data_6DK1 # _model_server_result.job_id v_UIslZmEsX7qoV22lQe7g _model_server_result.datetime_utc '2024-11-13 12:40:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dk1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CA","auth_seq_id":306}' # _entry.id 6DK1 # _exptl.entry_id 6DK1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DK1 _cell.length_a 84.837 _cell.length_b 128.59 _cell.length_c 109.18 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DK1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 L N N ? 4 T N N ? 4 BA N N ? 4 CA N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 179 n n C1 C2 GOL sing 180 n n C1 H11 GOL sing 181 n n C1 H12 GOL sing 182 n n O1 HO1 GOL sing 183 n n C2 O2 GOL sing 184 n n C2 C3 GOL sing 185 n n C2 H2 GOL sing 186 n n O2 HO2 GOL sing 187 n n C3 O3 GOL sing 188 n n C3 H31 GOL sing 189 n n C3 H32 GOL sing 190 n n O3 HO3 GOL sing 191 n n # _atom_sites.entry_id 6DK1 _atom_sites.fract_transf_matrix[1][1] 0.011787 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007777 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009159 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GM4 A 1 301 230 GM4 PTZ . E 3 SO4 A 1 302 1 SO4 SO4 . F 3 SO4 A 1 303 5 SO4 SO4 . G 3 SO4 A 1 304 7 SO4 SO4 . H 3 SO4 A 1 305 9 SO4 SO4 . I 3 SO4 A 1 306 11 SO4 SO4 . J 3 SO4 A 1 307 12 SO4 SO4 . K 3 SO4 A 1 308 14 SO4 SO4 . L 4 GOL A 1 309 16 GOL GOL . M 5 OLC A 1 310 27 OLC OLC . N 5 OLC A 1 311 28 OLC OLC . O 2 GM4 B 1 301 230 GM4 PTZ . P 3 SO4 B 1 302 2 SO4 SO4 . Q 3 SO4 B 1 303 3 SO4 SO4 . R 3 SO4 B 1 304 6 SO4 SO4 . S 3 SO4 B 1 305 13 SO4 SO4 . T 4 GOL B 1 306 18 GOL GOL . U 5 OLC B 1 307 24 OLC OLC . V 5 OLC B 1 308 25 OLC OLC . W 5 OLC B 1 309 26 OLC OLC . X 2 GM4 C 1 301 230 GM4 PTZ . Y 3 SO4 C 1 302 4 SO4 SO4 . Z 3 SO4 C 1 303 8 SO4 SO4 . AA 3 SO4 C 1 304 10 SO4 SO4 . BA 4 GOL C 1 305 15 GOL GOL . CA 4 GOL C 1 306 17 GOL GOL . DA 5 OLC C 1 307 19 OLC OLC . EA 5 OLC C 1 308 20 OLC OLC . FA 5 OLC C 1 309 21 OLC OLC . GA 5 OLC C 1 310 22 OLC OLC . HA 5 OLC C 1 311 23 OLC OLC . IA 5 OLC C 1 312 29 OLC OLC . JA 6 HOH A 1 401 54 HOH HOH . JA 6 HOH A 2 402 75 HOH HOH . JA 6 HOH A 3 403 68 HOH HOH . JA 6 HOH A 4 404 5 HOH HOH . JA 6 HOH A 5 405 67 HOH HOH . JA 6 HOH A 6 406 36 HOH HOH . JA 6 HOH A 7 407 65 HOH HOH . JA 6 HOH A 8 408 44 HOH HOH . JA 6 HOH A 9 409 15 HOH HOH . JA 6 HOH A 10 410 76 HOH HOH . JA 6 HOH A 11 411 48 HOH HOH . JA 6 HOH A 12 412 81 HOH HOH . JA 6 HOH A 13 413 78 HOH HOH . JA 6 HOH A 14 414 83 HOH HOH . JA 6 HOH A 15 415 42 HOH HOH . JA 6 HOH A 16 416 40 HOH HOH . JA 6 HOH A 17 417 61 HOH HOH . JA 6 HOH A 18 418 77 