data_6DK1 # _model_server_result.job_id 3PZ_McfJcjjQIsboZZNxHQ _model_server_result.datetime_utc '2024-11-13 12:25:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dk1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 6DK1 # _exptl.entry_id 6DK1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 285.424 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,6S,11S)-6,11-dimethyl-3-(3-methylbut-2-en-1-yl)-1,2,3,4,5,6-hexahydro-2,6-methano-3-benzazocin-8-ol _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DK1 _cell.length_a 84.837 _cell.length_b 128.59 _cell.length_c 109.18 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DK1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 O N N ? 2 X N N # _chem_comp.formula 'C19 H27 N O' _chem_comp.formula_weight 285.424 _chem_comp.id GM4 _chem_comp.mon_nstd_flag . _chem_comp.name (2S,6S,11S)-6,11-dimethyl-3-(3-methylbut-2-en-1-yl)-1,2,3,4,5,6-hexahydro-2,6-methano-3-benzazocin-8-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C19 GM4 sing 129 n n C19 C20 GM4 sing 130 n n C19 C18 GM4 doub 131 n n C18 C17 GM4 sing 132 n n C17 N16 GM4 sing 133 n n N16 C15 GM4 sing 134 n n N16 C03 GM4 sing 135 n n C15 C14 GM4 sing 136 n n C03 C04 GM4 sing 137 n n C03 C02 GM4 sing 138 n n C04 C05 GM4 sing 139 n n C02 C01 GM4 sing 140 n n C02 C12 GM4 sing 141 n n C14 C12 GM4 sing 142 n n C12 C06 GM4 sing 143 n n C12 C13 GM4 sing 144 n n C05 C06 GM4 doub 145 n y C05 C11 GM4 sing 146 n y C06 C07 GM4 sing 147 n y C11 C10 GM4 doub 148 n y C07 C08 GM4 doub 149 n y C10 C08 GM4 sing 150 n y C08 O09 GM4 sing 151 n n C02 H1 GM4 sing 152 n n C04 H2 GM4 sing 153 n n C04 H3 GM4 sing 154 n n C11 H4 GM4 sing 155 n n C13 H5 GM4 sing 156 n n C13 H6 GM4 sing 157 n n C13 H7 GM4 sing 158 n n C14 H8 GM4 sing 159 n n C14 H9 GM4 sing 160 n n C15 H10 GM4 sing 161 n n C15 H11 GM4 sing 162 n n C01 H12 GM4 sing 163 n n C01 H13 GM4 sing 164 n n C01 H14 GM4 sing 165 n n C03 H15 GM4 sing 166 n n C07 H16 GM4 sing 167 n n C10 H17 GM4 sing 168 n n C17 H18 GM4 sing 169 n n C17 H19 GM4 sing 170 n n C18 H20 GM4 sing 171 n n C20 H21 GM4 sing 172 n n C20 H22 GM4 sing 173 n n C20 H23 GM4 sing 174 n n C21 H24 GM4 sing 175 n n C21 H25 GM4 sing 176 n n C21 H26 GM4 sing 177 n n O09 H28 GM4 sing 178 n n # _atom_sites.entry_id 6DK1 _atom_sites.fract_transf_matrix[1][1] 0.011787 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007777 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009159 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GM4 A 1 301 230 GM4 PTZ . E 3 SO4 A 1 302 1 SO4 SO4 . F 3 SO4 A 1 303 5 SO4 SO4 . G 3 SO4 