data_6DLX # _model_server_result.job_id lXHXmeLx9s53SN7iPAfo1g _model_server_result.datetime_utc '2024-11-16 13:45:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dlx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":504}' # _entry.id 6DLX # _exptl.entry_id 6DLX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 18.038 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'AMMONIUM ION' _entity.pdbx_number_of_molecules 17 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.41 _cell.angle_gamma 90 _cell.entry_id 6DLX _cell.length_a 34.451 _cell.length_b 76.02 _cell.length_c 107.882 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DLX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N # _chem_comp.formula 'H4 N 1' _chem_comp.formula_weight 18.038 _chem_comp.id NH4 _chem_comp.mon_nstd_flag . _chem_comp.name 'AMMONIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N HN1 NH4 sing 246 n n N HN2 NH4 sing 247 n n N HN3 NH4 sing 248 n n N HN4 NH4 sing 249 n n # _atom_sites.entry_id 6DLX _atom_sites.fract_transf_matrix[1][1] 0.029027 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000208 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013154 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00927 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GXY A 1 501 2 GXY DRG . D 2 GXY A 1 502 3 GXY DRG . E 3 NH4 A 1 503 1 NH4 NH4 . F 3 NH4 A 1 504 2 NH4 NH4 . G 3 NH4 A 1 505 5 NH4 NH4 . H 3 NH4 A 1 506 11 NH4 NH4 . I 3 NH4 A 1 507 13 NH4 NH4 . J 3 NH4 A 1 508 16 NH4 NH4 . K 3 NH4 A 1 509 18 NH4 NH4 . L 3 NH4 A 1 510 24 NH4 NH4 . M 4 PEG A 1 511 1 PEG PEG . N 2 GXY B 1 501 1 GXY DRG . O 2 GXY B 1 502 4 GXY DRG . P 3 NH4 B 1 503 3 NH4 NH4 . Q 3 NH4 B 1 504 4 NH4 NH4 . R 3 NH4 B 1 505 7 NH4 NH4 . S 3 NH4 B 1 506 9 NH4 NH4 . T 3 NH4 B 1 507 14 NH4 NH4 . U 3 NH4 B 1 508 17 NH4 NH4 . V 3 NH4 B 1 509 19 NH4 NH4 . W 3 NH4 B 1 510 20 NH4 NH4 . X 3 NH4 B 1 511 21 NH4 NH4 . Y 5 HOH A 1 601 99 HOH HOH . Y 5 HOH A 2 602 18 HOH HOH . Y 5 HOH A 3 603 274 HOH HOH . Y 5 HOH A 4 604 104 HOH HOH . Y 5 HOH A 5 605 171 HOH HOH . Y 5 HOH A 6 606 160 HOH HOH . Y 5 HOH A 7 607 162 HOH HOH . Y 5 HOH A 8 608 27 HOH HOH . Y 5 HOH A 9 609 158 HOH HOH . Y 5 HOH A 10 610 70 HOH HOH . Y 5 HOH A 11 611 85 HOH HOH . Y 5 HOH A 12 612 123 HOH HOH . Y 5 HOH A 13 613 115 HOH HOH . Y 5 HOH A 14 614 217 HOH HOH . Y 5 HOH A 15 615 76 HOH HOH . Y 5 HOH A 16 616 33 HOH HOH . Y 5 HOH A 17 617 181 HOH HOH . Y 5 HOH A 18 618 3 HOH HOH . Y 5 HOH A 19 619 116 HOH HOH . Y 5 HOH A 20 620 271 HOH HOH . Y 5 HOH A 21 621 39 HOH HOH . Y 5 HOH A 22 622 188 HOH HOH . Y 5 HOH A 23 623 34 HOH HOH . Y 5 HOH A 24 624 82 HOH HOH . Y 5 HOH A 25 625 10 HOH HOH . Y 5 HOH A 26 626 5 HOH HOH . Y 5 HOH A 27 627 19 HOH HOH . Y 5 HOH A 28 628 44 HOH HOH . Y 5 HOH A 29 629 17 HOH HOH . Y 5 HOH A 30 630 4 HOH HOH . Y 5 HOH A 31 631 53 HOH HOH . Y 5 HOH A 32 632 148 HOH HOH . Y 5 HOH A 33 633 43 HOH HOH . Y 5 HOH A 34 634 62 HOH HOH . Y 5 HOH A 35 635 113 HOH HOH . Y 5 HOH A 36 636 240 HOH HOH . Y 5 HOH A 37 637 269 HOH HOH . Y 5 HOH A 38 638 57 HOH HOH . Y 5 HOH A 39 639 63 HOH HOH . Y 5 HOH A 40 640 86 HOH HOH . Y 5 HOH A 41 641 208 HOH HOH . Y 5 HOH A 42 642 182 HOH HOH . Y 5 HOH A 43 643 229 HOH HOH . Y 5 HOH A 44 644 134 HOH HOH . Y 5 HOH A 45 645 35 HOH HOH . Y 5 HOH A 46 646 246 HOH HOH . Y 5 HOH A 47 647 52 HOH HOH . Y 5 HOH A 48 648 120 HOH HOH . Y 5 HOH A 49 649 112 HOH HOH . Y 5 HOH A 50 650 31 HOH HOH . Y 5 HOH A 51 651 30 HOH HOH . Y 5 HOH A 52 652 124 HOH HOH . Y 5 HOH A 53 653 190 HOH HOH . Y 5 HOH A 54 654 135 HOH HOH . Y 5 HOH A 55 655 58 HOH HOH . Y 5 HOH A 56 656 179 HOH HOH . Y 5 HOH A 57 657 210 HOH HOH . Y 5 HOH A 58 658 272 HOH HOH . Y 5 HOH A 59 659 119 HOH HOH . Y 5 HOH A 60 660 48 HOH HOH . Y 5 HOH A 61 661 128 HOH HOH . Y 5 HOH A 62 662 216 HOH HOH . Y 5 HOH A 63 663 83 HOH HOH . Y 5 HOH A 64 664 1 HOH HOH . Y 5 HOH A 65 665 64 HOH HOH . Y 5 HOH A 66 666 68 HOH HOH . Y 5 HOH A 67 667 14 HOH HOH . Y 5 HOH A 68 668 248 HOH HOH . Y 5 HOH A 69 669 55 HOH HOH . Y 5 HOH A 70 670 130 HOH HOH . Y 5 HOH A 71 671 106 HOH HOH . Y 5 HOH A 72 672 54 HOH HOH . Y 5 HOH A 73 673 242 HOH HOH . Y 5 HOH A 74 674 80 HOH HOH . Y 5 HOH A 75 675 214 HOH HOH . Y 5 HOH A 76 676 50 HOH HOH . Y 5 HOH A 77 677 89 HOH HOH . Y 5 HOH A 78 678 165 HOH HOH . Y 5 HOH A 79 679 100 HOH HOH . Y 5 HOH A 80 680 260 HOH HOH . Y 5 HOH A 81 681 245 HOH HOH . Y 5 HOH A 82 682 202 HOH HOH . Y 5 HOH A 83 683 192 HOH HOH . Y 5 HOH A 84 684 187 HOH HOH . Y 5 HOH A 85 685 276 HOH HOH . Y 5 HOH A 86 686 207 HOH HOH . Y 5 HOH A 87 687 256 HOH HOH . Y 5 HOH A 88 688 168 HOH HOH . Y 5 HOH A 89 689 41 HOH HOH . Y 5 HOH A 90 690 221 HOH HOH . Y 5 HOH A 91 691 238 HOH HOH . Y 5 HOH A 92 692 212 HOH HOH . Y 5 HOH A 93 693 131 HOH HOH . Y 5 HOH A 94 694 88 HOH HOH . Y 5 HOH A 95 695 101 HOH HOH . Y 5 HOH A 96 696 201 HOH HOH . Y 5 HOH A 97 697 127 HOH HOH . Y 5 HOH A 98 698 185 HOH HOH . Y 5 HOH A 99 699 126 HOH HOH . Y 5 HOH A 100 700 103 HOH HOH . Y 5 HOH A 101 701 180 HOH HOH . Y 5 HOH A 102 702 254 HOH HOH . Y 5 HOH A 103 703 73 HOH HOH . Y 5 HOH A 104 704 173 HOH HOH . Y 5 HOH A 105 705 150 HOH HOH . Y 5 HOH A 106 706 152 HOH HOH . Y 5 HOH A 107 707 261 HOH HOH . Y 5 HOH A 108 708 178 HOH HOH . Y 5 HOH A 109 709 114 HOH HOH . Y 5 HOH A 110 710 234 HOH HOH . Y 5 HOH A 111 711 196 HOH HOH . Y 5 HOH A 112 712 117 HOH HOH . Y 5 HOH A 113 713 163 HOH HOH . Y 5 HOH A 114 714 81 HOH HOH . Y 5 HOH A 115 715 195 HOH HOH . Y 5 HOH A 116 716 225 HOH HOH . Z 5 HOH B 1 601 205 HOH HOH . Z 5 HOH B 2 602 169 HOH HOH . Z 5 HOH B 3 603 67 HOH HOH . Z 5 HOH B 4 604 122 HOH HOH . Z 5 HOH B 5 605 176 HOH HOH . Z 5 HOH B 6 606 265 HOH HOH . Z 5 HOH B 7 607 177 HOH HOH . Z 5 HOH B 8 608 69 HOH HOH . Z 5 HOH B 9 609 132 HOH HOH . Z 5 HOH B 10 610 96 HOH HOH . Z 5 HOH B 11 611 21 HOH HOH . Z 5 HOH B 12 612 213 HOH HOH . Z 5 HOH B 13 613 9 HOH HOH . Z 5 HOH B 14 614 60 HOH HOH . Z 5 HOH B 15 615 223 HOH HOH . Z 5 HOH B 16 616 6 HOH HOH . Z 5 HOH B 17 617 247 HOH HOH . Z 5 HOH B 18 618 147 HOH HOH . Z 5 HOH B 19 619 136 HOH HOH . Z 5 HOH B 20 620 47 HOH HOH . Z 5 HOH B 21 621 172 HOH HOH . Z 5 HOH B 22 622 108 HOH HOH . Z 5 HOH B 23 623 59 HOH HOH . Z 5 HOH B 24 624 258 HOH HOH . Z 5 HOH B 25 625 140 HOH HOH . Z 5 HOH B 26 626 129 HOH HOH . Z 5 HOH B 27 627 228 HOH HOH . Z 5 HOH B 28 628 36 HOH HOH . Z 5 HOH B 29 629 253 HOH HOH . Z 5 HOH B 30 630 90 HOH HOH . Z 5 HOH B 31 631 75 HOH HOH . Z 5 HOH B 32 632 257 HOH HOH . Z 5 HOH B 33 633 65 HOH HOH . Z 5 HOH B 34 634 7 HOH HOH . Z 5 HOH B 35 635 157 HOH HOH . Z 5 HOH B 36 636 74 HOH HOH . Z 5 HOH B 37 637 264 HOH HOH . Z 5 HOH B 38 638 137 HOH HOH . Z 5 HOH B 39 639 249 HOH HOH . Z 5 HOH B 40 640 139 HOH HOH . Z 5 HOH B 41 641 118 HOH HOH . Z 5 HOH B 42 642 2 HOH HOH . Z 5 HOH B 43 643 71 HOH HOH . Z 5 HOH B 44 644 45 HOH HOH . Z 5 HOH B 45 645 29 HOH HOH . Z 5 HOH B 46 646 125 HOH HOH . Z 5 HOH B 47 647 42 HOH HOH . Z 5 HOH B 48 648 193 HOH HOH . Z 5 HOH B 49 649 46 HOH HOH . Z 5 HOH B 50 650 149 HOH HOH . Z 5 HOH B 51 651 92 HOH HOH . Z 5 HOH B 52 652 37 HOH HOH . Z 5 HOH B 53 653 8 HOH HOH . Z 5 HOH B 54 654 262 HOH HOH . Z 5 HOH B 55 655 183 HOH HOH . Z 5 HOH B 56 656 236 HOH HOH . Z 5 HOH B 57 657 110 HOH HOH . Z 5 HOH B 58 658 97 HOH HOH . Z 5 HOH B 59 659 263 HOH HOH . Z 5 HOH B 60 660 38 HOH HOH . Z 5 HOH B 61 661 204 HOH HOH . Z 5 HOH B 62 662 87 HOH HOH . Z 5 HOH B 63 663 15 HOH HOH . Z 5 HOH B 64 664 12 HOH HOH . Z 5 HOH B 65 665 215 HOH HOH . Z 5 HOH B 66 666 20 HOH HOH . Z 5 HOH B 67 667 22 HOH HOH . Z 5 HOH B 68 668 61 HOH HOH . Z 5 HOH B 69 669 174 HOH HOH . Z 5 HOH B 70 670 277 HOH HOH . Z 5 HOH B 71 671 191 HOH HOH . Z 5 HOH B 72 672 275 HOH HOH . Z 5 HOH B 73 673 94 HOH HOH . Z 5 HOH B 74 674 250 HOH HOH . Z 5 HOH B 75 675 51 HOH HOH . Z 5 HOH B 76 676 138 HOH HOH . Z 5 HOH B 77 677 109 HOH HOH . Z 5 HOH B 78 678 49 HOH HOH . Z 5 HOH B 79 679 243 HOH HOH . Z 5 HOH B 80 680 26 HOH HOH . Z 5 HOH B 81 681 28 HOH HOH . Z 5 HOH B 82 682 159 HOH HOH . Z 5 HOH B 83 683 121 HOH HOH . Z 5 HOH B 84 684 98 HOH HOH . Z 5 HOH B 85 685 267 HOH HOH . Z 5 HOH B 86 686 56 HOH HOH . Z 5 HOH B 87 687 78 HOH HOH . Z 5 HOH B 88 688 77 HOH HOH . Z 5 HOH B 89 689 93 HOH HOH . Z 5 HOH B 90 690 24 HOH HOH . Z 5 HOH B 91 691 145 HOH HOH . Z 5 HOH B 92 692 32 HOH HOH . Z 5 HOH B 93 693 199 HOH HOH . Z 5 HOH B 94 694 133 HOH HOH . Z 5 HOH B 95 695 232 HOH HOH . Z 5 HOH B 96 696 209 HOH HOH . Z 5 HOH B 97 697 186 HOH HOH . Z 5 HOH B 98 698 16 HOH HOH . Z 5 HOH B 99 699 161 HOH HOH . Z 5 HOH B 100 700 252 HOH HOH . Z 5 HOH B 101 701 194 HOH HOH . Z 5 HOH B 102 702 154 HOH HOH . Z 5 HOH B 103 703 241 HOH HOH . Z 5 HOH B 104 704 66 HOH HOH . Z 5 HOH B 105 705 203 HOH HOH . Z 5 HOH B 106 706 153 HOH HOH . Z 5 HOH B 107 707 111 HOH HOH . Z 5 HOH B 108 708 95 HOH HOH . Z 5 HOH B 109 709 105 HOH HOH . Z 5 HOH B 110 710 25 HOH HOH . Z 5 HOH B 111 711 222 HOH HOH . Z 5 HOH B 112 712 230 HOH HOH . Z 5 HOH B 113 713 197 HOH HOH . Z 5 HOH B 114 714 156 HOH HOH . Z 5 HOH B 115 715 170 HOH HOH . Z 5 HOH B 116 716 239 HOH HOH . Z 5 HOH B 117 717 200 HOH HOH . Z 5 HOH B 118 718 91 HOH HOH . Z 5 HOH B 119 719 224 HOH HOH . Z 5 HOH B 120 720 102 HOH HOH . Z 5 HOH B 121 721 219 HOH HOH . Z 5 HOH B 122 722 251 HOH HOH . Z 5 HOH B 123 723 231 HOH HOH . Z 5 HOH B 124 724 141 HOH HOH . Z 5 HOH B 125 725 13 HOH HOH . Z 5 HOH B 126 726 211 HOH HOH . Z 5 HOH B 127 727 226 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NH4 . . . Q 3 41.726 -54.048 11.021 1 23.39 ? N NH4 504 B 1 HETATM 2 H HN1 NH4 . . . Q 3 42.583 -54.032 11.495 1 28.07 ? HN1 NH4 504 B 1 HETATM 3 H HN2 NH4 . . . Q 3 41.654 -54.878 10.503 1 28.07 ? HN2 NH4 504 B 1 HETATM 4 H HN3 NH4 . . . Q 3 41.673 -53.28 10.415 1 28.07 ? HN3 NH4 504 B 1 HETATM 5 H HN4 NH4 . . . Q 3 40.993 -54.004 11.669 1 28.07 ? HN4 NH4 504 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #