data_6DKG # _model_server_result.job_id XPqOInqrCIqG8TEfTabHnA _model_server_result.datetime_utc '2024-12-26 23:47:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dkg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 6DKG # _exptl.entry_id 6DKG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 528.493 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{[(3R,4S)-3-fluoro-1-{[4-(trifluoromethoxy)phenyl]acetyl}piperidin-4-yl]oxy}-4-(2-hydroxy-2-methylpropoxy)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.97 _cell.angle_gamma 90 _cell.entry_id 6DKG _cell.length_a 112.28 _cell.length_b 45.49 _cell.length_c 78.54 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DKG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H28 F4 N2 O6' _chem_comp.formula_weight 528.493 _chem_comp.id GO7 _chem_comp.mon_nstd_flag . _chem_comp.name 2-{[(3R,4S)-3-fluoro-1-{[4-(trifluoromethoxy)phenyl]acetyl}piperidin-4-yl]oxy}-4-(2-hydroxy-2-methylpropoxy)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C23 GO7 sing 155 n n C25 C23 GO7 sing 156 n n C22 C23 GO7 sing 157 n n C22 O4 GO7 sing 158 n n C23 C24 GO7 sing 159 n n C5 C4 GO7 doub 160 n y C5 C6 GO7 sing 161 n y C4 C3 GO7 sing 162 n y O4 C6 GO7 sing 163 n n C6 C1 GO7 doub 164 n y O2 C8 GO7 doub 165 n n C3 C8 GO7 sing 166 n n C3 C2 GO7 doub 167 n y C8 N1 GO7 sing 168 n n C1 C2 GO7 sing 169 n y C2 O1 GO7 sing 170 n n O1 C7 GO7 sing 171 n n C7 C12 GO7 sing 172 n n C7 C9 GO7 sing 173 n n C12 C11 GO7 sing 174 n n C9 F4 GO7 sing 175 n n C9 C10 GO7 sing 176 n n C11 N2 GO7 sing 177 n n C10 N2 GO7 sing 178 n n N2 C13 GO7 sing 179 n n C13 O3 GO7 doub 180 n n C13 C14 GO7 sing 181 n n C14 C15 GO7 sing 182 n n C15 C16 GO7 doub 183 n y C15 C20 GO7 sing 184 n y C16 C17 GO7 sing 185 n y C20 C19 GO7 doub 186 n y C17 C18 GO7 doub 187 n y C19 C18 GO7 sing 188 n y C18 O5 GO7 sing 189 n n F1 C21 GO7 sing 190 n n F3 C21 GO7 sing 191 n n O5 C21 GO7 sing 192 n n C21 F2 GO7 sing 193 n n C4 H1 GO7 sing 194 n n C20 H2 GO7 sing 195 n n C16 H3 GO7 sing 196 n n C5 H4 GO7 sing 197 n n C19 H5 GO7 sing 198 n n C17 H6 GO7 sing 199 n n C1 H7 GO7 sing 200 n n C12 H8 GO7 sing 201 n n C12 H9 GO7 sing 202 n n C11 H11 GO7 sing 203 n n C11 H10 GO7 sing 204 n n C10 H13 GO7 sing 205 n n C10 H12 GO7 sing 206 n n C7 H14 GO7 sing 207 n n C9 H15 GO7 sing 208 n n C25 H16 GO7 sing 209 n n C25 H18 GO7 sing 210 n n C25 H17 GO7 sing 211 n n C24 H20 GO7 sing 212 n n C24 H21 GO7 sing 213 n n C24 H19 GO7 sing 214 n n C14 H22 GO7 sing 215 n n C14 H23 GO7 