data_6DK0
#
_model_server_result.job_id            M229hDGiwzuQSSlBcAft8g 
_model_server_result.datetime_utc      '2024-11-25 09:49:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dk0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":311}' 
#
_entry.id    6DK0 
#
_exptl.entry_id    6DK0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DK0 
_cell.length_a            85.556 
_cell.length_b            126.062 
_cell.length_c            109.702 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DK0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 L N N 
? 5 M N N 
? 5 N N N 
? 5 AA N N 
? 5 BA N N 
? 5 CA N N 
? 5 DA N N 
? 5 EA N N 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 310 n n 
C10 C9 OLC doub 311 n n 
C10 C11 OLC sing 312 n n 
C9 C8 OLC sing 313 n n 
C17 C16 OLC sing 314 z n 
C11 C12 OLC sing 315 n n 
C8 C7 OLC sing 316 n n 
C24 C22 OLC sing 317 n n 
C24 O25 OLC sing 318 n n 
C16 C15 OLC sing 319 n n 
C12 C13 OLC sing 320 n n 
C7 C6 OLC sing 321 n n 
C15 C14 OLC sing 322 n n 
C13 C14 OLC sing 323 n n 
C6 C5 OLC sing 324 n n 
C5 C4 OLC sing 325 n n 
C4 C3 OLC sing 326 n n 
C3 C2 OLC sing 327 n n 
C2 C1 OLC sing 328 n n 
C21 C22 OLC sing 329 n n 
C21 O20 OLC sing 330 n n 
C1 O19 OLC doub 331 n n 
C1 O20 OLC sing 332 n n 
C22 O23 OLC sing 333 n n 
C18 H18 OLC sing 334 n n 
C18 H18A OLC sing 335 n n 
C18 H18B OLC sing 336 n n 
C10 H10 OLC sing 337 n n 
C9 H9 OLC sing 338 n n 
C17 H17 OLC sing 339 n n 
C17 H17A OLC sing 340 n n 
C11 H11 OLC sing 341 n n 
C11 H11A OLC sing 342 n n 
C8 H8 OLC sing 343 n n 
C8 H8A OLC sing 344 n n 
C24 H24 OLC sing 345 n n 
C24 H24A OLC sing 346 n n 
C16 H16 OLC sing 347 n n 
C16 H16A OLC sing 348 n n 
C12 H12 OLC sing 349 n n 
C12 H12A OLC sing 350 n n 
C7 H7 OLC sing 351 n n 
C7 H7A OLC sing 352 n n 
C15 H15 OLC sing 353 n n 
C15 H15A OLC sing 354 n n 
C13 H13 OLC sing 355 n n 
C13 H13A OLC sing 356 n n 
C6 H6 OLC sing 357 n n 
C6 H6A OLC sing 358 n n 
C14 H14 OLC sing 359 n n 
C14 H14A OLC sing 360 n n 
C5 H5 OLC sing 361 n n 
C5 H5A OLC sing 362 n n 
C4 H4 OLC sing 363 n n 
C4 H4A OLC sing 364 n n 
C3 H3 OLC sing 365 n n 
C3 H3A OLC sing 366 n n 
C2 H2 OLC sing 367 n n 
C2 H2A OLC sing 368 n n 
C21 H21 OLC sing 369 n n 
C21 H21A OLC sing 370 n n 
C22 H22 OLC sing 371 n n 
O25 HO25 OLC sing 372 n n 
O23 HO23 OLC sing 373 n n 
#
_atom_sites.entry_id                     6DK0 
_atom_sites.fract_transf_matrix[1][1]    0.011688 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007933 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009116 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 GKY A 1 301 230 GKY NEO . 
E 3 SO4 A 1 302 1 SO4 SO4 . 
F 3 SO4 A 1 303 2 SO4 SO4 . 
G 3 SO4 A 1 304 6 SO4 SO4 . 
H 3 SO4 A 1 305 9 SO4 SO4 . 
I 3 SO4 A 1 306 12 SO4 SO4 . 
J 3 SO4 A 1 307 14 SO4 SO4 . 
K 4 GOL A 1 308 17 GOL GOL . 
L 5 OLC A 1 309 22 OLC OLC . 
