024-11-02 16:19:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6djz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":309}' 
#
_entry.id    6DJZ 
#
_exptl.entry_id    6DJZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DJZ 
_cell.length_a            85.556 
_cell.length_b            126.062 
_cell.length_c            109.702 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DJZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 L N N 
? 4 M N N 
? 4 V N N 
? 4 BA N N 
? 4 CA N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 180 n n 
C1 C2 GOL sing 181 n n 
C1 H11 GOL sing 182 n n 
C1 H12 GOL sing 183 n n 
O1 HO1 GOL sing 184 n n 
C2 O2 GOL sing 185 n n 
C2 C3 GOL sing 186 n n 
C2 H2 GOL sing 187 n n 
O2 HO2 GOL sing 188 n n 
C3 O3 GOL sing 189 n n 
C3 H31 GOL sing 190 n n 
C3 H32 GOL sing 191 n n 
O3 HO3 GOL sing 192 n n 
#
_atom_sites.entry_id                     6DJZ 
_atom_sites.fract_transf_matrix[1][1]    0.011688 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007933 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009116 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 GMJ A 1 301 230 GMJ HAL . 
E 3 SO4 A 1 302 1 SO4 SO4 . 
F 3 SO4 A 1 303 2 SO4 SO4 . 
G 3 SO4 A 1 304 6 SO4 SO4 . 
H 3 SO4 A 1 305 9 SO4 SO4 . 
I 3 SO4 A 1 306 11 SO4 SO4 . 
J 3 SO4 A 1 307 12 SO4 SO4 . 
K 3 SO4 A 1 308 14 SO4 SO4 . 
L 4 GOL A 1 309 18 GOL GOL . 
M 4 GOL A 1 310 19 GOL GOL . 
N 5 OLC A 1 311 25 OLC OLC . 
O 5 OLC A 1 312 26 OLC OLC . 
P 5 OLC A 1 313 27 OLC OLC . 
Q 2 GMJ B 1 301 230 GMJ HAL . 
R 3 SO4 B 1 302 3 SO4 SO4 . 
S 3 SO4 B 1 303 4 SO4 SO4 . 
T 3 SO4 B 1 304 7 SO4 SO4 . 
U 3 SO4 B 1 305 8 SO4 SO4 . 
V 4 GOL B 1 306 16 GOL GOL . 
W 2 GMJ C 1 301 230 GMJ HAL . 
X 3 SO4 C 1 302 5 SO4 SO4 . 
Y 3 SO4 C 1 303 10 SO4 SO4 . 
Z 3 SO4 C 1 304 13 SO4 SO4 . 
AA 3 SO4 C 1 305 15 SO4 SO4 . 
BA 4 GOL C 1 306 17 GOL GOL . 
CA 4 GOL C 1 307 20 GOL GOL . 
DA 5 OLC C 1 308 21 OLC OLC . 
EA 5 OLC C 1 309 22 OLC OLC . 
FA 5 OLC C 1 310 23 OLC OLC . 
GA 5 OLC C 1 311 24 OLC OLC . 
HA 6 HOH A 1 401 24 HOH HOH . 
HA 6 HOH A 2 402 30 HOH HOH . 
HA 6 HOH A 3 403 2 HOH HOH . 
HA 6 HOH A 4 404 5 HOH HOH . 
HA 6 HOH A 5 405 9 HOH HOH . 
HA 6 HOH A 6 406 23 HOH HOH . 
HA 6 HOH A 7 407 18 HOH HOH . 
HA 6 HOH A 8 408 22 HOH HOH . 
HA 6 HOH A 9 409 6 HOH HOH . 
IA 6 HOH B 1 401 26 HOH HOH . 
IA 6 HOH B 2 402 29 HOH HOH . 
IA 6 HOH B 3 403 27 HOH HOH . 
IA 6 HOH B 4 404 7 HOH HOH . 
IA 6 HOH B 5 405 1 HOH HOH . 
IA 6 HOH B 6 406 28 HOH HOH . 
IA 6 HOH B 7 407 12 HOH HOH . 
JA 6 HOH C 1 401 14 HOH HOH . 
JA 6 HOH C 2 402 4 HOH HOH . 
JA 6 HOH C 3 403 21 HOH HOH . 
JA 6 HOH C 4 404 15 HOH HOH . 
JA 6 HOH C 5 405 19 HOH HOH . 
JA 6 HOH C 6 406 8 HOH HOH . 
JA 6 HOH C 7 407 3 HOH HOH . 
JA 6 HOH C 8 408 20 HOH HOH . 
JA 6 HOH C 9 409 17 HOH HOH . 
JA 6 HOH C 10 410 10 HOH HOH . 
JA 6 HOH C 11 411 13 HOH HOH . 
JA 6 HOH C 12 412 25 HOH HOH . 
JA 6 HOH C 13 413 16 HOH HOH . 
JA 6 HOH C 14 414 11 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . L 4 18.771 21.195 -34.626 1 119.97 ? C1 GOL 309 A 1 
HETATM 2 O O1 GOL . . . L 4 19.412 21.548 -33.429 1 102.83 ? O1 GOL 309 A 1 
HETATM 3 C C2 GOL . . . L 4 19.267 22.111 -35.747 1 118.61 ? C2 GOL 309 A 1 
HETATM 4 O O2 GOL . . . L 4 18.824 23.414 -35.48 1 99.98 ? O2 GOL 309 A 1 
HETATM 5 C C3 GOL . . . L 4 18.744 21.71 -37.127 1 111.33 ? C3 GOL 309 A 1 
HETATM 6 O O3 GOL . . . L 4 19.158 22.675 -38.057 1 91.45 ? O3 GOL 309 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#