data_6DMK # _model_server_result.job_id QspSBVNjx7yix7UCgXKHLg _model_server_result.datetime_utc '2024-11-27 18:05:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dmk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1203}' # _entry.id 6DMK # _exptl.entry_id 6DMK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.87 _cell.angle_gamma 90 _cell.entry_id 6DMK _cell.length_a 24.697 _cell.length_b 44.311 _cell.length_c 52.916 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DMK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 149 n n C1 C2 EDO sing 150 n n C1 H11 EDO sing 151 n n C1 H12 EDO sing 152 n n O1 HO1 EDO sing 153 n n C2 O2 EDO sing 154 n n C2 H21 EDO sing 155 n n C2 H22 EDO sing 156 n n O2 HO2 EDO sing 157 n n # _atom_sites.entry_id 6DMK _atom_sites.fract_transf_matrix[1][1] 0.040491 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004163 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022568 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018997 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 A 1 1201 1202 NO3 NO3 . C 3 2LL A 1 1202 1201 2LL 2LL . D 4 EDO A 1 1203 1203 EDO EDO . E 5 HOH A 1 1301 1378 HOH HOH . E 5 HOH A 2 1302 1347 HOH HOH . E 5 HOH A 3 1303 1340 HOH HOH . E 5 HOH A 4 1304 1363 HOH HOH . E 5 HOH A 5 1305 1361 HOH HOH . E 5 HOH A 6 1306 1369 HOH HOH . E 5 HOH A 7 1307 1354 HOH HOH . E 5 HOH A 8 1308 1364 HOH HOH . E 5 HOH A 9 1309 1345 HOH HOH . E 5 HOH A 10 1310 1352 HOH HOH . E 5 HOH A 11 1311 1328 HOH HOH . E 5 HOH A 12 1312 1355 HOH HOH . E 5 HOH A 13 1313 1341 HOH HOH . E 5 HOH A 14 1314 1309 HOH HOH . E 5 HOH A 15 1315 1346 HOH HOH . E 5 HOH A 16 1316 1311 HOH HOH . E 5 HOH A 17 1317 1353 HOH HOH . E 5 HOH A 18 1318 1316 HOH HOH . E 5 HOH A 19 1319 1335 HOH HOH . E 5 HOH A 20 1320 1322 HOH HOH . E 5 HOH A 21 1321 1344 HOH HOH . E 5 HOH A 22 1322 1313 HOH HOH . E 5 HOH A 23 1323 1318 HOH HOH . E 5 HOH A 24 1324 1310 HOH HOH . E 5 HOH A 25 1325 1304 HOH HOH . E 5 HOH A 26 1326 1301 HOH HOH . E 5 HOH A 27 1327 1332 HOH HOH . E 5 HOH A 28 1328 1324 HOH HOH . E 5 HOH A 29 1329 1308 HOH HOH . E 5 HOH A 30 1330 1303 HOH HOH . E 5 HOH A 31 1331 1312 HOH HOH . E 5 HOH A 32 1332 1330 HOH HOH . E 5 HOH A 33 1333 1366 HOH HOH . E 5 HOH A 34 1334 1302 HOH HOH . E 5 HOH A 35 1335 1372 HOH HOH . E 5 HOH A 36 1336 1336 HOH HOH . E 5 HOH A 37 1337 1 HOH HOH . E 5 HOH A 38 1338 1314 HOH HOH . E 5 HOH A 39 1339 1368 HOH HOH . E 5 HOH A 40 1340 1319 HOH HOH . E 5 HOH A 41 1341 1325 HOH HOH . E 5 HOH A 42 1342 1317 HOH HOH . E 5 HOH A 43 1343 1359 HOH HOH . E 5 HOH A 44 1344 1315 HOH HOH . E 5 HOH A 45 1345 1367 HOH HOH . E 5 HOH A 46 1346 1306 HOH HOH . E 5 HOH A 47 1347 1373 HOH HOH . E 5 HOH A 48 1348 1307 HOH HOH . E 5 HOH A 49 1349 1329 HOH HOH . E 5 HOH A 50 1350 1337 HOH HOH . E 5 HOH A 51 1351 1320 HOH HOH . E 5 HOH A 52 1352 1321 HOH HOH . E 5 HOH A 53 1353 1362 HOH HOH . E 5 HOH A 54 1354 1326 HOH HOH . E 5 HOH A 55 1355 1349 HOH HOH . E 5 HOH A 56 1356 1323 HOH HOH . E 5 HOH A 57 1357 1370 HOH HOH . E 5 HOH A 58 1358 1305 HOH HOH . E 5 HOH A 59 1359 1339 HOH HOH . E 5 HOH A 60 1360 2 HOH HOH . E 5 HOH A 61 1361 1350 HOH HOH . E 5 HOH A 62 1362 1338 HOH HOH . E 5 HOH A 63 1363 1375 HOH HOH . E 5 HOH A 64 1364 1358 HOH HOH . E 5 HOH A 65 1365 1343 HOH HOH . E 5 HOH A 66 1366 1371 HOH HOH . E 5 HOH A 67 1367 1327 HOH HOH . E 5 HOH A 68 1368 1334 HOH HOH . E 5 HOH A 69 1369 1333 HOH HOH . E 5 HOH A 70 1370 1331 HOH HOH . E 5 HOH A 71 1371 1365 HOH HOH . E 5 HOH A 72 1372 1377 HOH HOH . E 5 HOH A 73 1373 1342 HOH HOH . E 5 HOH A 74 1374 1376 HOH HOH . E 5 HOH A 75 1375 1351 HOH HOH . E 5 HOH A 76 1376 1374 HOH HOH . E 5 HOH A 77 1377 1360 HOH HOH . E 5 HOH A 78 1378 1357 HOH HOH . E 5 HOH A 79 1379 1356 HOH HOH . E 5 HOH A 80 1380 1348 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . A . D 4 7.64 17.4 29.678 0.52 34.27 ? C1 EDO 1203 A 1 HETATM 2 O O1 EDO . A . D 4 6.46 16.923 30.316 0.52 34.41 ? O1 EDO 1203 A 1 HETATM 3 C C2 EDO . A . D 4 7.344 18.57 28.745 0.52 33.88 ? C2 EDO 1203 A 1 HETATM 4 O O2 EDO . A . D 4 6.529 19.518 29.421 0.52 35.86 ? O2 EDO 1203 A 1 HETATM 5 H H11 EDO . A . D 4 8.359 17.716 30.437 0.52 41.11 ? H11 EDO 1203 A 1 HETATM 6 H H12 EDO . A . D 4 8.095 16.588 29.106 0.52 41.11 ? H12 EDO 1203 A 1 HETATM 7 H HO1 EDO . A . D 4 6.684 16.183 30.898 0.52 41.28 ? HO1 EDO 1203 A 1 HETATM 8 H H21 EDO . A . D 4 8.278 19.041 28.433 0.52 40.64 ? H21 EDO 1203 A 1 HETATM 9 H H22 EDO . A . D 4 6.828 18.21 27.852 0.52 40.64 ? H22 EDO 1203 A 1 HETATM 10 H HO2 EDO . A . D 4 6.341 20.26 28.83 0.52 43.02 ? HO2 EDO 1203 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 10 #