data_6DKG
#
_model_server_result.job_id            yO6uXhXidceIVvcYbpUHcQ 
_model_server_result.datetime_utc      '2024-12-26 23:51:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dkg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":801}' 
#
_entry.id    6DKG 
#
_exptl.entry_id    6DKG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              228.27 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-phenylthieno[2,3-d]pyrimidin-4(3H)-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          125.97 
_cell.angle_gamma         90 
_cell.entry_id            6DKG 
_cell.length_a            112.28 
_cell.length_b            45.49 
_cell.length_c            78.54 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DKG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C12 H8 N2 O S' 
_chem_comp.formula_weight    228.27 
_chem_comp.id                22L 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-phenylthieno[2,3-d]pyrimidin-4(3H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C15 N16 22L doub 1 n n 
C15 N14 22L sing 2 n n 
N16 C10 22L sing 3 n n 
N14 C12 22L sing 4 n n 
C10 C11 22L doub 5 n y 
C10 S9 22L sing 6 n y 
C12 O13 22L doub 7 n n 
C12 C11 22L sing 8 n n 
C11 C7 22L sing 9 n y 
S9 C8 22L sing 10 n y 
C7 C8 22L doub 11 n y 
C7 C4 22L sing 12 n n 
C5 C4 22L doub 13 n y 
C5 C6 22L sing 14 n y 
C4 C3 22L sing 15 n y 
C6 C1 22L doub 16 n y 
C3 C2 22L doub 17 n y 
C1 C2 22L sing 18 n y 
C1 H1 22L sing 19 n n 
C2 H2 22L sing 20 n n 
C3 H3 22L sing 21 n n 
C8 H4 22L sing 22 n n 
C15 H5 22L sing 23 n n 
C5 H6 22L sing 24 n n 
C6 H7 22L sing 25 n n 
N14 H8 22L sing 26 n n 
#
_atom_sites.entry_id                     6DKG 
_atom_sites.fract_transf_matrix[1][1]    0.008906 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006464 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021983 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015732 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 22L A 1 801 1 22L CLL . 
C 3 GO7 A 1 802 1 GO7 UNL . 
D 4 HOH A 1 901 88 HOH HOH . 
D 4 HOH A 2 902 87 HOH HOH . 
D 4 HOH A 3 903 47 HOH HOH . 
D 4 HOH A 4 904 25 HOH HOH . 
D 4 HOH A 5 905 7 HOH HOH . 
D 4 HOH A 6 906 86 HOH HOH . 
D 4 HOH A 7 907 67 HOH HOH . 
D 4 HOH A 8 908 71 HOH HOH . 
D 4 HOH A 9 909 69 HOH HOH . 
D 4 HOH A 10 910 78 HOH HOH . 
D 4 HOH A 11 911 17 HOH HOH . 
D 4 HOH A 12 912 66 HOH HOH . 
D 4 HOH A 13 913 61 HOH HOH . 
D 4 HOH A 14 914 27 HOH HOH . 
D 4 HOH A 15 915 50 HOH HOH . 
D 4 HOH A 16 916 68 HOH HOH . 
D 4 HOH A 17 917 21 HOH HOH . 
D 4 HOH A 18 918 12 HOH HOH . 
D 4 HOH A 19 919 11 HOH HOH . 
D 4 HOH A 20 920 22 HOH HOH . 
D 4 HOH A 21 921 13 HOH HOH . 
D 4 HOH A 22 922 9 HOH HOH . 
D 4 HOH A 23 923 51 HOH HOH . 
D 4 HOH A 24 924 85 HOH HOH . 
D 4 HOH A 25 925 16 HOH HOH . 
D 4 HOH A 26 926 80 HOH HOH . 
D 4 HOH A 27 927 19 HOH HOH . 
D 4 HOH A 28 928 32 HOH HOH . 
D 4 HOH A 29 929 63 HOH HOH . 
D 4 HOH A 30 930 35 HOH HOH . 
D 4 HOH A 31 931 58 HOH HOH . 
D 4 HOH A 32 932 33 HOH HOH . 
D 4 HOH A 33 933 45 HOH HOH . 
D 4 HOH A 34 934 39 HOH HOH . 
D 4 HOH A 35 935 82 HOH HOH . 
D 4 HOH A 36 936 65 HOH HOH . 
D 4 HOH A 37 937 56 HOH HOH . 
D 4 HOH A 38 938 24 HOH HOH . 
D 4 HOH A 39 939 18 HOH HOH . 
D 4 HOH A 40 940 53 HOH HOH . 
D 4 HOH A 41 941 10 HOH HOH . 
