data_6DK1 # _model_server_result.job_id JY81VHlOlNTh2hYR4xFUlQ _model_server_result.datetime_utc '2024-11-13 12:25:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dk1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":310}' # _entry.id 6DK1 # _exptl.entry_id 6DK1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DK1 _cell.length_a 84.837 _cell.length_b 128.59 _cell.length_c 109.18 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DK1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 M N N ? 5 N N N ? 5 U N N ? 5 V N N ? 5 W N N ? 5 DA N N ? 5 EA N N ? 5 FA N N ? 5 GA N N ? 5 HA N N ? 5 IA N N # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 300 n n C10 C9 OLC doub 301 n n C10 C11 OLC sing 302 n n C9 C8 OLC sing 303 n n C17 C16 OLC sing 304 z n C11 C12 OLC sing 305 n n C8 C7 OLC sing 306 n n C24 C22 OLC sing 307 n n C24 O25 OLC sing 308 n n C16 C15 OLC sing 309 n n C12 C13 OLC sing 310 n n C7 C6 OLC sing 311 n n C15 C14 OLC sing 312 n n C13 C14 OLC sing 313 n n C6 C5 OLC sing 314 n n C5 C4 OLC sing 315 n n C4 C3 OLC sing 316 n n C3 C2 OLC sing 317 n n C2 C1 OLC sing 318 n n C21 C22 OLC sing 319 n n C21 O20 OLC sing 320 n n C1 O19 OLC doub 321 n n C1 O20 OLC sing 322 n n C22 O23 OLC sing 323 n n C18 H18 OLC sing 324 n n C18 H18A OLC sing 325 n n C18 H18B OLC sing 326 n n C10 H10 OLC sing 327 n n C9 H9 OLC sing 328 n n C17 H17 OLC sing 329 n n C17 H17A OLC sing 330 n n C11 H11 OLC sing 331 n n C11 H11A OLC sing 332 n n C8 H8 OLC sing 333 n n C8 H8A OLC sing 334 n n C24 H24 OLC sing 335 n n C24 H24A OLC sing 336 n n C16 H16 OLC sing 337 n n C16 H16A OLC sing 338 n n C12 H12 OLC sing 339 n n C12 H12A OLC sing 340 n n C7 H7 OLC sing 341 n n C7 H7A OLC sing 342 n n C15 H15 OLC sing 343 n n C15 H15A OLC sing 344 n n C13 H13 OLC sing 345 n n C13 H13A OLC sing 346 n n C6 H6 OLC sing 347 n n C6 H6A OLC sing 348 n n C14 H14 OLC sing 349 n n C14 H14A OLC sing 350 n n C5 H5 OLC sing 351 n n C5 H5A OLC sing 352 n n C4 H4 OLC sing 353 n n C4 H4A OLC sing 354 n n C3 H3 OLC sing 355 n n C3 H3A OLC sing 356 n n C2 H2 OLC sing 357 n n C2 H2A OLC sing 358 n n C21 H21 OLC sing 359 n n C21 H21A OLC sing 360 n n C22 H22 OLC sing 361 n n O25 HO25 OLC sing 362 n n O23 HO23 OLC sing 363 n n # _atom_sites.entry_id 6DK1 _atom_sites.fract_transf_matrix[1][1] 0.011787 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007777 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009159 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GM4 A 1 301 230 GM4 PTZ . E 3 SO4 A 1 302 1 SO4 SO4 . F 3 SO4 A 1 303 5 SO4 SO4 . G 3 SO4 A 1 304 7 SO4 SO4 . H 3 SO4 A 1 305 9 SO4 SO4 . I 3 SO4 A 1 306 11 SO4 SO4 . J 3 SO4 A 1 307 12 SO4 SO4 . K 3 SO4 A 1 308 14 SO4 SO4 . L 4 GOL A 1 309 16 GOL GOL . M 5 OLC A 1 310 27 OLC OLC . N 5 OLC A 1 311 28 OLC OLC . O 2 GM4 B 1 301 230 GM4 PTZ . P 3 SO4 B 1 302 2 SO4 SO4 . Q 3 SO4 B 1 303 3 SO4 SO4 . R 3 SO4 B 1 304 6 SO4 SO4 . S 3 SO4 B 1 305 13 SO4 SO4 . T 4 GOL B 1 306 18 GOL GOL . U 5 OLC B 1 307 24 OLC OLC . V 5 OLC B 1 308 25 OLC OLC . W 5 OLC B 1 309 26 OLC OLC . X 2 GM4 C 1 301 230 GM4 PTZ . Y 3 SO4 C 1 302 4 SO4 SO4 . Z 3 SO4 C 1 303 8 SO4 SO4 . AA 3 SO4 C 1 304 10 SO4 SO4 . BA 4 GOL C 1 305 15 GOL GOL . CA 4 GOL C 1 306 17 GOL GOL . DA 5 OLC C 1 307 19 OLC OLC . EA 5 OLC C 1 308 20 OLC OLC . FA 5 OLC C 1 309 21 OLC OLC . GA 5 OLC C 1 310 22 OLC OLC . HA 5 OLC C 1 311 23 OLC OLC . IA 5 OLC C 1 312 29 OLC OLC . JA 6 HOH A 1 401 54 HOH HOH . JA 6 HOH A 2 402 75 HOH HOH . JA 6 HOH A 3 403 68 HOH HOH . JA 6 HOH A 4 404 5 HOH HOH . JA 6 HOH A 5 405 67 HOH HOH . JA 6 HOH A 6 406 36 HOH HOH . JA 6 HOH A 7 407 65 HOH HOH . JA 6 HOH A 8 408 44 HOH HOH . JA 6 HOH A 9 409 15 HOH HOH . JA 6 HOH A 10 410 76 HOH HOH . JA 6 HOH A 11 411 48 HOH HOH . JA 6 HOH A 12 412 81 HOH HOH . JA 6 HOH A 13 413 78 HOH HOH . JA 6 HOH A 14 414 83 HOH HOH . JA 6 HOH A 15 415 42 HOH HOH . JA 6 HOH A 16 416 40 HOH HOH . JA 6 HOH A 17 417 61 HOH HOH . JA 6 HOH A 18 418 77 HOH HOH . JA 6 HOH A 19 419 23 HOH HOH . JA 6 HOH A 20 420 24 HOH HOH . JA 6 HOH A 21 421 63 HOH HOH . JA 6 HOH A 22 422 84 HOH HOH . JA 6 HOH A 23 423 73 HOH HOH . JA 6 HOH A 24 424 27 HOH HOH . KA 6 HOH B 1 401 47 HOH HOH . KA 6 HOH B 2 402 25 HOH HOH . KA 6 HOH B 3 403 43 HOH HOH . KA 6 HOH B 4 404 22 HOH HOH . KA 6 HOH B 5 405 52 HOH HOH . KA 6 HOH B 6 406 80 HOH HOH . KA 6 HOH B 7 407 32 HOH HOH . KA 6 HOH B 8 408 55 HOH HOH . KA 6 HOH B 9 409 72 HOH HOH . KA 6 HOH B 10 410 2 HOH HOH . KA 6 HOH B 11 411 71 HOH HOH . KA 6 HOH B 12 412 49 HOH HOH . KA 6 HOH B 13 413 62 HOH HOH . KA 6 HOH B 14 414 69 HOH HOH . KA 6 HOH B 15 415 79 HOH HOH . KA 6 HOH B 16 416 26 HOH HOH . KA 6 HOH B 17 417 8 HOH HOH . KA 6 HOH B 18 418 7 HOH HOH . LA 6 HOH C 1 401 56 HOH HOH . LA 6 HOH C 2 402 14 HOH HOH . LA 6 HOH C 3 403 38 HOH HOH . LA 6 HOH C 4 404 53 HOH HOH . LA 6 HOH C 5 405 1 HOH HOH . LA 6 HOH C 6 406 13 HOH HOH . LA 6 HOH C 7 407 39 HOH HOH . LA 6 HOH C 8 408 33 HOH HOH . LA 6 HOH C 9 409 30 HOH HOH . LA 6 HOH C 10 410 34 HOH HOH . LA 6 HOH C 11 411 45 HOH HOH . LA 6 HOH C 12 412 29 HOH HOH . LA 6 HOH C 13 413 3 HOH HOH . LA 6 HOH C 14 414 19 HOH HOH . LA 6 HOH C 15 415 31 HOH HOH . LA 6 HOH C 16 416 16 HOH HOH . LA 6 HOH C 17 417 4 HOH HOH . LA 6 HOH C 18 418 11 HOH HOH . LA 6 HOH C 19 419 21 HOH HOH . LA 6 HOH C 20 420 6 HOH HOH . LA 6 HOH C 21 421 28 HOH HOH . LA 6 HOH C 22 422 70 HOH HOH . LA 6 HOH C 23 423 9 HOH HOH . LA 6 HOH C 24 424 17 HOH HOH . LA 6 HOH C 25 425 10 HOH HOH . LA 6 HOH C 26 426 60 HOH HOH . LA 6 HOH C 27 427 57 HOH HOH . LA 6 HOH C 28 428 50 HOH HOH . LA 6 HOH C 29 429 85 HOH HOH . LA 6 HOH C 30 430 64 HOH HOH . LA 6 HOH C 31 431 59 HOH HOH . LA 6 HOH C 32 432 82 HOH HOH . LA 6 HOH C 33 433 46 HOH HOH . LA 6 HOH C 34 434 37 HOH HOH . LA 6 HOH C 35 435 51 HOH HOH . LA 6 HOH C 36 436 74 HOH HOH . LA 6 HOH C 37 437 12 HOH HOH . LA 6 HOH C 38 438 35 HOH HOH . LA 6 HOH C 39 439 20 HOH HOH . LA 6 HOH C 40 440 58 HOH HOH . LA 6 HOH C 41 441 66 HOH HOH . LA 6 HOH C 42 442 18 HOH HOH . LA 6 HOH C 43 443 86 HOH HOH . LA 6 HOH C 44 444 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 OLC . . . M 5 29.134 43.33 -26.131 1 105.62 ? C24 OLC 310 A 1 HETATM 2 C C2 OLC . . . M 5 24.834 44.156 -21.904 1 92.07 ? C2 OLC 310 A 1 HETATM 3 C C21 OLC . . . M 5 27.104 43.027 -24.702 1 104.79 ? C21 OLC 310 A 1 HETATM 4 C C1 OLC . . . M 5 25.675 43.29 -22.846 1 102.52 ? C1 OLC 310 A 1 HETATM 5 C C22 OLC . . . M 5 27.696 43.791 -25.889 1 110.81 ? C22 OLC 310 A 1 HETATM 6 O O19 OLC . . . M 5 25.917 42.164 -22.561 1 97.07 ? O19 OLC 310 A 1 HETATM 7 O O25 OLC . . . M 5 29.89 44.393 -26.647 1 94.01 ? O25 OLC 310 A 1 HETATM 8 O O23 OLC . . . M 5 26.926 43.537 -27.028 1 86.99 ? O23 OLC 310 A 1 HETATM 9 O O20 OLC . . . M 5 26.157 43.826 -24.048 1 107.19 ? O20 OLC 310 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 9 #