data_6DJZ # _model_server_result.job_id CPULtEBzlncUfFrjJzuNxA _model_server_result.datetime_utc '2024-11-02 16:21:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6djz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":311}' # _entry.id 6DJZ # _exptl.entry_id 6DJZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DJZ _cell.length_a 85.556 _cell.length_b 126.062 _cell.length_c 109.702 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DJZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 N N N ? 5 O N N ? 5 P N N ? 5 DA N N ? 5 EA N N ? 5 FA N N ? 5 GA N N # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 301 n n C10 C9 OLC doub 302 n n C10 C11 OLC sing 303 n n C9 C8 OLC sing 304 n n C17 C16 OLC sing 305 z n C11 C12 OLC sing 306 n n C8 C7 OLC sing 307 n n C24 C22 OLC sing 308 n n C24 O25 OLC sing 309 n n C16 C15 OLC sing 310 n n C12 C13 OLC sing 311 n n C7 C6 OLC sing 312 n n C15 C14 OLC sing 313 n n C13 C14 OLC sing 314 n n C6 C5 OLC sing 315 n n C5 C4 OLC sing 316 n n C4 C3 OLC sing 317 n n C3 C2 OLC sing 318 n n C2 C1 OLC sing 319 n n C21 C22 OLC sing 320 n n C21 O20 OLC sing 321 n n C1 O19 OLC doub 322 n n C1 O20 OLC sing 323 n n C22 O23 OLC sing 324 n n C18 H18 OLC sing 325 n n C18 H18A OLC sing 326 n n C18 H18B OLC sing 327 n n C10 H10 OLC sing 328 n n C9 H9 OLC sing 329 n n C17 H17 OLC sing 330 n n C17 H17A OLC sing 331 n n C11 H11 OLC sing 332 n n C11 H11A OLC sing 333 n n C8 H8 OLC sing 334 n n C8 H8A OLC sing 335 n n C24 H24 OLC sing 336 n n C24 H24A OLC sing 337 n n C16 H16 OLC sing 338 n n C16 H16A OLC sing 339 n n C12 H12 OLC sing 340 n n C12 H12A OLC sing 341 n n C7 H7 OLC sing 342 n n C7 H7A OLC sing 343 n n C15 H15 OLC sing 344 n n C15 H15A OLC sing 345 n n C13 H13 OLC sing 346 n n C13 H13A OLC sing 347 n n C6 H6 OLC sing 348 n n C6 H6A OLC sing 349 n n C14 H14 OLC sing 350 n n C14 H14A OLC sing 351 n n C5 H5 OLC sing 352 n n C5 H5A OLC sing 353 n n C4 H4 OLC sing 354 n n C4 H4A OLC sing 355 n n C3 H3 OLC sing 356 n n C3 H3A OLC sing 357 n n C2 H2 OLC sing 358 n n C2 H2A OLC sing 359 n n C21 H21 OLC sing 360 n n C21 H21A OLC sing 361 n n C22 H22 OLC sing 362 n n O25 HO25 OLC sing 363 n n O23 HO23 OLC sing 364 n n # _atom_sites.entry_id 6DJZ _atom_sites.fract_transf_matrix[1][1] 0.011688 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007933 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009116 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GMJ A 1 301 