data_6DLU # _model_server_result.job_id Xgc7sS-yTetEKKZ5iT9FNg _model_server_result.datetime_utc '2024-12-23 06:21:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dlu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 6DLU # _exptl.entry_id 6DLU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 521.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DLU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DLU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 45 B SER 45 1_555 D MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc2 A OG1 THR 65 B THR 65 1_555 D MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? covale ? covale1 B NZ LYS 44 P LYS 44 1_555 E O1B GCP . P GCP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? metalc ? metalc3 B OG SER 45 P SER 45 1_555 F MG MG . P MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc4 B OG1 THR 65 P THR 65 1_555 F MG MG . P MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc5 C O2G GCP . B GCP 801 1_555 D MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc6 C O1B GCP . B GCP 801 1_555 D MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc7 E O1G GCP . P GCP 801 1_555 F MG MG . P MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc8 E O2B GCP . P GCP 801 1_555 F MG MG . P MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? # _chem_comp.formula 'C11 H18 N5 O13 P3' _chem_comp.formula_weight 521.208 _chem_comp.id GCP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6DLU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GCP B 1 801 1749 GCP GCP . D 3 MG B 1 802 1750 MG MG . E 2 GCP P 1 801 1749 GCP GCP . F 3 MG P 1 802 1750 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GCP . . . C 2 207.147 436.801 274.74 1 42.73 ? PG GCP 801 B 1 HETATM 2 O O1G GCP . . . C 2 208.096 436.863 273.549 1 42.73 ? O1G GCP 801 B 1 HETATM 3 O O2G GCP . . . C 2 207.917 437.068 276.014 1 42.73 ? O2G GCP 801 B 1 HETATM 4 O O3G GCP . . . C 2 206.46 435.394 274.802 1 42.73 ? O3G GCP 801 B 1 HETATM 5 C C3B GCP . . . C 2 205.859 438.106 274.566 1 42.73 ? C3B GCP 801 B 1 HETATM 6 P PB GCP . . . C 2 206.101 439.287 275.945 1 42.73 ? PB GCP 801 B 1 HETATM 7 O O1B GCP . . . C 2 207.443 439.929 275.85 1 42.73 ? O1B GCP 801 B 1 HETATM 8 O O2B GCP . . . C 2 205.984 438.555 277.264 1 42.73 ? O2B GCP 801 B 1 HETATM 9 O O3A GCP . . . C 2 204.962 440.43 275.865 1 42.73 ? O3A GCP 801 B 1 HETATM 10 P PA GCP . . . C 2 205.344 442.023 275.926 1 42.73 ? PA GCP 801 B 1 HETATM 11 O O1A GCP . . . C 2 206.416 442.313 274.91 1 42.73 ? O1A GCP 801 B 1 HETATM 12 O O2A GCP . . . C 2 205.862 442.351 277.354 1 42.73 -1 O2A GCP 801 B 1 HETATM 13 O O5' GCP . . . C 2 203.98 442.904 275.564 1 42.73 ? O5' GCP 801 B 1 HETATM 14 C C5' GCP . . . C 2 203.147 442.346 274.604 1 42.73 ? C5' GCP 801 B 1 HETATM 15 C C4' GCP . . . C 2 202.149 443.421 274.125 1 42.73 ? C4' GCP 801 B 1 HETATM 16 O O4' GCP . . . C 2 201.098 443.731 275.317 1 42.73 ? O4' GCP 801 B 1 HETATM 17 C C3' GCP . . . C 2 202.812 444.503 273.884 1 42.73 ? C3' GCP 801 B 1 HETATM 18 O O3' GCP . . . C 2 202.493 444.992 272.437 1 42.73 ? O3' GCP 801 B 1 HETATM 19 C C2' GCP . . . C 2 202.322 445.552 274.913 1 42.73 ? C2' GCP 801 B 1 HETATM 20 O O2' GCP . . . C 2 202.153 446.746 274.32 1 42.73 ? O2' GCP 801 B 1 HETATM 21 C C1' GCP . . . C 2 200.968 445.025 275.378 1 42.73 ? C1' GCP 801 B 1 HETATM 22 N N9 GCP . . . C 2 200.727 445.438 276.795 1 42.73 ? N9 GCP 801 B 1 HETATM 23 C C8 GCP . . . C 2 201.391 445.255 277.937 1 42.73 ? C8 GCP 801 B 1 HETATM 24 N N7 GCP . . . C 2 200.685 445.86 278.888 1 42.73 ? N7 GCP 801 B 1 HETATM 25 C C5 GCP . . . C 2 199.599 446.414 278.325 1 42.73 ? C5 GCP 801 B 1 HETATM 26 C C6 GCP . . . C 2 198.57 447.137 278.854 1 42.73 ? C6 GCP 801 B 1 HETATM 27 O O6 GCP . . . C 2 198.562 447.356 279.977 1 42.73 ? O6 GCP 801 B 1 HETATM 28 N N1 GCP . . . C 2 197.602 447.579 278.097 1 42.73 ? N1 GCP 801 B 1 HETATM 29 C C2 GCP . . . C 2 197.632 447.314 276.786 1 42.73 ? C2 GCP 801 B 1 HETATM 30 N N2 GCP . . . C 2 196.498 447.847 275.987 1 42.73 ? N2 GCP 801 B 1 HETATM 31 N N3 GCP . . . C 2 198.646 446.595 276.249 1 42.73 ? N3 GCP 801 B 1 HETATM 32 C C4 GCP . . . C 2 199.623 446.154 277.028 1 42.73 ? C4 GCP 801 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 211 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #