data_6DKB # _model_server_result.job_id FYGzR1Pei9G5Qg5IsfH2qQ _model_server_result.datetime_utc '2024-11-28 10:58:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dkb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":4000}' # _entry.id 6DKB # _exptl.entry_id 6DKB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 521.464 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{[(3R,4S)-3-fluoro-1-{[4-(trifluoromethoxy)phenyl]acetyl}piperidin-4-yl]oxy}-5-(1-methyl-1H-imidazol-4-yl)pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 126.97 _cell.angle_gamma 90 _cell.entry_id 6DKB _cell.length_a 113.49 _cell.length_b 45.97 _cell.length_c 79.27 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DKB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H23 F4 N5 O4' _chem_comp.formula_weight 521.464 _chem_comp.id FKY _chem_comp.mon_nstd_flag . _chem_comp.name 2-{[(3R,4S)-3-fluoro-1-{[4-(trifluoromethoxy)phenyl]acetyl}piperidin-4-yl]oxy}-5-(1-methyl-1H-imidazol-4-yl)pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C16 FKY sing 83 n n C15 F34 FKY sing 84 n n C15 C14 FKY sing 85 n n C16 N17 FKY sing 86 n n C22 C23 FKY sing 87 n n C22 C20 FKY sing 88 n n O13 C14 FKY sing 89 n n O13 C10 FKY sing 90 n n C14 C19 FKY sing 91 n n C23 C28 FKY doub 92 n y C23 C24 FKY sing 93 n y N36 C35 FKY sing 94 n n N17 C20 FKY sing 95 n n N17 C18 FKY sing 96 n n C28 C27 FKY sing 97 n y C24 C25 FKY doub 98 n y C35 O37 FKY doub 99 n n C35 C9 FKY sing 100 n n C10 C9 FKY doub 101 n y C10 N11 FKY sing 102 n y C20 O21 FKY doub 103 n n C27 C26 FKY doub 104 n y C9 C8 FKY sing 105 n y N11 C12 FKY doub 106 n y C25 C26 FKY sing 107 n y C26 O29 FKY sing 108 n n C18 C19 FKY sing 109 n n C8 C7 FKY doub 110 n y C12 C7 FKY sing 111 n y O29 C30 FKY sing 112 n n C7 C1 FKY sing 113 n n C1 N2 FKY sing 114 n y C1 C5 FKY doub 115 n y N2 C3 FKY doub 116 n y C30 F32 FKY sing 117 n n C30 F31 FKY sing 118 n n C30 F33 FKY sing 119 n n C5 N4 FKY sing 120 n y C3 N4 FKY sing 121 n y N4 C6 FKY sing 122 n n C5 H1 FKY sing 123 n n C6 H2 FKY sing 124 n n C6 H3 FKY sing 125 n n C6 H4 FKY sing 126 n n C8 H5 FKY sing 127 n n C15 H6 FKY sing 128 n n C22 H7 FKY sing 129 n n C22 H8 FKY sing 130 n n C24 H9 FKY sing 131 n n C28 H10 FKY sing 132 n n C3 H11 FKY sing 133 n n C12 H12 FKY sing 134 n n C14 H13 FKY sing 135 n n C16 H14 FKY sing 136 n n C16 H15 FKY sing 137 n n C18 H16 FKY sing 138 n n C18 H17 FKY sing 139 n n C19 H18 FKY sing 140 n n C19 H19 FKY sing 141 n n C25 H20 FKY sing 142 n n C27 H21 FKY sing 143 n n N36 H22 FKY sing 144 n n N36 H23 FKY sing 145 n n # _atom_sites.entry_id 6DKB _atom_sites.fract_transf_matrix[1][1] 0.008811 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006633 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01579 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FKY A 1 4000 4000 FKY LIG . C 3 HOH A 1 4101 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 FKY . . . B 2 -20.487 2.71 -28.268 1 63.41 ? C5 FKY 4000 A 1 HETATM 2 C C6 FKY . . . B 2 -19.984 1.46 -30.39 1 72.97 ? C6 FKY 4000 A 1 HETATM 3 C C7 FKY . . . B 2 -20.4 4.527 -26.458 1 62.35 ? C7 FKY 4000 A 1 HETATM 4 C C8 FKY . . . B 2 -19.779 5.707 -26.061 1 63.21 ? C8 FKY 4000 A 1 HETATM 5 C C10 FKY . . . B 2 -21.209 5.747 -24.154 1 63.41 ? C10 FKY 4000 A 1 HETATM 6 C C15 FKY . . . B 2 -22.79 6.766 -21.015 1 61.16 ? C15 FKY 4000 A 1 HETATM 7 C C20 FKY . . . B 2 -21.496 5.536 -17.94 1 67.28 ? C20 FKY 4000 A 1 HETATM 8 C C22 FKY . . . B 2 -22.087 6.557 -16.985 1 65.88 ? C22 FKY 4000 A 1 HETATM 9 C C24 FKY . . . B 2 -20.308 7.407 -15.415 1 68.18 ? C24 FKY 4000 A 1 HETATM 10 C C26 FKY . . . B 2 -19.951 6.431 -13.257 1 69.16 ? C26 FKY 4000 A 1 HETATM 11 C C28 FKY . . . B 2 -21.742 5.659 -14.652 1 65.01 ? C28 FKY 4000 A 1 HETATM 12 C C1 FKY . . . B 2 -19.993 3.853 -27.704 1 62.35 ? C1 FKY 4000 A 1 HETATM 13 N N2 FKY . . . B 2 -18.951 4.414 -28.53 1 64.05 ? N2 FKY 4000 A 1 HETATM 14 C C3 FKY . . . B 2 -18.852 3.6 -29.554 1 65.41 ? C3 FKY 4000 A 1 HETATM 15 N N4 FKY . . . B 2 -19.787 2.546 -29.428 1 68.04 ? N4 FKY 4000 A 1 HETATM 16 C C9 FKY . . . B 2 -20.175 6.368 -24.896 1 65.46 ? C9 FKY 4000 A 1 HETATM 17 N N11 FKY . . . B 2 -21.797 4.609 -24.505 1 62.77 ? N11 FKY 4000 A 1 HETATM 18 C C12 FKY . . . B 2 -21.407 4.024 -25.646 1 63.3 ? C12 FKY 4000 A 1 HETATM 19 O O13 FKY . . . B 2 -21.66 6.43 -23.071 1 61.89 ? O13 FKY 4000 A 1 HETATM 20 C C14 FKY . . . B 2 -22.29 5.716 -21.98 1 61.68 ? C14 FKY 4000 A 1 HETATM 21 C C16 FKY . . . B 2 -23.252 6.106 -19.657 1 61.9 ? C16 FKY 4000 A 1 HETATM 22 N N17 FKY . . . B 2 -22.142 5.325 -19.107 1 65.7 ? N17 FKY 4000 A 1 HETATM 23 C C18 FKY . . . B 2 -21.768 4.221 -20.003 1 64.14 ? C18 FKY 4000 A 1 HETATM 24 C C19 FKY . . . B 2 -21.287 4.756 -21.352 1 63.64 ? C19 FKY 4000 A 1 HETATM 25 O O21 FKY . . . B 2 -20.426 5.003 -17.693 1 67.94 ? O21 FKY 4000 A 1 HETATM 26 C C23 FKY . . . B 2 -21.384 6.559 -15.646 1 65.82 ? C23 FKY 4000 A 1 HETATM 27 C C25 FKY . . . B 2 -19.581 7.339 -14.237 1 69.36 ? C25 FKY 4000 A 1 HETATM 28 C C27 FKY . . . B 2 -21.036 5.592 -13.462 1 66.16 ? C27 FKY 4000 A 1 HETATM 29 O O29 FKY . . . B 2 -19.246 6.471 -12.053 1 73.39 ? O29 FKY 4000 A 1 HETATM 30 C C30 FKY . . . B 2 -18.374 5.501 -11.807 1 78.65 ? C30 FKY 4000 A 1 HETATM 31 F F31 FKY . . . B 2 -17.459 5.382 -12.761 1 81.85 ? F31 FKY 4000 A 1 HETATM 32 F F32 FKY . . . B 2 -17.767 5.805 -10.677 1 80.31 ? F32 FKY 4000 A 1 HETATM 33 F F33 FKY . . . B 2 -18.937 4.32 -11.636 1 76.94 ? F33 FKY 4000 A 1 HETATM 34 F F34 FKY . . . B 2 -21.766 7.693 -20.742 1 61.85 ? F34 FKY 4000 A 1 HETATM 35 C C35 FKY . . . B 2 -19.594 7.699 -24.524 1 68.73 ? C35 FKY 4000 A 1 HETATM 36 N N36 FKY . . . B 2 -19.371 7.952 -23.237 1 68.64 ? N36 FKY 4000 A 1 HETATM 37 O O37 FKY . . . B 2 -19.365 8.523 -25.405 1 70.95 ? O37 FKY 4000 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 37 #