D 4 HOH A 42 942 75 HOH HOH . 
D 4 HOH A 43 943 41 HOH HOH . 
D 4 HOH A 44 944 44 HOH HOH . 
D 4 HOH A 45 945 31 HOH HOH . 
D 4 HOH A 46 946 55 HOH HOH . 
D 4 HOH A 47 947 26 HOH HOH . 
D 4 HOH A 48 948 29 HOH HOH . 
D 4 HOH A 49 949 64 HOH HOH . 
D 4 HOH A 50 950 84 HOH HOH . 
D 4 HOH A 51 951 49 HOH HOH . 
D 4 HOH A 52 952 79 HOH HOH . 
D 4 HOH A 53 953 81 HOH HOH . 
D 4 HOH A 54 954 60 HOH HOH . 
D 4 HOH A 55 955 54 HOH HOH . 
D 4 HOH A 56 956 40 HOH HOH . 
D 4 HOH A 57 957 83 HOH HOH . 
D 4 HOH A 58 958 23 HOH HOH . 
D 4 HOH A 59 959 70 HOH HOH . 
D 4 HOH A 60 960 42 HOH HOH . 
D 4 HOH A 61 961 30 HOH HOH . 
D 4 HOH A 62 962 76 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 22L . . . B 2 -30.477 9.062 -34.059 1 46.71 ? C1 22L 801 A 1 
HETATM 2 C C2 22L . . . B 2 -30.18 9.357 -35.375 1 48.26 ? C2 22L 801 A 1 
HETATM 3 C C3 22L . . . B 2 -30.077 8.341 -36.304 1 48.14 ? C3 22L 801 A 1 
HETATM 4 C C7 22L . . . B 2 -30.187 5.958 -36.954 1 43.75 ? C7 22L 801 A 1 
HETATM 5 C C8 22L . . . B 2 -30.781 6.124 -38.161 1 45.41 ? C8 22L 801 A 1 
HETATM 6 C C10 22L . . . B 2 -29.656 3.98 -38.042 1 49.25 ? C10 22L 801 A 1 
HETATM 7 C C11 22L . . . B 2 -29.519 4.721 -36.892 1 47.75 ? C11 22L 801 A 1 
HETATM 8 C C12 22L . . . B 2 -28.756 4.148 -35.812 1 50.89 ? C12 22L 801 A 1 
HETATM 9 C C15 22L . . . B 2 -28.477 2.231 -37.24 1 56.99 ? C15 22L 801 A 1 
HETATM 10 C C4 22L . . . B 2 -30.282 7.021 -35.938 1 43.67 ? C4 22L 801 A 1 
HETATM 11 C C5 22L . . . B 2 -30.589 6.732 -34.61 1 46.39 ? C5 22L 801 A 1 
HETATM 12 C C6 22L . . . B 2 -30.675 7.749 -33.676 1 47.11 ? C6 22L 801 A 1 
HETATM 13 S S9 22L . . . B 2 -30.639 4.802 -39.21 1 49.47 ? S9 22L 801 A 1 
HETATM 14 O O13 22L . . . B 2 -28.393 4.722 -34.79 1 49.41 ? O13 22L 801 A 1 
HETATM 15 N N14 22L . . . B 2 -28.303 2.889 -36.073 1 59.86 1 N14 22L 801 A 1 
HETATM 16 N N16 22L . . . B 2 -29.135 2.689 -38.282 1 43.83 ? N16 22L 801 A 1 
HETATM 17 H H1 22L . . . B 2 -30.55 9.866 -33.332 1 48.09 ? H1 22L 801 A 1 
HETATM 18 H H2 22L . . . B 2 -30.04 10.381 -35.714 1 49.92 ? H2 22L 801 A 1 
HETATM 19 H H3 22L . . . B 2 -29.826 8.545 -37.344 1 50.8 ? H3 22L 801 A 1 
HETATM 20 H H4 22L . . . B 2 -31.289 7.006 -38.538 1 47.9 ? H4 22L 801 A 1 
HETATM 21 H H5 22L . . . B 2 -28.003 1.254 -37.339 1 61.27 ? H5 22L 801 A 1 
HETATM 22 H H6 22L . . . B 2 -30.765 5.704 -34.296 1 48.3 ? H6 22L 801 A 1 
HETATM 23 H H7 22L . . . B 2 -30.87 7.496 -32.636 1 48.94 ? H7 22L 801 A 1 
HETATM 24 H H8 22L . . . B 2 -27.827 2.412 -35.315 1 64.65 ? H8 22L 801 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           24 
#