A 1 304 7 SO4 SO4 . H 3 SO4 A 1 305 9 SO4 SO4 . I 3 SO4 A 1 306 11 SO4 SO4 . J 3 SO4 A 1 307 12 SO4 SO4 . K 3 SO4 A 1 308 14 SO4 SO4 . L 4 GOL A 1 309 16 GOL GOL . M 5 OLC A 1 310 27 OLC OLC . N 5 OLC A 1 311 28 OLC OLC . O 2 GM4 B 1 301 230 GM4 PTZ . P 3 SO4 B 1 302 2 SO4 SO4 . Q 3 SO4 B 1 303 3 SO4 SO4 . R 3 SO4 B 1 304 6 SO4 SO4 . S 3 SO4 B 1 305 13 SO4 SO4 . T 4 GOL B 1 306 18 GOL GOL . U 5 OLC B 1 307 24 OLC OLC . V 5 OLC B 1 308 25 OLC OLC . W 5 OLC B 1 309 26 OLC OLC . X 2 GM4 C 1 301 230 GM4 PTZ . Y 3 SO4 C 1 302 4 SO4 SO4 . Z 3 SO4 C 1 303 8 SO4 SO4 . AA 3 SO4 C 1 304 10 SO4 SO4 . BA 4 GOL C 1 305 15 GOL GOL . CA 4 GOL C 1 306 17 GOL GOL . DA 5 OLC C 1 307 19 OLC OLC . EA 5 OLC C 1 308 20 OLC OLC . FA 5 OLC C 1 309 21 OLC OLC . GA 5 OLC C 1 310 22 OLC OLC . HA 5 OLC C 1 311 23 OLC OLC . IA 5 OLC C 1 312 29 OLC OLC . JA 6 HOH A 1 401 54 HOH HOH . JA 6 HOH A 2 402 75 HOH HOH . JA 6 HOH A 3 403 68 HOH HOH . JA 6 HOH A 4 404 5 HOH HOH . JA 6 HOH A 5 405 67 HOH HOH . JA 6 HOH A 6 406 36 HOH HOH . JA 6 HOH A 7 407 65 HOH HOH . JA 6 HOH A 8 408 44 HOH HOH . JA 6 HOH A 9 409 15 HOH HOH . JA 6 HOH A 10 410 76 HOH HOH . JA 6 HOH A 11 411 48 HOH HOH . JA 6 HOH A 12 412 81 HOH HOH . JA 6 HOH A 13 413 78 HOH HOH . JA 6 HOH A 14 414 83 HOH HOH . JA 6 HOH A 15 415 42 HOH HOH . JA 6 HOH A 16 416 40 HOH HOH . JA 6 HOH A 17 417 61 HOH HOH . JA 6 HOH A 18 418 77 HOH HOH . JA 6 HOH A 19 419 23 HOH HOH . JA 6 HOH A 20 420 24 HOH HOH . JA 6 HOH A 21 421 63 HOH HOH . JA 6 HOH A 22 422 84 HOH HOH . JA 6 HOH A 23 423 73 HOH HOH . JA 6 HOH A 24 424 27 HOH HOH . KA 6 HOH B 1 401 47 HOH HOH . KA 6 HOH B 2 402 25 HOH HOH . KA 6 HOH B 3 403 43 HOH HOH . KA 6 HOH B 4 404 22 HOH HOH . KA 6 HOH B 5 405 52 HOH HOH . KA 6 HOH B 6 406 80 HOH HOH . KA 6 HOH B 7 407 32 HOH HOH . KA 6 HOH B 8 408 55 HOH HOH . KA 6 HOH B 9 409 72 HOH HOH . KA 6 HOH B 10 410 2 HOH HOH . KA 6 HOH B 11 411 71 HOH HOH . KA 6 HOH B 12 412 49 HOH HOH . KA 6 HOH B 13 413 62 HOH HOH . KA 6 HOH B 14 414 69 HOH HOH . KA 6 HOH B 15 415 79 HOH HOH . KA 6 HOH B 16 416 26 HOH HOH . KA 6 HOH B 17 417 8 HOH HOH . KA 6 HOH B 18 418 7 HOH HOH . LA 6 HOH C 1 401 56 HOH HOH . LA 6 HOH C 2 402 14 HOH HOH . LA 6 HOH C 3 403 38 HOH HOH . LA 6 HOH C 4 404 53 HOH HOH . LA 6 HOH C 5 405 1 HOH HOH . LA 6 HOH C 6 406 13 HOH HOH . LA 6 HOH C 7 407 39 HOH HOH . LA 6 HOH C 8 408 33 HOH HOH . LA 6 HOH C 9 409 30 HOH HOH . LA 6 HOH C 10 410 34 HOH HOH . LA 6 HOH C 11 411 45 HOH HOH . LA 6 HOH C 12 412 29 HOH HOH . LA 6 HOH C 13 413 3 HOH HOH . LA 6 HOH C 14 414 19 HOH HOH . LA 6 HOH C 15 415 31 HOH HOH . LA 6 HOH C 16 416 16 HOH HOH . LA 6 HOH C 17 417 4 HOH HOH . LA 6 HOH C 18 418 11 HOH HOH . LA 6 HOH C 19 419 21 HOH HOH . LA 6 HOH C 20 420 6 HOH HOH . LA 6 HOH C 21 421 28 HOH HOH . LA 6 HOH C 22 422 70 HOH HOH . LA 6 HOH C 23 423 9 HOH HOH . LA 6 HOH C 24 424 17 HOH HOH . LA 6 HOH C 25 425 10 HOH HOH . LA 6 HOH C 26 426 60 HOH HOH . LA 6 HOH C 27 427 57 HOH HOH . LA 6 HOH C 28 428 50 HOH HOH . LA 6 HOH C 29 429 85 HOH HOH . LA 6 HOH C 30 430 64 HOH HOH . LA 6 HOH C 31 431 59 HOH HOH . LA 6 HOH C 32 432 82 HOH HOH . LA 6 HOH C 33 433 46 HOH HOH . LA 6 HOH C 34 434 37 HOH HOH . LA 6 HOH C 35 435 51 HOH HOH . LA 6 HOH C 36 436 74 HOH HOH . LA 6 HOH C 37 437 12 HOH HOH . LA 6 HOH C 38 438 35 HOH HOH . LA 6 HOH C 39 439 20 HOH HOH . LA 6 HOH C 40 440 58 HOH HOH . LA 6 HOH C 41 441 66 HOH HOH . LA 6 HOH C 42 442 18 HOH HOH . LA 6 HOH C 43 443 86 HOH HOH . LA 6 HOH C 44 444 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 GM4 . . . D 2 12.327 39.001 -34.59 1 93.07 ? C02 GM4 301 A 1 HETATM 2 C C04 GM4 . . . D 2 9.888 39.854 -34.694 1 87.76 ? C04 GM4 301 A 1 HETATM 3 C C05 GM4 . . . D 2 9.684 39.026 -33.289 1 88.71 ? C05 GM4 301 A 1 HETATM 4 C C06 GM4 . . . D 2 10.697 38.149 -32.831 1 84.91 ? C06 GM4 301 A 1 HETATM 5 C C11 GM4 . . . D 2 8.506 39.189 -32.553 1 97.05 ? C11 GM4 301 A 1 HETATM 6 C C12 GM4 . . . D 2 12.009 37.935 -33.62 1 89.66 ? C12 GM4 301 A 1 HETATM 7 C C13 GM4 . . . D 2 13.164 37.736 -32.636 1 74.56 ? C13 GM4 301 A 1 HETATM 8 C C14 GM4 . . . D 2 11.831 36.705 -34.404 1 88.65 ? C14 GM4 301 A 1 HETATM 9 C C15 GM4 . . . D 2 10.789 36.872 -35.546 1 72.16 ? C15 GM4 301 A 1 HETATM 10 C C01 GM4 . . . D 2 12.719 40.355 -33.806 1 73.82 ? C01 GM4 301 A 1 HETATM 11 C C03 GM4 . . . D 2 11.198 39.274 -35.517 1 95.27 ? C03 GM4 301 A 1 HETATM 12 C C07 GM4 . . . D 2 10.516 37.439 -31.634 1 80.21 ? C07 GM4 301 A 1 HETATM 13 C C08 GM4 . . . D 2 9.343 37.606 -30.9 1 98.78 ? C08 GM4 301 A 1 HETATM 14 C C10 GM4 . . . D 2 8.333 38.478 -31.364 1 105.92 ? C10 GM4 301 A 1 HETATM 15 C C17 GM4 . . . D 2 9.82 38.241 -36.886 1 75 ? C17 GM4 301 A 1 HETATM 16 C C18 GM4 . . . D 2 9.991 39.132 -38.117 1 69.83 ? C18 GM4 301 A 1 HETATM 17 C C19 GM4 . . . D 2 8.934 39.595 -38.761 1 60.88 ? C19 GM4 301 A 1 HETATM 18 C C20 GM4 . . . D 2 7.523 39.245 -38.283 1 59.94 ? C20 GM4 301 A 1 HETATM 19 C C21 GM4 . . . D 2 9.114 40.488 -39.99 1 57.7 ? C21 GM4 301 A 1 HETATM 20 N N16 GM4 . . . D 2 10.853 38.098 -36.293 1 86.71 ? N16 GM4 301 A 1 HETATM 21 O O09 GM4 . . . D 2 9.164 36.891 -29.711 1 101.46 ? O09 GM4 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 21 #