data_6DLI
#
_model_server_result.job_id            jmgQYf24bDbjNNJu3XWRMA 
_model_server_result.datetime_utc      '2024-10-20 07:37:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dli 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":302}' 
#
_entry.id    6DLI 
#
_exptl.entry_id    6DLI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DLI 
_cell.length_a            80.888 
_cell.length_b            95.605 
_cell.length_c            179.284 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DLI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
? 3 K N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 141 n n 
C1 C2 GOL sing 142 n n 
C1 H11 GOL sing 143 n n 
C1 H12 GOL sing 144 n n 
O1 HO1 GOL sing 145 n n 
C2 O2 GOL sing 146 n n 
C2 C3 GOL sing 147 n n 
C2 H2 GOL sing 148 n n 
O2 HO2 GOL sing 149 n n 
C3 O3 GOL sing 150 n n 
C3 H31 GOL sing 151 n n 
C3 H32 GOL sing 152 n n 
O3 HO3 GOL sing 153 n n 
#
_atom_sites.entry_id                     6DLI 
_atom_sites.fract_transf_matrix[1][1]    0.012363 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01046 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005578 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 C2N A 1 301 301 C2N C2N . 
F 3 GOL A 1 302 1 GOL GOL . 
G 2 C2N B 1 301 301 C2N C2N . 
H 2 C2N C 1 301 301 C2N C2N . 
I 3 GOL C 1 302 3 GOL GOL . 
J 2 C2N D 1 301 301 C2N C2N . 
K 3 GOL D 1 302 4 GOL GOL . 
L 4 HOH A 1 401 1 HOH HOH . 
L 4 HOH A 2 402 34 HOH HOH . 
L 4 HOH A 3 403 4 HOH HOH . 
L 4 HOH A 4 404 5 HOH HOH . 
L 4 HOH A 5 405 20 HOH HOH . 
L 4 HOH A 6 406 67 HOH HOH . 
L 4 HOH A 7 407 44 HOH HOH . 
L 4 HOH A 8 408 65 HOH HOH . 
M 4 HOH B 1 401 32 HOH HOH . 
M 4 HOH B 2 402 17 HOH HOH . 
M 4 HOH B 3 403 18 HOH HOH . 
M 4 HOH B 4 404 36 HOH HOH . 
M 4 HOH B 5 405 33 HOH HOH . 
M 4 HOH B 6 406 29 HOH HOH . 
M 4 HOH B 7 407 2 HOH HOH . 
M 4 HOH B 8 408 43 HOH HOH . 
M 4 HOH B 9 409 13 HOH HOH . 
M 4 HOH B 10 410 53 HOH HOH . 
M 4 HOH B 11 411 54 HOH HOH . 
M 4 HOH B 12 412 49 HOH HOH . 
M 4 HOH B 13 413 45 HOH HOH . 
M 4 HOH B 14 414 57 HOH HOH . 
M 4 HOH B 15 415 62 HOH HOH . 
M 4 HOH B 16 416 55 HOH HOH . 
M 4 HOH B 17 417 58 HOH HOH . 
M 4 HOH B 18 418 56 HOH HOH . 
M 4 HOH B 19 419 60 HOH HOH . 
M 4 HOH B 20 420 59 HOH HOH . 
N 4 HOH C 1 401 22 HOH HOH . 
N 4 HOH C 2 402 63 HOH HOH . 
N 4 HOH C 3 403 30 HOH HOH . 
N 4 HOH C 4 404 31 HOH HOH . 
N 4 HOH C 5 405 15 HOH HOH . 
N 4 HOH C 6 406 21 HOH HOH . 
N 4 HOH C 7 407 41 HOH HOH . 
N 4 HOH C 8 408 24 HOH HOH . 
N 4 HOH C 9 409 16 HOH HOH . 
N 4 HOH C 10 410 8 HOH HOH . 
N 4 HOH C 11 411 27 HOH HOH . 
N 4 HOH C 12 412 23 HOH HOH . 
N 4 HOH C 13 413 39 HOH HOH . 
N 4 HOH C 14 414 51 HOH HOH . 
N 4 HOH C 15 415 28 HOH HOH . 
N 4 HOH C 16 416 50 HOH HOH . 
N 4 HOH C 17 417 38 HOH HOH . 
N 4 HOH C 18 418 37 HOH HOH . 
N 4 HOH C 19 419 52 HOH HOH . 
O 4 HOH D 1 401 40 HOH HOH . 
O 4 HOH D 2 402 25 HOH HOH . 
O 4 HOH D 3 403 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 3 -45.707 14.896 3.063 1 73.81 ? C1 GOL 302 D 1 
HETATM 2 O O1 GOL . . . K 3 -45.578 16.318 3.177 1 76 ? O1 GOL 302 D 1 
HETATM 3 C C2 GOL . . . K 3 -44.941 14.094 4.176 1 91.47 ? C2 GOL 302 D 1 
HETATM 4 O O2 GOL . . . K 3 -45.83 13.36 5.054 1 93.42 ? O2 GOL 302 D 1 
HETATM 5 C C3 GOL . . . K 3 -43.897 13.073 3.6 1 78.94 ? C3 GOL 302 D 1 
HETATM 6 O O3 GOL . . . K 3 -42.613 13.076 4.246 1 66.42 ? O3 GOL 302 D 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#