data_6DMG # _model_server_result.job_id IsGNRO02KPAEG2eYnDEjPw _model_server_result.datetime_utc '2024-11-14 08:17:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dmg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 6DMG # _exptl.entry_id 6DMG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.11 _cell.angle_gamma 90 _cell.entry_id 6DMG _cell.length_a 48.78 _cell.length_b 70.7 _cell.length_c 60.86 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DMG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 150 A THR 158 1_555 A N CME 151 A CME 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C CME 151 A CME 159 1_555 A N ASP 152 A ASP 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 388 n n S O2 SO4 doub 389 n n S O3 SO4 sing 390 n n S O4 SO4 sing 391 n n # _atom_sites.entry_id 6DMG _atom_sites.fract_transf_matrix[1][1] 0.0205 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007506 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017498 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 402 SO4 SO4 . C 2 SO4 A 1 402 403 SO4 SO4 . D 2 SO4 A 1 403 404 SO4 SO4 . E 3 EDO A 1 404 405 EDO EDO . F 3 EDO A 1 405 406 EDO EDO . G 3 EDO A 1 406 407 EDO EDO . H 4 EK6 A 1 407 401 EK6 EK6 . I 5 HOH A 1 501 611 HOH HOH . I 5 HOH A 2 502 653 HOH HOH . I 5 HOH A 3 503 532 HOH HOH . I 5 HOH A 4 504 596 HOH HOH . I 5 HOH A 5 505 588 HOH HOH . I 5 HOH A 6 506 651 HOH HOH . I 5 HOH A 7 507 1 HOH HOH . I 5 HOH A 8 508 655 HOH HOH . I 5 HOH A 9 509 598 HOH HOH . I 5 HOH A 10 510 645 HOH HOH . I 5 HOH A 11 511 637 HOH HOH . I 5 HOH A 12 512 579 HOH HOH . I 5 HOH A 13 513 650 HOH HOH . I 5 HOH A 14 514 534 HOH HOH . I 5 HOH A 15 515 649 HOH HOH . I 5 HOH A 16 516 639 HOH HOH . I 5 HOH A 17 517 654 HOH HOH . I 5 HOH A 18 518 559 HOH HOH . I 5 HOH A 19 519 566 HOH HOH . I 5 HOH A 20 520 530 HOH HOH . I 5 HOH A 21 521 666 HOH HOH . I 5 HOH A 22 522 529 HOH HOH . I 5 HOH A 23 523 625 HOH HOH . I 5 HOH A 24 524 663 HOH HOH . I 5 HOH A 25 525 560 HOH HOH . I 5 HOH A 26 526 592 HOH HOH . I 5 HOH A 27 527 636 HOH HOH . I 5 HOH A 28 528 658 HOH HOH . I 5 HOH A 29 529 536 HOH HOH . I 5 HOH A 30 530 634 HOH HOH . I 5 HOH A 31 531 632 HOH HOH . I 5 HOH A 32 532 661 HOH HOH . I 5 HOH A 33 533 587 HOH HOH . I 5 HOH A 34 534 501 HOH HOH . I 5 HOH A 35 535 507 HOH HOH . I 5 HOH A 36 536 527 HOH HOH . I 5 HOH A 37 537 617 HOH HOH . I 5 HOH A 38 538 526 HOH HOH . I 5 HOH A 39 539 644 HOH HOH . I 5 HOH A 40 540 585 HOH HOH . I 5 HOH A 41 541 590 HOH HOH . I 5 HOH A 42 542 531 HOH HOH . I 5 HOH A 43 543 551 HOH HOH . I 5 HOH A 44 544 504 HOH HOH . I 5 HOH A 45 545 562 HOH HOH . I 5 HOH A 46 546 662 HOH HOH . I 5 HOH A 47 547 657 HOH HOH . I 5 HOH A 48 548 543 HOH HOH . I 5 HOH A 49 549 513 HOH HOH . I 5 HOH A 50 550 528 HOH HOH . I 5 HOH A 51 551 570 HOH HOH . I 5 HOH A 52 552 508 HOH HOH . I 5 HOH A 53 553 512 HOH HOH . I 5 HOH A 54 554 605 HOH HOH . I 5 HOH A 55 555 525 HOH HOH . I 5 HOH A 56 556 609 HOH HOH . I 5 HOH A 57 557 510 HOH HOH . I 5 HOH A 58 558 567 HOH HOH . I 5 HOH A 59 559 546 HOH HOH . I 5 HOH A 60 560 631 HOH HOH . I 5 HOH A 61 561 533 HOH HOH . I 5 HOH A 62 562 640 HOH HOH . I 5 HOH A 63 563 503 HOH HOH . I 5 HOH A 64 564 667 HOH HOH . I 5 HOH A 65 565 511 HOH HOH . I 5 HOH A 66 566 541 HOH HOH . I 5 HOH A 67 567 652 HOH HOH . I 5 HOH A 68 568 647 HOH HOH . I 5 HOH A 69 569 591 HOH HOH . I 5 HOH A 70 570 601 HOH HOH . I 5 HOH A 71 571 517 HOH HOH . I 5 HOH A 72 572 547 HOH HOH . I 5 HOH A 73 573 505 HOH HOH . I 5 HOH A 74 574 540 HOH HOH . I 5 HOH A 75 575 521 HOH HOH . I 5 HOH A 76 576 604 HOH HOH . I 5 HOH A 77 577 535 HOH HOH . I 5 HOH A 78 578 577 HOH HOH . I 5 HOH A 79 579 556 HOH HOH . I 5 HOH A 80 580 648 HOH HOH . I 5 HOH A 81 581 548 HOH HOH . I 5 HOH A 82 582 518 HOH HOH . I 5 HOH A 83 583 584 HOH HOH . I 5 HOH A 84 584 502 HOH HOH . I 5 HOH A 85 585 593 HOH HOH . I 5 HOH A 86 586 506 HOH HOH . I 5 HOH A 87 587 520 HOH HOH . I 5 HOH A 88 588 633 HOH HOH . I 5 HOH A 89 589 516 HOH HOH . I 5 HOH A 90 590 515 HOH HOH . I 5 HOH A 91 591 509 HOH HOH . I 5 HOH A 92 592 519 HOH HOH . I 5 HOH A 93 593 583 HOH HOH . I 5 HOH A 94 594 643 HOH HOH . I 5 HOH A 95 595 568 HOH HOH . I 5 HOH A 96 596 623 HOH HOH . I 5 HOH A 97 597 627 HOH HOH . I 5 HOH A 98 598 580 HOH HOH . I 5 HOH A 99 599 614 HOH HOH . I 5 HOH A 100 600 628 HOH HOH . I 5 HOH A 101 601 564 HOH HOH . I 5 HOH A 102 602 586 HOH HOH . I 5 HOH A 103 603 600 HOH HOH . I 5 HOH A 104 604 602 HOH HOH . I 5 HOH A 105 605 597 HOH HOH . I 5 HOH A 106 606 621 HOH HOH . I 5 HOH A 107 607 618 HOH HOH . I 5 HOH A 108 608 606 HOH HOH . I 5 HOH A 109 609 581 HOH HOH . I 5 HOH A 110 610 538 HOH HOH . I 5 HOH A 111 611 545 HOH HOH . I 5 HOH A 112 612 620 HOH HOH . I 5 HOH A 113 613 561 HOH HOH . I 5 HOH A 114 614 635 HOH HOH . I 5 HOH A 115 615 595 HOH HOH . I 5 HOH A 116 616 660 HOH HOH . I 5 HOH A 117 617 613 HOH HOH . I 5 HOH A 118 618 565 HOH HOH . I 5 HOH A 119 619 573 HOH HOH . I 5 HOH A 120 620 549 HOH HOH . I 5 HOH A 121 621 537 HOH HOH . I 5 HOH A 122 622 569 HOH HOH . I 5 HOH A 123 623 575 HOH HOH . I 5 HOH A 124 624 576 HOH HOH . I 5 HOH A 125 625 572 HOH HOH . I 5 HOH A 126 626 554 HOH HOH . I 5 HOH A 127 627 553 HOH HOH . I 5 HOH A 128 628 668 HOH HOH . I 5 HOH A 129 629 555 HOH HOH . I 5 HOH A 130 630 612 HOH HOH . I 5 HOH A 131 631 616 HOH HOH . I 5 HOH A 132 632 638 HOH HOH . I 5 HOH A 133 633 514 HOH HOH . I 5 HOH A 134 634 642 HOH HOH . I 5 HOH A 135 635 563 HOH HOH . I 5 HOH A 136 636 539 HOH HOH . I 5 HOH A 137 637 578 HOH HOH . I 5 HOH A 138 638 622 HOH HOH . I 5 HOH A 139 639 523 HOH HOH . I 5 HOH A 140 640 571 HOH HOH . I 5 HOH A 141 641 656 HOH HOH . I 5 HOH A 142 642 624 HOH HOH . I 5 HOH A 143 643 599 HOH HOH . I 5 HOH A 144 644 629 HOH HOH . I 5 HOH A 145 645 589 HOH HOH . I 5 HOH A 146 646 665 HOH HOH . I 5 HOH A 147 647 626 HOH HOH . I 5 HOH A 148 648 608 HOH HOH . I 5 HOH A 149 649 610 HOH HOH . I 5 HOH A 150 650 544 HOH HOH . I 5 HOH A 151 651 557 HOH HOH . I 5 HOH A 152 652 542 HOH HOH . I 5 HOH A 153 653 550 HOH HOH . I 5 HOH A 154 654 522 HOH HOH . I 5 HOH A 155 655 582 HOH HOH . I 5 HOH A 156 656 558 HOH HOH . I 5 HOH A 157 657 615 HOH HOH . I 5 HOH A 158 658 659 HOH HOH . I 5 HOH A 159 659 619 HOH HOH . I 5 HOH A 160 660 669 HOH HOH . I 5 HOH A 161 661 646 HOH HOH . I 5 HOH A 162 662 552 HOH HOH . I 5 HOH A 163 663 574 HOH HOH . I 5 HOH A 164 664 524 HOH HOH . I 5 HOH A 165 665 603 HOH HOH . I 5 HOH A 166 666 641 HOH HOH . I 5 HOH A 167 667 607 HOH HOH . I 5 HOH A 168 668 630 HOH HOH . I 5 HOH A 169 669 594 HOH HOH . I 5 HOH A 170 670 664 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 2 3.594 17.857 6.969 1 76.9 ? S SO4 403 A 1 HETATM 2 O O1 SO4 . . . D 2 3.346 18.342 5.613 1 63.75 ? O1 SO4 403 A 1 HETATM 3 O O2 SO4 . . . D 2 4.036 16.467 6.916 1 63.01 ? O2 SO4 403 A 1 HETATM 4 O O3 SO4 . . . D 2 4.63 18.673 7.597 1 86.22 ? O3 SO4 403 A 1 HETATM 5 O O4 SO4 . . . D 2 2.365 17.947 7.752 1 67.36 ? O4 SO4 403 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 5 #