data_6DLU
#
_model_server_result.job_id            4J1XDMImigYnQt-kC11PJg 
_model_server_result.datetime_utc      '2024-11-04 20:48:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dlu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":801}' 
#
_entry.id    6DLU 
#
_exptl.entry_id    6DLU 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              521.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DLU 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DLU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 45 B SER 45 1_555 D MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? 
metalc ? metalc2 A OG1 THR 65 B THR 65 1_555 D MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? 
covale ? covale1 B NZ LYS 44 P LYS 44 1_555 E O1B GCP . P GCP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? 
metalc ? metalc3 B OG SER 45 P SER 45 1_555 F MG MG . P MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc4 B OG1 THR 65 P THR 65 1_555 F MG MG . P MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc5 C O2G GCP . B GCP 801 1_555 D MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc6 C O1B GCP . B GCP 801 1_555 D MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? 
metalc ? metalc7 E O1G GCP . P GCP 801 1_555 F MG MG . P MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? 
metalc ? metalc8 E O2B GCP . P GCP 801 1_555 F MG MG . P MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
#
_chem_comp.formula           'C11 H18 N5 O13 P3' 
_chem_comp.formula_weight    521.208 
_chem_comp.id                GCP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6DLU 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GCP B 1 801 1749 GCP GCP . 
D 3 MG B 1 802 1750 MG MG . 
E 2 GCP P 1 801 1749 GCP GCP . 
F 3 MG P 1 802 1750 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GCP . . . E 2 182.472 428.56 280.89 1 49.75 ? PG GCP 801 P 1 
HETATM 2 O O1G GCP . . . E 2 181.841 427.736 279.789 1 49.75 ? O1G GCP 801 P 1 
HETATM 3 O O2G GCP . . . E 2 183.921 428.029 281.159 1 49.75 ? O2G GCP 801 P 1 
HETATM 4 O O3G GCP . . . E 2 181.628 428.454 282.155 1 49.75 ? O3G GCP 801 P 1 
HETATM 5 C C3B GCP . . . E 2 182.518 430.317 280.33 1 49.75 ? C3B GCP 801 P 1 
HETATM 6 P PB GCP . . . E 2 182.212 430.25 278.527 1 49.75 ? PB GCP 801 P 1 
HETATM 7 O O1B GCP . . . E 2 183.171 429.258 277.911 1 49.75 ? O1B GCP 801 P 1 
HETATM 8 O O2B GCP . . . E 2 180.81 429.793 278.27 1 49.75 ? O2B GCP 801 P 1 
HETATM 9 O O3A GCP . . . E 2 182.405 431.73 277.891 1 49.75 ? O3A GCP 801 P 1 
HETATM 10 P PA GCP . . . E 2 181.118 432.67 277.474 1 49.75 ? PA GCP 801 P 1 
HETATM 11 O O1A GCP . . . E 2 180.684 432.34 276.021 1 49.75 -1 O1A GCP 801 P 1 
HETATM 12 O O2A GCP . . . E 2 179.984 432.371 278.408 1 49.75 ? O2A GCP 801 P 1 
HETATM 13 O O5' GCP . . . E 2 181.51 434.285 277.597 1 49.75 ? O5' GCP 801 P 1 
HETATM 14 C C5' GCP . . . E 2 181.421 434.883 278.849 1 49.75 ? C5' GCP 801 P 1 
HETATM 15 C C4' GCP . . . E 2 181.597 436.412 278.69 1 49.75 ? C4' GCP 801 P 1 
HETATM 16 O O4' GCP . . . E 2 182.557 436.711 277.42 1 49.75 ? O4' GCP 801 P 1 
HETATM 17 C C3' GCP . . . E 2 180.443 436.944 278.451 1 49.75 ? C3' GCP 801 P 1 
HETATM 18 O O3' GCP . . . E 2 180.256 438.206 279.353 1 49.75 ? O3' GCP 801 P 1 
HETATM 19 C C2' GCP . . . E 2 180.487 437.385 276.972 1 49.75 ? C2' GCP 801 P 1 
HETATM 20 O O2' GCP . . . E 2 179.81 438.533 276.811 1 49.75 ? O2' GCP 801 P 1 
HETATM 21 C C1' GCP . . . E 2 181.968 437.629 276.712 1 49.75 ? C1' GCP 801 P 1 
HETATM 22 N N9 GCP . . . E 2 182.205 437.394 275.256 1 49.75 ? N9 GCP 801 P 1 
HETATM 23 C C8 GCP . . . E 2 182.245 436.301 274.492 1 49.75 ? C8 GCP 801 P 1 
HETATM 24 N N7 GCP . . . E 2 182.477 436.707 273.248 1 49.75 ? N7 GCP 801 P 1 
HETATM 25 C C5 GCP . . . E 2 182.573 438.046 273.256 1 49.75 ? C5 GCP 801 P 1 
HETATM 26 C C6 GCP . . . E 2 182.805 438.943 272.257 1 49.75 ? C6 GCP 801 P 1 
HETATM 27 O O6 GCP . . . E 2 182.955 438.567 271.185 1 49.75 ? O6 GCP 801 P 1 
HETATM 28 N N1 GCP . . . E 2 182.857 440.221 272.509 1 49.75 ? N1 GCP 801 P 1 
HETATM 29 C C2 GCP . . . E 2 182.679 440.648 273.762 1 49.75 ? C2 GCP 801 P 1 
HETATM 30 N N2 GCP . . . E 2 182.758 442.118 273.957 1 49.75 ? N2 GCP 801 P 1 
HETATM 31 N N3 GCP . . . E 2 182.451 439.77 274.764 1 49.75 ? N3 GCP 801 P 1 
HETATM 32 C C4 GCP . . . E 2 182.402 438.474 274.497 1 49.75 ? C4 GCP 801 P 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#