sing 216 n n C22 H25 GO7 sing 217 n n C22 H24 GO7 sing 218 n n N1 H27 GO7 sing 219 n n N1 H26 GO7 sing 220 n n O6 H28 GO7 sing 221 n n # _atom_sites.entry_id 6DKG _atom_sites.fract_transf_matrix[1][1] 0.008906 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006464 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021983 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015732 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 22L A 1 801 1 22L CLL . C 3 GO7 A 1 802 1 GO7 UNL . D 4 HOH A 1 901 88 HOH HOH . D 4 HOH A 2 902 87 HOH HOH . D 4 HOH A 3 903 47 HOH HOH . D 4 HOH A 4 904 25 HOH HOH . D 4 HOH A 5 905 7 HOH HOH . D 4 HOH A 6 906 86 HOH HOH . D 4 HOH A 7 907 67 HOH HOH . D 4 HOH A 8 908 71 HOH HOH . D 4 HOH A 9 909 69 HOH HOH . D 4 HOH A 10 910 78 HOH HOH . D 4 HOH A 11 911 17 HOH HOH . D 4 HOH A 12 912 66 HOH HOH . D 4 HOH A 13 913 61 HOH HOH . D 4 HOH A 14 914 27 HOH HOH . D 4 HOH A 15 915 50 HOH HOH . D 4 HOH A 16 916 68 HOH HOH . D 4 HOH A 17 917 21 HOH HOH . D 4 HOH A 18 918 12 HOH HOH . D 4 HOH A 19 919 11 HOH HOH . D 4 HOH A 20 920 22 HOH HOH . D 4 HOH A 21 921 13 HOH HOH . D 4 HOH A 22 922 9 HOH HOH . D 4 HOH A 23 923 51 HOH HOH . D 4 HOH A 24 924 85 HOH HOH . D 4 HOH A 25 925 16 HOH HOH . D 4 HOH A 26 926 80 HOH HOH . D 4 HOH A 27 927 19 HOH HOH . D 4 HOH A 28 928 32 HOH HOH . D 4 HOH A 29 929 63 HOH HOH . D 4 HOH A 30 930 35 HOH HOH . D 4 HOH A 31 931 58 HOH HOH . D 4 HOH A 32 932 33 HOH HOH . D 4 HOH A 33 933 45 HOH HOH . D 4 HOH A 34 934 39 HOH HOH . D 4 HOH A 35 935 82 HOH HOH . D 4 HOH A 36 936 65 HOH HOH . D 4 HOH A 37 937 56 HOH HOH . D 4 HOH A 38 938 24 HOH HOH . D 4 HOH A 39 939 18 HOH HOH . D 4 HOH A 40 940 53 HOH HOH . D 4 HOH A 41 941 10 HOH HOH . D 4 HOH A 42 942 75 HOH HOH . D 4 HOH A 43 943 41 HOH HOH . D 4 HOH A 44 944 44 HOH HOH . D 4 HOH A 45 945 31 HOH HOH . D 4 HOH A 46 946 55 HOH HOH . D 4 HOH A 47 947 26 HOH HOH . D 4 HOH A 48 948 29 HOH HOH . D 4 HOH A 49 949 64 HOH HOH . D 4 HOH A 50 950 84 HOH HOH . D 4 HOH A 51 951 49 HOH HOH . D 4 HOH A 52 952 79 HOH HOH . D 4 HOH A 53 953 81 HOH HOH . D 4 HOH A 54 954 60 HOH HOH . D 4 HOH A 55 955 54 HOH HOH . D 4 HOH A 56 956 40 HOH HOH . D 4 HOH A 57 957 83 HOH HOH . D 4 HOH A 58 958 23 HOH HOH . D 4 HOH A 59 959 70 HOH HOH . D 4 HOH A 60 960 42 HOH HOH . D 4 HOH A 61 961 30 HOH HOH . D 4 HOH A 62 962 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 GO7 . . . C 3 -19.771 5.218 -25.994 1 54.48 ? C4 GO7 802 A 1 HETATM 2 C C20 GO7 . . . C 3 -21.638 5.943 -14.902 1 50.64 ? C20 GO7 802 A 1 HETATM 3 C C16 GO7 . . . C 3 -20.205 7.695 -15.701 1 55.58 ? C16 GO7 802 A 1 HETATM 4 C C5 GO7 . . . C 3 -20.257 3.981 -26.369 1 54.61 ? C5 GO7 802 A 1 HETATM 5 C C19 GO7 . . . C 3 -20.977 5.955 -13.698 1 51.28 ? C19 GO7 802 A 1 HETATM 6 C C17 GO7 . . . C 3 -19.542 7.722 -14.483 1 54.84 ? C17 GO7 802 A 1 HETATM 7 C C1 GO7 . . . C 3 -21.822 4.077 -24.56 1 49.01 ? C1 GO7 802 A 1 HETATM 8 C C3 GO7 . . . C 3 -20.298 5.898 -24.906 1 51.82 ? C3 GO7 802 A 1 HETATM 9 C C15 GO7 . . . C 3 -21.246 6.803 -15.907 1 53.79 ? C15 GO7 802 A 1 HETATM 10 C C18 GO7 . . . C 3 -19.917 6.829 -13.493 1 54.95 ? C18 GO7 802 A 1 HETATM 11 C C6 GO7 . . . C 3 -21.287 3.409 -25.643 1 53.56 ? C6 GO7 802 A 1 HETATM 12 C C2 GO7 . . . C 3 -21.322 5.315 -24.172 1 49.59 ? C2 GO7 802 A 1 HETATM 13 C C8 GO7 . . . C 3 -19.698 7.234 -24.591 1 51.87 ? C8 GO7 802 A 1 HETATM 14 C C13 GO7 . . . C 3 -21.473 5.547 -18.025 1 57.9 ? C13 GO7 802 A 1 HETATM 15 C C12 GO7 . . . C 3 -21.298 4.62 -21.219 1 51.78 ? C12 GO7 802 A 1 HETATM 16 C C11 GO7 . . . C 3 -21.855 4.06 -19.923 1 53.97 ? C11 GO7 802 A 1 HETATM 17 C C10 GO7 . . . C 3 -23.312 5.985 -19.733 1 52.42 ? C10 GO7 802 A 1 HETATM 18 C C7 GO7 . . . C 3 -22.361 5.399 -21.968 1 47.79 ? C7 GO7 802 A 1 HETATM 19 C C9 GO7 . . . C 3 -22.868 6.508 -21.074 1 47.78 ? C9 GO7 802 A 1 HETATM 20 C C25 GO7 . . . C 3 -22.957 -0.324 -26.938 1 53.98 ? C25 GO7 802 A 1 HETATM 21 C C24 GO7 . . . C 3 -21.348 -0.694 -25.133 1 58.08 ? C24 GO7 802 A 1 HETATM 22 C C14 GO7 . . . C 3 -21.959 6.718 -17.211 1 55.27 ? C14 GO7 802 A 1 HETATM 23 C C22 GO7 . . . C 3 -21.025 1.262 -26.684 1 61.85 ? C22 GO7 802 A 1 HETATM 24 C C23 GO7 . . . C 3 -21.499 -0.188 -26.554 1 60.74 ? C23 GO7 802 A 1 HETATM 25 C C21 GO7 . . . C 3 -18.433 5.699 -12.028 1 60.14 ? C21 GO7 802 A 1 HETATM 26 N N2 GO7 . . . C 3 -22.285 5.162 -19.091 1 55.43 ? N2 GO7 802 A 1 HETATM 27 N N1 GO7 . . . C 3 -19.868 7.782 -23.33 1 51.62 ? N1 GO7 802 A 1 HETATM 28 O O2 GO7 . . . C 3 -19.056 7.803 -25.461 1 51.1 ? O2 GO7 802 A 1 HETATM 29 O O3 GO7 . . . C 3 -20.412 4.996 -17.756 1 61.17 ? O3 GO7 802 A 1 HETATM 30 O O6 GO7 . . . C 3 -20.72 -1.012 -27.431 1 62.96 ? O6 GO7 802 A 1 HETATM 31 O O1 GO7 . . . C 3 -21.843 6.07 -23.115 1 47.19 ? O1 GO7 802 A 1 HETATM 32 O O4 GO7 . . . C 3 -21.867 2.172 -25.934 1 58.99 ? O4 GO7 802 A 1 HETATM 33 O O5 GO7 . . . C 3 -19.271 6.85 -12.257 1 58.84 ? O5 GO7 802 A 1 HETATM 34 F F4 GO7 . . . C 3 -21.866 7.396 -20.846 1 46.28 ? F4 GO7 802 A 1 HETATM 35 F F3 GO7 . . . C 3 -18.948 4.491 -12.347 1 62 ? F3 GO7 802 A 1 HETATM 36 F F2 GO7 . . . C 3 -18.206 5.57 -10.707 1 57.8 ? F2 GO7 802 A 1 HETATM 37 F F1 GO7 . . . C 3 -17.245 5.821 -12.666 1 62.52 ? F1 GO7 802 A 1 HETATM 38 H H1 GO7 . . . C 3 -18.957 5.644 -26.569 1 54.62 ? H1 GO7 802 A 1 HETATM 39 H H2 GO7 . . . C 3 -22.457 5.252 -15.064 1 50.76 ? H2 GO7 802 A 1 HETATM 40 H H3 GO7 . . . C 3 -19.901 8.358 -16.504 1 55.75 ? H3 GO7 802 A 1 HETATM 41 H H4 GO7 . . . C 3 -19.817 3.481 -27.228 1 55.28 ? H4 GO7 802 A 1 HETATM 42 H H5 GO7 . . . C 3 -21.299 5.283 -12.912 1 51.14 ? H5 GO7 802 A 1 HETATM 43 H H6 GO7 . . . C 3 -18.718 8.409 -14.326 1 54.34 ? H6 GO7 802 A 1 HETATM 44 H H7 GO7 . . . C 3 -22.631 3.604 -24.027 1 48.69 ? H7 GO7 802 A 1 HETATM 45 H H8 GO7 . . . C 3 -20.439 5.257 -21.016 1 50.72 ? H8 GO7 802 A 1 HETATM 46 H H9 GO7 . . . C 3 -20.956 3.809 -21.842 1 51.58 ? H9 GO7 802 A 1 HETATM 47 H H11 GO7 . . . C 3 -21.114 3.446 -19.402 1 53.59 ? H11 GO7 802 A 1 HETATM 48 H H10 GO7 . . . C 3 -22.733 3.438 -20.12 1 53.93 ? H10 GO7 802 A 1 HETATM 49 H H13 GO7 . . . C 3 -24.178 5.344 -19.878 1 52.34 ? H13 GO7 802 A 1 HETATM 50 H H12 GO7 . . . C 3 -23.616 6.813 -19.1 1 52.18 ? H12 GO7 802 A 1 HETATM 51 H H14 GO7 . . . C 3 -23.202 4.748 -22.235 1 46.51 ? H14 GO7 802 A 1 HETATM 52 H H15 GO7 . . . C 3 -23.686 7.038 -21.566 1 47.41 ? H15 GO7 802 A 1 HETATM 53 H H16 GO7 . . . C 3 -23.069 -0.13 -28.001 1 52.48 ? H16 GO7 802 A 1 HETATM 54 H H18 GO7 . . . C 3 -23.584 0.37 -26.369 1 52.46 ? H18 GO7 802 A 1 HETATM 55 H H17 GO7 . . . C 3 -23.302 -1.342 -26.737 1 52.82 ? H17 GO7 802 A 1 HETATM 56 H H20 GO7 . . . C 3 -21.667 -1.737 -25.047 1 57.47 ? H20 GO7 802 A 1 HETATM 57 H H21 GO7 . . . C 3 -21.997 -0.102 -24.49 1 56.81 ? H21 GO7 802 A 1 HETATM 58 H H19 GO7 . . . C 3 -20.314 -0.615 -24.78 1 56.91 ? H19 GO7 802 A 1 HETATM 59 H H22 GO7 . . . C 3 -23.028 6.605 -17.017 1 55.24 ? H22 GO7 802 A 1 HETATM 60 H H23 GO7 . . . C 3 -21.771 7.614 -17.798 1 54.98 ? H23 GO7 802 A 1 HETATM 61 H H25 GO7 . . . C 3 -21.06 1.554 -27.738 1 61.76 ? H25 GO7 802 A 1 HETATM 62 H H24 GO7 . . . C 3 -19.988 1.322 -26.336 1 61.72 ? H24 GO7 802 A 1 HETATM 63 H H27 GO7 . . . C 3 -19.458 8.676 -23.087 1 50.31 ? H27 GO7 802 A 1 HETATM 64 H H26 GO7 . . . C 3 -20.388 7.316 -22.596 1 51.11 ? H26 GO7 802 A 1 HETATM 65 H H28 GO7 . . . C 3 -21.055 -1.925 -27.334 1 62.61 ? H28 GO7 802 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 423 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 65 #