data_6DKI
#
_model_server_result.job_id            jD-zqXg584ozdRiNW9yCng 
_model_server_result.datetime_utc      '2024-11-22 13:34:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dki 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":802}' 
#
_entry.id    6DKI 
#
_exptl.entry_id    6DKI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              474.381 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-amino-5-{[(3S)-4,4-difluoro-1-{[4-(trifluoromethoxy)phenyl]acetyl}pyrrolidin-3-yl]oxy}-N-methylpyridine-3-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          126.56 
_cell.angle_gamma         90 
_cell.entry_id            6DKI 
_cell.length_a            113.64 
_cell.length_b            45.51 
_cell.length_c            79.32 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DKI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H19 F5 N4 O4' 
_chem_comp.formula_weight    474.381 
_chem_comp.id                GOD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-amino-5-{[(3S)-4,4-difluoro-1-{[4-(trifluoromethoxy)phenyl]acetyl}pyrrolidin-3-yl]oxy}-N-methylpyridine-3-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C33 N32 GOD sing 155 n n 
N32 C2 GOD sing 156 n n 
C2 O31 GOD doub 157 n n 
C2 C1 GOD sing 158 n n 
C4 C1 GOD doub 159 n y 
C4 N6 GOD sing 160 n y 
C1 C3 GOD sing 161 n y 
N6 C8 GOD doub 162 n y 
C3 C5 GOD doub 163 n y 
C8 C5 GOD sing 164 n y 
C8 N10 GOD sing 165 n n 
C5 O7 GOD sing 166 n n 
O7 C9 GOD sing 167 n n 
F30 C12 GOD sing 168 n n 
C9 C12 GOD sing 169 n n 
C9 C11 GOD sing 170 n n 
C12 F29 GOD sing 171 n n 
C12 C14 GOD sing 172 n n 
C11 N13 GOD sing 173 n n 
C14 N13 GOD sing 174 n n 
N13 C15 GOD sing 175 n n 
C15 O17 GOD doub 176 n n 
C15 C16 GOD sing 177 n n 
C16 C18 GOD sing 178 n n 
C18 C23 GOD doub 179 n y 
C18 C19 GOD sing 180 n y 
C23 C22 GOD sing 181 n y 
C19 C20 GOD doub 182 n y 
C22 C21 GOD doub 183 n y 
C20 C21 GOD sing 184 n y 
C21 O24 GOD sing 185 n n 
F27 C25 GOD sing 186 n n 
O24 C25 GOD sing 187 n n 
C25 F28 GOD sing 188 n n 
C25 F26 GOD sing 189 n n 
C4 HC4 GOD sing 190 n n 
C20 HC20 GOD sing 191 n n 
C22 HC22 GOD sing 192 n n 
C3 HC3 GOD sing 193 n n 
C9 HC9 GOD sing 194 n n 
N10 H10B GOD sing 195 n n 
N10 H10A GOD sing 196 n n 
C11 H11B GOD sing 197 n n 
C11 H11A GOD sing 198 n n 
C14 H14B GOD sing 199 n n 
C14 H14A GOD sing 200 n n 
C16 H16A GOD sing 201 n n 
C16 H16B GOD sing 202 n n 
C19 HC19 GOD sing 203 n n 
C23 HC23 GOD sing 204 n n 
N32 HN32 GOD sing 205 n n 
C33 H33B GOD sing 206 n n 
C33 H33C GOD sing 207 n n 
C33 H33A GOD sing 208 n n 
#
_atom_sites.entry_id                     6DKI 
_atom_sites.fract_transf_matrix[1][1]    0.0088 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006526 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021973 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015696 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 22L A 1 801 1 22L CLL . 
C 3 GOD A 1 802 1 GOD LIG . 
D 4 HOH A 1 901 67 HOH HOH . 
D 4 HOH A 2 902 64 HOH HOH . 
D 4 HOH A 3 903 99 HOH HOH . 
D 4 HOH A 4 904 47 HOH HOH . 
D 4 HOH A 5 905 27 HOH HOH . 
D 4 HOH A 6 906 92 HOH HOH . 
D 4 HOH A 7 907 69 HOH HOH . 
D 4 HOH A 8 908 46 HOH HOH . 
D 4 HOH A 9 909 38 HOH HOH . 
D 4 HOH A 10 910 82 HOH HOH . 
D 4 HOH A 11 911 59 HOH HOH . 
D 4 HOH A 12 912 70 HOH HOH . 
D 4 HOH A 13 913 93 HOH HOH . 
D 4 HOH A 14 914 15 HOH HOH . 
D 4 HOH A 15 915 34 HOH HOH . 
D 4 HOH A 16 916 78 HOH HOH . 
D 4 HOH A 17 917 33 HOH HOH . 
D 4 HOH A 18 918 50 HOH HOH . 
D 4 HOH A 19 919 85 HOH HOH . 
D 4 HOH A 20 920 62 HOH HOH . 
D 4 HOH A 21 921 51 HOH HOH . 
D 4 HOH A 22 922 63 HOH HOH . 
D 4 HOH A 23 923 52 HOH HOH . 
D 4 HOH A 24 924 79 HOH HOH . 
D 4 HOH A 25 925 66 HOH HOH . 
D 4 HOH A 26 926 1 HOH HOH . 
D 4 HOH A 27 927 8 HOH HOH . 
D 4 HOH A 28 928 48 HOH HOH . 
D 4 HOH A 29 929 61 HOH HOH . 
D 4 HOH A 30 930 37 HOH HOH . 
D 4 HOH A 31 931 11 HOH HOH . 
D 4 HOH A 32 932 42 HOH HOH . 
D 4 HOH A 33 933 2 HOH HOH . 
D 4 HOH A 34 934 97 HOH HOH . 
D 4 HOH A 35 935 53 HOH HOH . 
D 4 HOH A 36 936 7 HOH HOH . 
D 4 HOH A 37 937 44 HOH HOH . 
D 4 HOH A 38 938 26 HOH HOH . 
D 4 HOH A 39 939 89 HOH HOH . 
D 4 HOH A 40 940 60 HOH HOH . 
D 4 HOH A 41 941 6 HOH HOH . 
D 4 HOH A 42 942 77 HOH HOH . 
D 4 HOH A 43 943 88 HOH HOH . 
D 4 HOH A 44 944 17 HOH HOH . 
D 4 HOH A 45 945 76 HOH HOH . 
D 4 HOH A 46 946 39 HOH HOH . 
D 4 HOH A 47 947 55 HOH HOH . 
D 4 HOH A 48 948 80 HOH HOH . 
D 4 HOH A 49 949 23 HOH HOH . 
D 4 HOH A 50 950 21 HOH HOH . 
D 4 HOH A 51 951 12 HOH HOH . 
D 4 HOH A 52 952 4 HOH HOH . 
D 4 HOH A 53 953 74 HOH HOH . 
D 4 HOH A 54 954 10 HOH HOH . 
D 4 HOH A 55 955 19 HOH HOH . 
D 4 HOH A 56 956 87 HOH HOH . 
D 4 HOH A 57 957 49 HOH HOH . 
D 4 HOH A 58 958 81 HOH HOH . 
D 4 HOH A 59 959 95 HOH HOH . 
D 4 HOH A 60 960 72 HOH HOH . 
D 4 HOH A 61 961 9 HOH HOH . 
D 4 HOH A 62 962 40 HOH HOH . 
D 4 HOH A 63 963 54 HOH HOH . 
D 4 HOH A 64 964 35 HOH HOH . 
D 4 HOH A 65 965 90 HOH HOH . 
D 4 HOH A 66 966 57 HOH HOH . 
D 4 HOH A 67 967 25 HOH HOH . 
D 4 HOH A 68 968 58 HOH HOH . 
D 4 HOH A 69 969 65 HOH HOH . 
D 4 HOH A 70 970 16 HOH HOH . 
D 4 HOH A 71 971 20 HOH HOH . 
D 4 HOH A 72 972 29 HOH HOH . 
D 4 HOH A 73 973 36 HOH HOH . 
D 4 HOH A 74 974 3 HOH HOH . 
D 4 HOH A 75 975 91 HOH HOH . 
D 4 HOH A 76 976 84 HOH HOH . 
D 4 HOH A 77 977 14 HOH HOH . 
D 4 HOH A 78 978 43 HOH HOH . 
D 4 HOH A 79 979 24 HOH HOH . 
D 4 HOH A 80 980 68 HOH HOH . 
D 4 HOH A 81 981 73 HOH HOH . 
D 4 HOH A 82 982 13 HOH HOH . 
D 4 HOH A 83 983 18 HOH HOH . 
D 4 HOH A 84 984 56 HOH HOH . 
D 4 HOH A 85 985 31 HOH HOH . 
D 4 HOH A 86 986 22 HOH HOH . 
D 4 HOH A 87 987 45 HOH HOH . 
D 4 HOH A 88 988 28 HOH HOH . 
D 4 HOH A 89 989 30 HOH HOH . 
D 4 HOH A 90 990 75 HOH HOH . 
D 4 HOH A 91 991 98 HOH HOH . 
D 4 HOH A 92 992 94 HOH HOH . 
D 4 HOH A 93 993 100 HOH HOH . 
D 4 HOH A 94 994 32 HOH HOH . 
D 4 HOH A 95 995 41 HOH HOH . 
D 4 HOH A 96 996 96 HOH HOH . 
D 4 HOH A 97 997 86 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 GOD . . . C 3 -19.052 6.768 -25.636 1 27.13 ? C4 GOD 802 A 1 
HETATM 2 C C5 GOD . . . C 3 -20.665 6.521 -23.443 1 25.22 ? C5 GOD 802 A 1 
HETATM 3 C C8 GOD . . . C 3 -19.756 7.578 -23.586 1 24.69 ? C8 GOD 802 A 1 
HETATM 4 C C15 GOD . . . C 3 -21.013 6.051 -18.412 1 28.05 ? C15 GOD 802 A 1 
HETATM 5 C C20 GOD . . . C 3 -20.606 6.18 -13.809 1 28.57 ? C20 GOD 802 A 1 
HETATM 6 C C21 GOD . . . C 3 -19.575 7.092 -13.619 1 29.6 ? C21 GOD 802 A 1 
HETATM 7 C C22 GOD . . . C 3 -19.257 7.991 -14.618 1 26.08 ? C22 GOD 802 A 1 
HETATM 8 C C1 GOD . . . C 3 -19.894 5.666 -25.56 1 27.9 ? C1 GOD 802 A 1 
HETATM 9 C C2 GOD . . . C 3 -20.004 4.559 -26.569 1 31.43 ? C2 GOD 802 A 1 
HETATM 10 C C3 GOD . . . C 3 -20.717 5.559 -24.441 1 25.04 ? C3 GOD 802 A 1 
HETATM 11 N N6 GOD . . . C 3 -18.966 7.695 -24.674 1 25.12 ? N6 GOD 802 A 1 
HETATM 12 O O7 GOD . . . C 3 -21.562 6.591 -22.396 1 26.99 ? O7 GOD 802 A 1 
HETATM 13 C C9 GOD . . . C 3 -22.069 5.403 -21.812 1 27.43 ? C9 GOD 802 A 1 
HETATM 14 N N10 GOD . . . C 3 -19.697 8.544 -22.662 1 24.99 ? N10 GOD 802 A 1 
HETATM 15 C C11 GOD . . . C 3 -21.183 5.024 -20.626 1 26.42 ? C11 GOD 802 A 1 
HETATM 16 C C12 GOD . . . C 3 -23.454 5.778 -21.169 1 32.34 ? C12 GOD 802 A 1 
HETATM 17 N N13 GOD . . . C 3 -21.7 5.863 -19.551 1 28.82 ? N13 GOD 802 A 1 
HETATM 18 C C14 GOD . . . C 3 -23.03 6.398 -19.841 1 30.2 ? C14 GOD 802 A 1 
HETATM 19 C C16 GOD . . . C 3 -21.662 6.949 -17.375 1 28.03 ? C16 GOD 802 A 1 
HETATM 20 O O17 GOD . . . C 3 -19.925 5.533 -18.235 1 26.57 ? O17 GOD 802 A 1 
HETATM 21 C C18 GOD . . . C 3 -20.953 7.024 -16.042 1 28.8 ? C18 GOD 802 A 1 
HETATM 22 C C19 GOD . . . C 3 -21.286 6.155 -15.014 1 28.11 ? C19 GOD 802 A 1 
HETATM 23 C C23 GOD . . . C 3 -19.947 7.954 -15.821 1 28.94 ? C23 GOD 802 A 1 
HETATM 24 O O24 GOD . . . C 3 -18.86 7.165 -12.409 1 38.3 ? O24 GOD 802 A 1 
HETATM 25 C C25 GOD . . . C 3 -18.171 6.088 -11.994 1 40.39 ? C25 GOD 802 A 1 
HETATM 26 F F26 GOD . . . C 3 -17.454 6.407 -10.958 1 40.62 ? F26 GOD 802 A 1 
HETATM 27 F F27 GOD . . . C 3 -17.341 5.566 -12.848 1 42.3 ? F27 GOD 802 A 1 
HETATM 28 F F28 GOD . . . C 3 -18.939 5.117 -11.606 1 40.56 ? F28 GOD 802 A 1 
HETATM 29 F F29 GOD . . . C 3 -24.267 4.686 -21 1 31.16 ? F29 GOD 802 A 1 
HETATM 30 F F30 GOD . . . C 3 -24.151 6.662 -21.937 1 30.03 ? F30 GOD 802 A 1 
HETATM 31 O O31 GOD . . . C 3 -20.784 3.625 -26.399 1 33.5 ? O31 GOD 802 A 1 
HETATM 32 N N32 GOD . . . C 3 -19.258 4.642 -27.669 1 33.73 ? N32 GOD 802 A 1 
HETATM 33 C C33 GOD . . . C 3 -19.409 3.695 -28.761 1 37.62 ? C33 GOD 802 A 1 
HETATM 34 H HC4 GOD . . . C 3 -18.446 6.993 -26.511 1 27.6 ? HC4 GOD 802 A 1 
HETATM 35 H HC20 GOD . . . C 3 -20.916 5.506 -13.013 1 28.62 ? HC20 GOD 802 A 1 
HETATM 36 H HC22 GOD . . . C 3 -18.487 8.744 -14.455 1 25.43 ? HC22 GOD 802 A 1 
HETATM 37 H HC3 GOD . . . C 3 -21.44 4.747 -24.391 1 24.96 ? HC3 GOD 802 A 1 
HETATM 38 H HC9 GOD . . . C 3 -22.191 4.561 -22.486 1 27.19 ? HC9 GOD 802 A 1 
HETATM 39 H H10B GOD . . . C 3 -19.078 9.343 -22.756 1 24.51 ? H10B GOD 802 A 1 
HETATM 40 H H10A GOD . . . C 3 -20.289 8.516 -21.838 1 24.67 ? H10A GOD 802 A 1 
HETATM 41 H H11B GOD . . . C 3 -20.129 5.215 -20.821 1 26.4 ? H11B GOD 802 A 1 
HETATM 42 H H11A GOD . . . C 3 -21.274 3.963 -20.401 1 27.32 ? H11A GOD 802 A 1 
HETATM 43 H H14B GOD . . . C 3 -23.779 6.179 -19.083 1 30.25 ? H14B GOD 802 A 1 
HETATM 44 H H14A GOD . . . C 3 -22.981 7.481 -19.929 1 30.22 ? H14A GOD 802 A 1 
HETATM 45 H H16A GOD . . . C 3 -22.692 6.656 -17.175 1 27.02 ? H16A GOD 802 A 1 
HETATM 46 H H16B GOD . . . C 3 -21.712 7.941 -17.815 1 27.97 ? H16B GOD 802 A 1 
HETATM 47 H HC19 GOD . . . C 3 -22.096 5.437 -15.133 1 27.77 ? HC19 GOD 802 A 1 
HETATM 48 H HC23 GOD . . . C 3 -19.722 8.687 -16.592 1 28.87 ? HC23 GOD 802 A 1 
HETATM 49 H HN32 GOD . . . C 3 -18.551 5.354 -27.815 1 33.57 ? HN32 GOD 802 A 1 
HETATM 50 H H33B GOD . . . C 3 -20.45 3.503 -29.019 1 36.89 ? H33B GOD 802 A 1 
HETATM 51 H H33C GOD . . . C 3 -18.963 2.727 -28.538 1 37.62 ? H33C GOD 802 A 1 
HETATM 52 H H33A GOD . . . C 3 -18.928 4.073 -29.662 1 38.01 ? H33A GOD 802 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           52 
#