M 5 OLC A 1 310 23 OLC OLC . 
N 5 OLC A 1 311 25 OLC OLC . 
O 2 GKY B 1 301 230 GKY NEO . 
P 3 SO4 B 1 302 3 SO4 SO4 . 
Q 3 SO4 B 1 303 4 SO4 SO4 . 
R 3 SO4 B 1 304 7 SO4 SO4 . 
S 3 SO4 B 1 305 8 SO4 SO4 . 
T 3 SO4 B 1 306 11 SO4 SO4 . 
U 4 GOL B 1 307 15 GOL GOL . 
V 2 GKY C 1 301 230 GKY NEO . 
W 3 SO4 C 1 302 5 SO4 SO4 . 
X 3 SO4 C 1 303 10 SO4 SO4 . 
Y 3 SO4 C 1 304 13 SO4 SO4 . 
Z 4 GOL C 1 305 16 GOL GOL . 
AA 5 OLC C 1 306 18 OLC OLC . 
BA 5 OLC C 1 307 19 OLC OLC . 
CA 5 OLC C 1 308 20 OLC OLC . 
DA 5 OLC C 1 309 21 OLC OLC . 
EA 5 OLC C 1 310 24 OLC OLC . 
FA 6 HOH A 1 401 8 HOH HOH . 
FA 6 HOH A 2 402 16 HOH HOH . 
FA 6 HOH A 3 403 95 HOH HOH . 
FA 6 HOH A 4 404 87 HOH HOH . 
FA 6 HOH A 5 405 12 HOH HOH . 
FA 6 HOH A 6 406 25 HOH HOH . 
FA 6 HOH A 7 407 46 HOH HOH . 
FA 6 HOH A 8 408 22 HOH HOH . 
FA 6 HOH A 9 409 88 HOH HOH . 
FA 6 HOH A 10 410 85 HOH HOH . 
FA 6 HOH A 11 411 71 HOH HOH . 
FA 6 HOH A 12 412 14 HOH HOH . 
FA 6 HOH A 13 413 30 HOH HOH . 
FA 6 HOH A 14 414 10 HOH HOH . 
FA 6 HOH A 15 415 37 HOH HOH . 
FA 6 HOH A 16 416 59 HOH HOH . 
FA 6 HOH A 17 417 20 HOH HOH . 
FA 6 HOH A 18 418 64 HOH HOH . 
FA 6 HOH A 19 419 53 HOH HOH . 
FA 6 HOH A 20 420 49 HOH HOH . 
FA 6 HOH A 21 421 47 HOH HOH . 
FA 6 HOH A 22 422 45 HOH HOH . 
FA 6 HOH A 23 423 91 HOH HOH . 
FA 6 HOH A 24 424 4 HOH HOH . 
FA 6 HOH A 25 425 55 HOH HOH . 
FA 6 HOH A 26 426 86 HOH HOH . 
FA 6 HOH A 27 427 92 HOH HOH . 
FA 6 HOH A 28 428 69 HOH HOH . 
FA 6 HOH A 29 429 82 HOH HOH . 
FA 6 HOH A 30 430 83 HOH HOH . 
FA 6 HOH A 31 431 33 HOH HOH . 
GA 6 HOH B 1 401 29 HOH HOH . 
GA 6 HOH B 2 402 17 HOH HOH . 
GA 6 HOH B 3 403 31 HOH HOH . 
GA 6 HOH B 4 404 73 HOH HOH . 
GA 6 HOH B 5 405 89 HOH HOH . 
GA 6 HOH B 6 406 58 HOH HOH . 
GA 6 HOH B 7 407 41 HOH HOH . 
GA 6 HOH B 8 408 70 HOH HOH . 
GA 6 HOH B 9 409 74 HOH HOH . 
GA 6 HOH B 10 410 61 HOH HOH . 
GA 6 HOH B 11 411 40 HOH HOH . 
GA 6 HOH B 12 412 2 HOH HOH . 
GA 6 HOH B 13 413 93 HOH HOH . 
GA 6 HOH B 14 414 39 HOH HOH . 
GA 6 HOH B 15 415 32 HOH HOH . 
GA 6 HOH B 16 416 90 HOH HOH . 
GA 6 HOH B 17 417 68 HOH HOH . 
GA 6 HOH B 18 418 34 HOH HOH . 
HA 6 HOH C 1 401 18 HOH HOH . 
HA 6 HOH C 2 402 80 HOH HOH . 
HA 6 HOH C 3 403 77 HOH HOH . 
HA 6 HOH C 4 404 3 HOH HOH . 
HA 6 HOH C 5 405 23 HOH HOH . 
HA 6 HOH C 6 406 19 HOH HOH . 
HA 6 HOH C 7 407 1 HOH HOH . 
HA 6 HOH C 8 408 6 HOH HOH . 
HA 6 HOH C 9 409 35 HOH HOH . 
HA 6 HOH C 10 410 36 HOH HOH . 
HA 6 HOH C 11 411 27 HOH HOH . 
HA 6 HOH C 12 412 56 HOH HOH . 
HA 6 HOH C 13 413 76 HOH HOH . 
HA 6 HOH C 14 414 42 HOH HOH . 
HA 6 HOH C 15 415 7 HOH HOH . 
HA 6 HOH C 16 416 51 HOH HOH . 
HA 6 HOH C 17 417 11 HOH HOH . 
HA 6 HOH C 18 418 52 HOH HOH . 
HA 6 HOH C 19 419 43 HOH HOH . 
HA 6 HOH C 20 420 5 HOH HOH . 
HA 6 HOH C 21 421 50 HOH HOH . 
HA 6 HOH C 22 422 24 HOH HOH . 
HA 6 HOH C 23 423 62 HOH HOH . 
HA 6 HOH C 24 424 38 HOH HOH . 
HA 6 HOH C 25 425 28 HOH HOH . 
HA 6 HOH C 26 426 21 HOH HOH . 
HA 6 HOH C 27 427 26 HOH HOH . 
HA 6 HOH C 28 428 72 HOH HOH . 
HA 6 HOH C 29 429 63 HOH HOH . 
HA 6 HOH C 30 430 57 HOH HOH . 
HA 6 HOH C 31 431 48 HOH HOH . 
HA 6 HOH C 32 432 81 HOH HOH . 
HA 6 HOH C 33 433 75 HOH HOH . 
HA 6 HOH C 34 434 54 HOH HOH . 
HA 6 HOH C 35 435 13 HOH HOH . 
HA 6 HOH C 36 436 94 HOH HOH . 
HA 6 HOH C 37 437 9 HOH HOH . 
HA 6 HOH C 38 438 65 HOH HOH . 
HA 6 HOH C 39 439 79 HOH HOH . 
HA 6 HOH C 40 440 78 HOH HOH . 
HA 6 HOH C 41 441 96 HOH HOH . 
HA 6 HOH C 42 442 67 HOH HOH . 
HA 6 HOH C 43 443 60 HOH HOH . 
HA 6 HOH C 44 444 44 HOH HOH . 
HA 6 HOH C 45 445 15 HOH HOH . 
HA 6 HOH C 46 446 84 HOH HOH . 
HA 6 HOH C 47 447 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C24 OLC . . . N 5 20.528 49.609 -41.138 1 105.56 ? C24 OLC 311 A 1 
HETATM 2 C C21 OLC . . . N 5 18.853 50.28 -39.399 1 71.75 ? C21 OLC 311 A 1 
HETATM 3 C C1 OLC . . . N 5 17.236 51.16 -37.922 1 75.08 ? C1 OLC 311 A 1 
HETATM 4 C C22 OLC . . . N 5 19.818 50.787 -40.473 1 100 ? C22 OLC 311 A 1 
HETATM 5 O O19 OLC . . . N 5 17.551 50.31 -37.16 1 81.18 ? O19 OLC 311 A 1 
HETATM 6 O O25 OLC . . . N 5 21.584 50.098 -41.919 1 110.64 ? O25 OLC 311 A 1 
HETATM 7 O O23 OLC . . . N 5 19.116 51.505 -41.45 1 121.1 ? O23 OLC 311 A 1 
HETATM 8 O O20 OLC . . . N 5 17.845 51.229 -39.181 1 89.46 ? O20 OLC 311 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           8 
#