230 GMJ HAL . E 3 SO4 A 1 302 1 SO4 SO4 . F 3 SO4 A 1 303 2 SO4 SO4 . G 3 SO4 A 1 304 6 SO4 SO4 . H 3 SO4 A 1 305 9 SO4 SO4 . I 3 SO4 A 1 306 11 SO4 SO4 . J 3 SO4 A 1 307 12 SO4 SO4 . K 3 SO4 A 1 308 14 SO4 SO4 . L 4 GOL A 1 309 18 GOL GOL . M 4 GOL A 1 310 19 GOL GOL . N 5 OLC A 1 311 25 OLC OLC . O 5 OLC A 1 312 26 OLC OLC . P 5 OLC A 1 313 27 OLC OLC . Q 2 GMJ B 1 301 230 GMJ HAL . R 3 SO4 B 1 302 3 SO4 SO4 . S 3 SO4 B 1 303 4 SO4 SO4 . T 3 SO4 B 1 304 7 SO4 SO4 . U 3 SO4 B 1 305 8 SO4 SO4 . V 4 GOL B 1 306 16 GOL GOL . W 2 GMJ C 1 301 230 GMJ HAL . X 3 SO4 C 1 302 5 SO4 SO4 . Y 3 SO4 C 1 303 10 SO4 SO4 . Z 3 SO4 C 1 304 13 SO4 SO4 . AA 3 SO4 C 1 305 15 SO4 SO4 . BA 4 GOL C 1 306 17 GOL GOL . CA 4 GOL C 1 307 20 GOL GOL . DA 5 OLC C 1 308 21 OLC OLC . EA 5 OLC C 1 309 22 OLC OLC . FA 5 OLC C 1 310 23 OLC OLC . GA 5 OLC C 1 311 24 OLC OLC . HA 6 HOH A 1 401 24 HOH HOH . HA 6 HOH A 2 402 30 HOH HOH . HA 6 HOH A 3 403 2 HOH HOH . HA 6 HOH A 4 404 5 HOH HOH . HA 6 HOH A 5 405 9 HOH HOH . HA 6 HOH A 6 406 23 HOH HOH . HA 6 HOH A 7 407 18 HOH HOH . HA 6 HOH A 8 408 22 HOH HOH . HA 6 HOH A 9 409 6 HOH HOH . IA 6 HOH B 1 401 26 HOH HOH . IA 6 HOH B 2 402 29 HOH HOH . IA 6 HOH B 3 403 27 HOH HOH . IA 6 HOH B 4 404 7 HOH HOH . IA 6 HOH B 5 405 1 HOH HOH . IA 6 HOH B 6 406 28 HOH HOH . IA 6 HOH B 7 407 12 HOH HOH . JA 6 HOH C 1 401 14 HOH HOH . JA 6 HOH C 2 402 4 HOH HOH . JA 6 HOH C 3 403 21 HOH HOH . JA 6 HOH C 4 404 15 HOH HOH . JA 6 HOH C 5 405 19 HOH HOH . JA 6 HOH C 6 406 8 HOH HOH . JA 6 HOH C 7 407 3 HOH HOH . JA 6 HOH C 8 408 20 HOH HOH . JA 6 HOH C 9 409 17 HOH HOH . JA 6 HOH C 10 410 10 HOH HOH . JA 6 HOH C 11 411 13 HOH HOH . JA 6 HOH C 12 412 25 HOH HOH . JA 6 HOH C 13 413 16 HOH HOH . JA 6 HOH C 14 414 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 OLC . . . N 5 29.293 44.012 -29.046 1 137.54 ? C24 OLC 311 A 1 HETATM 2 C C21 OLC . . . N 5 27.749 43.402 -27.141 1 135.58 ? C21 OLC 311 A 1 HETATM 3 C C1 OLC . . . N 5 26.355 42.436 -25.462 1 104.91 ? C1 OLC 311 A 1 HETATM 4 C C22 OLC . . . N 5 29.083 43.105 -27.833 1 143.02 ? C22 OLC 311 A 1 HETATM 5 O O19 OLC . . . N 5 26.647 43.056 -24.5 1 106.63 ? O19 OLC 311 A 1 HETATM 6 O O25 OLC . . . N 5 28.384 43.71 -30.058 1 129.49 ? O25 OLC 311 A 1 HETATM 7 O O23 OLC . . . N 5 30.12 43.307 -26.914 1 117.2 ? O23 OLC 311 A 1 HETATM 8 O O20 OLC . . . N 5 27.309 42.25 -26.469 1 121.63 ? O20 OLC 311 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #