data_6DK0
#
_model_server_result.job_id            koWD8PPtbRquaxcTXEsNjQ 
_model_server_result.datetime_utc      '2024-10-18 16:24:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dk0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":308}' 
#
_entry.id    6DK0 
#
_exptl.entry_id    6DK0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DK0 
_cell.length_a            85.556 
_cell.length_b            126.062 
_cell.length_c            109.702 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DK0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 K N N 
? 4 U N N 
? 4 Z N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 189 n n 
C1 C2 GOL sing 190 n n 
C1 H11 GOL sing 191 n n 
C1 H12 GOL sing 192 n n 
O1 HO1 GOL sing 193 n n 
C2 O2 GOL sing 194 n n 
C2 C3 GOL sing 195 n n 
C2 H2 GOL sing 196 n n 
O2 HO2 GOL sing 197 n n 
C3 O3 GOL sing 198 n n 
C3 H31 GOL sing 199 n n 
C3 H32 GOL sing 200 n n 
O3 HO3 GOL sing 201 n n 
#
_atom_sites.entry_id                     6DK0 
_atom_sites.fract_transf_matrix[1][1]    0.011688 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007933 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009116 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 GKY A 1 301 230 GKY NEO . 
E 3 SO4 A 1 302 1 SO4 SO4 . 
F 3 SO4 A 1 303 2 SO4 SO4 . 
G 3 SO4 A 1 304 6 SO4 SO4 . 
H 3 SO4 A 1 305 9 SO4 SO4 . 
I 3 SO4 A 1 306 12 SO4 SO4 . 
J 3 SO4 A 1 307 14 SO4 SO4 . 
K 4 GOL A 1 308 17 GOL GOL . 
L 5 OLC A 1 309 22 OLC OLC . 
M 5 OLC A 1 310 23 OLC OLC . 
N 5 OLC A 1 311 25 OLC OLC . 
O 2 GKY B 1 301 230 GKY NEO . 
P 3 SO4 B 1 302 3 SO4 SO4 . 
Q 3 SO4 B 1 303 4 SO4 SO4 . 
R 3 SO4 B 1 304 7 SO4 SO4 . 
S 3 SO4 B 1 305 8 SO4 SO4 . 
T 3 SO4 B 1 306 11 SO4 SO4 . 
U 4 GOL B 1 307 15 GOL GOL . 
V 2 GKY C 1 301 230 GKY NEO . 
W 3 SO4 C 1 302 5 SO4 SO4 . 
X 3 SO4 C 1 303 10 SO4 SO4 . 
Y 3 SO4 C 1 304 13 SO4 SO4 . 
Z 4 GOL C 1 305 16 GOL GOL . 
AA 5 OLC C 1 306 18 OLC OLC . 
BA 5 OLC C 1 307 19 OLC OLC . 
CA 5 OLC C 1 308 20 OLC OLC . 
DA 5 OLC C 1 309 21 OLC OLC . 
EA 5 OLC C 1 310 24 OLC OLC . 
FA 6 HOH A 1 401 8 HOH HOH . 
FA 6 HOH A 2 402 16 HOH HOH . 
FA 6 HOH A 3 403 95 HOH HOH . 
FA 6 HOH A 4 404 87 HOH HOH . 
FA 6 HOH A 5 405 12 HOH HOH . 
FA 6 HOH A 6 406 25 HOH HOH . 
FA 6 HOH A 7 407 46 HOH HOH . 
FA 6 HOH A 8 408 22 HOH HOH . 
FA 6 HOH A 9 409 88 HOH HOH . 
FA 6 HOH A 10 410 85 HOH HOH . 
FA 6 HOH A 11 411 71 HOH HOH . 
FA 6 HOH A 12 412 14 HOH HOH . 
FA 6 HOH A 13 413 30 HOH HOH . 
FA 6 HOH A 14 414 10 HOH HOH . 
FA 6 HOH A 15 415 37 HOH HOH . 
FA 6 HOH A 16 416 59 HOH HOH . 
FA 6 HOH A 17 417 20 HOH HOH . 
FA 6 HOH A 18 418 64 HOH HOH . 
FA 6 HOH A 19 419 53 HOH HOH . 
FA 6 HOH A 20 420 49 HOH HOH . 
FA 6 HOH A 21 421 47 HOH HOH . 
FA 6 HOH A 22 422 45 HOH HOH . 
FA 6 HOH A 23 423 91 HOH HOH . 
FA 6 HOH A 24 424 4 HOH HOH . 
FA 6 HOH A 25 425 55 HOH HOH . 
FA 6 HOH A 26 426 86 HOH HOH . 
FA 6 HOH A 27 427 92 HOH HOH . 
FA 6 HOH A 28 428 69 HOH HOH . 
FA 6 HOH A 29 429 82 HOH HOH . 
FA 6 HOH A 30 430 83 HOH HOH . 
FA 6 HOH A 31 431 33 HOH HOH . 
GA 6 HOH B 1 401 29 HOH HOH . 
GA 6 HOH B 2 402 17 HOH HOH . 
GA 6 HOH B 3 403 31 HOH HOH . 
GA 6 HOH B 4 404 73 HOH HOH . 
GA 6 HOH B 5 405 89 HOH HOH . 
GA 6 HOH B 6 406 58 HOH HOH . 
GA 6 HOH B 7 407 41 HOH HOH . 
GA 6 HOH B 8 408 70 HOH HOH . 
GA 6 HOH B 9 409 74 HOH HOH . 
GA 6 HOH B 10 410 61 HOH HOH . 
GA 6 HOH B 11 411 40 HOH HOH . 
GA 6 HOH B 12 412 2 HOH HOH . 
GA 6 HOH B 13 413 93 HOH HOH . 
GA 6 HOH B 14 414 39 HOH HOH . 
GA 6 HOH B 15 415 32 HOH HOH . 
GA 6 HOH B 16 416 90 HOH HOH . 
GA 6 HOH B 17 417 68 HOH HOH . 
GA 6 HOH B 18 418 34 HOH HOH . 
HA 6 HOH C 1 401 18 HOH HOH . 
HA 6 HOH C 2 402 80 HOH HOH . 
HA 6 HOH C 3 403 77 HOH HOH . 
HA 6 HOH C 4 404 3 HOH HOH . 
HA 6 HOH C 5 405 23 HOH HOH . 
HA 6 HOH C 6 406 19 HOH HOH . 
HA 6 HOH C 7 407 1 HOH HOH . 
HA 6 HOH C 8 408 6 HOH HOH . 
HA 6 HOH C 9 409 35 HOH HOH . 
HA 6 HOH C 10 410 36 HOH HOH . 
HA 6 HOH C 11 411 27 HOH HOH . 
HA 6 HOH C 12 412 56 HOH HOH . 
HA 6 HOH C 13 413 76 HOH HOH . 
HA 6 HOH C 14 414 42 HOH HOH . 
HA 6 HOH C 15 415 7 HOH HOH . 
HA 6 HOH C 16 416 51 HOH HOH . 
HA 6 HOH C 17 417 11 HOH HOH . 
HA 6 HOH C 18 418 52 HOH HOH . 
HA 6 HOH C 19 419 43 HOH HOH . 
HA 6 HOH C 20 420 5 HOH HOH . 
HA 6 HOH C 21 421 50 HOH HOH . 
HA 6 HOH C 22 422 24 HOH HOH . 
HA 6 HOH C 23 423 62 HOH HOH . 
HA 6 HOH C 24 424 38 HOH HOH . 
HA 6 HOH C 25 425 28 HOH HOH . 
HA 6 HOH C 26 426 21 HOH HOH . 
HA 6 HOH C 27 427 26 HOH HOH . 
HA 6 HOH C 28 428 72 HOH HOH . 
HA 6 HOH C 29 429 63 HOH HOH . 
HA 6 HOH C 30 430 57 HOH HOH . 
HA 6 HOH C 31 431 48 HOH HOH . 
HA 6 HOH C 32 432 81 HOH HOH . 
HA 6 HOH C 33 433 75 HOH HOH . 
HA 6 HOH C 34 434 54 HOH HOH . 
HA 6 HOH C 35 435 13 HOH HOH . 
HA 6 HOH C 36 436 94 HOH HOH . 
HA 6 HOH C 37 437 9 HOH HOH . 
HA 6 HOH C 38 438 65 HOH HOH . 
HA 6 HOH C 39 439 79 HOH HOH . 
HA 6 HOH C 40 440 78 HOH HOH . 
HA 6 HOH C 41 441 96 HOH HOH . 
HA 6 HOH C 42 442 67 HOH HOH . 
HA 6 HOH C 43 443 60 HOH HOH . 
HA 6 HOH C 44 444 44 HOH HOH . 
HA 6 HOH C 45 445 15 HOH HOH . 
HA 6 HOH C 46 446 84 HOH HOH . 
HA 6 HOH C 47 447 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 4 19.676 22.699 -36.765 1 78.76 ? C1 GOL 308 A 1 
HETATM 2 O O1 GOL . . . K 4 18.78 23.127 -37.753 1 65.17 ? O1 GOL 308 A 1 
HETATM 3 C C2 GOL . . . K 4 19.012 22.878 -35.402 1 83.47 ? C2 GOL 308 A 1 
HETATM 4 O O2 GOL . . . K 4 19 24.247 -35.1 1 68.6 ? O2 GOL 308 A 1 
HETATM 5 C C3 GOL . . . K 4 19.748 22.152 -34.278 1 89.78 ? C3 GOL 308 A 1 
HETATM 6 O O3 GOL . . . K 4 18.963 22.224 -33.12 1 80.15 ? O3 GOL 308 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           348 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#