HOH HOH . JA 6 HOH A 19 419 23 HOH HOH . JA 6 HOH A 20 420 24 HOH HOH . JA 6 HOH A 21 421 63 HOH HOH . JA 6 HOH A 22 422 84 HOH HOH . JA 6 HOH A 23 423 73 HOH HOH . JA 6 HOH A 24 424 27 HOH HOH . KA 6 HOH B 1 401 47 HOH HOH . KA 6 HOH B 2 402 25 HOH HOH . KA 6 HOH B 3 403 43 HOH HOH . KA 6 HOH B 4 404 22 HOH HOH . KA 6 HOH B 5 405 52 HOH HOH . KA 6 HOH B 6 406 80 HOH HOH . KA 6 HOH B 7 407 32 HOH HOH . KA 6 HOH B 8 408 55 HOH HOH . KA 6 HOH B 9 409 72 HOH HOH . KA 6 HOH B 10 410 2 HOH HOH . KA 6 HOH B 11 411 71 HOH HOH . KA 6 HOH B 12 412 49 HOH HOH . KA 6 HOH B 13 413 62 HOH HOH . KA 6 HOH B 14 414 69 HOH HOH . KA 6 HOH B 15 415 79 HOH HOH . KA 6 HOH B 16 416 26 HOH HOH . KA 6 HOH B 17 417 8 HOH HOH . KA 6 HOH B 18 418 7 HOH HOH . LA 6 HOH C 1 401 56 HOH HOH . LA 6 HOH C 2 402 14 HOH HOH . LA 6 HOH C 3 403 38 HOH HOH . LA 6 HOH C 4 404 53 HOH HOH . LA 6 HOH C 5 405 1 HOH HOH . LA 6 HOH C 6 406 13 HOH HOH . LA 6 HOH C 7 407 39 HOH HOH . LA 6 HOH C 8 408 33 HOH HOH . LA 6 HOH C 9 409 30 HOH HOH . LA 6 HOH C 10 410 34 HOH HOH . LA 6 HOH C 11 411 45 HOH HOH . LA 6 HOH C 12 412 29 HOH HOH . LA 6 HOH C 13 413 3 HOH HOH . LA 6 HOH C 14 414 19 HOH HOH . LA 6 HOH C 15 415 31 HOH HOH . LA 6 HOH C 16 416 16 HOH HOH . LA 6 HOH C 17 417 4 HOH HOH . LA 6 HOH C 18 418 11 HOH HOH . LA 6 HOH C 19 419 21 HOH HOH . LA 6 HOH C 20 420 6 HOH HOH . LA 6 HOH C 21 421 28 HOH HOH . LA 6 HOH C 22 422 70 HOH HOH . LA 6 HOH C 23 423 9 HOH HOH . LA 6 HOH C 24 424 17 HOH HOH . LA 6 HOH C 25 425 10 HOH HOH . LA 6 HOH C 26 426 60 HOH HOH . LA 6 HOH C 27 427 57 HOH HOH . LA 6 HOH C 28 428 50 HOH HOH . LA 6 HOH C 29 429 85 HOH HOH . LA 6 HOH C 30 430 64 HOH HOH . LA 6 HOH C 31 431 59 HOH HOH . LA 6 HOH C 32 432 82 HOH HOH . LA 6 HOH C 33 433 46 HOH HOH . LA 6 HOH C 34 434 37 HOH HOH . LA 6 HOH C 35 435 51 HOH HOH . LA 6 HOH C 36 436 74 HOH HOH . LA 6 HOH C 37 437 12 HOH HOH . LA 6 HOH C 38 438 35 HOH HOH . LA 6 HOH C 39 439 20 HOH HOH . LA 6 HOH C 40 440 58 HOH HOH . LA 6 HOH C 41 441 66 HOH HOH . LA 6 HOH C 42 442 18 HOH HOH . LA 6 HOH C 43 443 86 HOH HOH . LA 6 HOH C 44 444 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . CA 4 -9.414 59.85 -53.447 1 102.69 ? C1 GOL 306 C 1 HETATM 2 O O1 GOL . . . CA 4 -10.746 59.415 -53.433 1 104.75 ? O1 GOL 306 C 1 HETATM 3 C C2 GOL . . . CA 4 -8.891 59.843 -52.012 1 97.79 ? C2 GOL 306 C 1 HETATM 4 O O2 GOL . . . CA 4 -9.836 60.484 -51.2 1 91.15 ? O2 GOL 306 C 1 HETATM 5 C C3 GOL . . . CA 4 -7.561 60.581 -51.865 1 85.4 ? C3 GOL 306 C 1 HETATM 6 O O3 GOL . . . CA 4 -7.227 60.629 -50.505 1 75.94 ? O3 GOL 306 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #