data_6DML
#
_model_server_result.job_id            y46agI54vuAhP5sNkXJ-qg 
_model_server_result.datetime_utc      '2024-12-18 02:17:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dml 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    6DML 
#
_exptl.entry_id    6DML 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DML 
_cell.length_a            43.57 
_cell.length_b            48.85 
_cell.length_c            61.02 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DML 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 145 n n 
C1 C2 EDO sing 146 n n 
C1 H11 EDO sing 147 n n 
C1 H12 EDO sing 148 n n 
O1 HO1 EDO sing 149 n n 
C2 O2 EDO sing 150 n n 
C2 H21 EDO sing 151 n n 
C2 H22 EDO sing 152 n n 
O2 HO2 EDO sing 153 n n 
#
_atom_sites.entry_id                     6DML 
_atom_sites.fract_transf_matrix[1][1]    0.022952 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020471 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016388 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 201 1169 EDO EDO . 
C 2 EDO A 1 202 1170 EDO EDO . 
D 2 EDO A 1 203 1171 EDO EDO . 
E 3 9BM A 1 204 1172 9BM 9BM . 
F 4 HOH A 1 301 2068 HOH HOH . 
F 4 HOH A 2 302 2055 HOH HOH . 
F 4 HOH A 3 303 2022 HOH HOH . 
F 4 HOH A 4 304 2051 HOH HOH . 
F 4 HOH A 5 305 2188 HOH HOH . 
F 4 HOH A 6 306 2085 HOH HOH . 
F 4 HOH A 7 307 2110 HOH HOH . 
F 4 HOH A 8 308 2145 HOH HOH . 
F 4 HOH A 9 309 2152 HOH HOH . 
F 4 HOH A 10 310 2089 HOH HOH . 
F 4 HOH A 11 311 2042 HOH HOH . 
F 4 HOH A 12 312 2158 HOH HOH . 
F 4 HOH A 13 313 2097 HOH HOH . 
F 4 HOH A 14 314 2056 HOH HOH . 
F 4 HOH A 15 315 2139 HOH HOH . 
F 4 HOH A 16 316 2135 HOH HOH . 
F 4 HOH A 17 317 2020 HOH HOH . 
F 4 HOH A 18 318 2175 HOH HOH . 
F 4 HOH A 19 319 2041 HOH HOH . 
F 4 HOH A 20 320 2096 HOH HOH . 
F 4 HOH A 21 321 2084 HOH HOH . 
F 4 HOH A 22 322 2189 HOH HOH . 
F 4 HOH A 23 323 2012 HOH HOH . 
F 4 HOH A 24 324 2079 HOH HOH . 
F 4 HOH A 25 325 2021 HOH HOH . 
F 4 HOH A 26 326 2067 HOH HOH . 
F 4 HOH A 27 327 2024 HOH HOH . 
F 4 HOH A 28 328 2010 HOH HOH . 
F 4 HOH A 29 329 2007 HOH HOH . 
F 4 HOH A 30 330 2013 HOH HOH . 
F 4 HOH A 31 331 2102 HOH HOH . 
F 4 HOH A 32 332 2125 HOH HOH . 
F 4 HOH A 33 333 2002 HOH HOH . 
F 4 HOH A 34 334 2118 HOH HOH . 
F 4 HOH A 35 335 2120 HOH HOH . 
F 4 HOH A 36 336 2091 HOH HOH . 
F 4 HOH A 37 337 2111 HOH HOH . 
F 4 HOH A 38 338 2173 HOH HOH . 
F 4 HOH A 39 339 2043 HOH HOH . 
F 4 HOH A 40 340 2082 HOH HOH . 
F 4 HOH A 41 341 2063 HOH HOH . 
F 4 HOH A 42 342 2141 HOH HOH . 
F 4 HOH A 43 343 2170 HOH HOH . 
F 4 HOH A 44 344 2072 HOH HOH . 
F 4 HOH A 45 345 2127 HOH HOH . 
F 4 HOH A 46 346 2119 HOH HOH . 
F 4 HOH A 47 347 2048 HOH HOH . 
F 4 HOH A 48 348 2108 HOH HOH . 
F 4 HOH A 49 349 2059 HOH HOH . 
F 4 HOH A 50 350 2116 HOH HOH . 
F 4 HOH A 51 351 2178 HOH HOH . 
F 4 HOH A 52 352 2154 HOH HOH . 
F 4 HOH A 53 353 2157 HOH HOH . 
F 4 HOH A 54 354 2121 HOH HOH . 
F 4 HOH A 55 355 2131 HOH HOH . 
F 4 HOH A 56 356 2149 HOH HOH . 
F 4 HOH A 57 357 2172 HOH HOH . 
F 4 HOH A 58 358 2142 HOH HOH . 
F 4 HOH A 59 359 2109 HOH HOH . 
F 4 HOH A 60 360 2040 HOH HOH . 
F 4 HOH A 61 361 2162 HOH HOH . 
F 4 HOH A 62 362 2080 HOH HOH . 
F 4 HOH A 63 363 2081 HOH HOH . 
F 4 HOH A 64 364 2160 HOH HOH . 
F 4 HOH A 65 365 2164 HOH HOH . 
F 4 HOH A 66 366 2009 HOH HOH . 
F 4 HOH A 67 367 2037 HOH HOH . 
F 4 HOH A 68 368 2166 HOH HOH . 
F 4 HOH A 69 369 2006 HOH HOH . 
F 4 HOH A 70 370 2156 HOH HOH . 
F 4 HOH A 71 371 2169 HOH HOH . 
F 4 HOH A 72 372 2028 HOH HOH . 
F 4 HOH A 73 373 2181 HOH HOH . 
F 4 HOH A 74 374 2060 HOH HOH . 
F 4 HOH A 75 375 2069 HOH HOH . 
F 4 HOH A 76 376 2008 HOH HOH . 
F 4 HOH A 77 377 2114 HOH HOH . 
F 4 HOH A 78 378 2064 HOH HOH . 
F 4 HOH A 79 379 2071 HOH HOH . 
F 4 HOH A 80 380 2130 HOH HOH . 
F 4 HOH A 81 381 2090 HOH HOH . 
F 4 HOH A 82 382 2150 HOH HOH . 
F 4 HOH A 83 383 2128 HOH HOH . 
F 4 HOH A 84 384 2122 HOH HOH . 
F 4 HOH A 85 385 2017 HOH HOH . 
F 4 HOH A 86 386 2137 HOH HOH . 
F 4 HOH A 87 387 2023 HOH HOH . 
F 4 HOH A 88 388 2044 HOH HOH . 
F 4 HOH A 89 389 2155 HOH HOH . 
F 4 HOH A 90 390 2180 HOH HOH . 
F 4 HOH A 91 391 2092 HOH HOH . 
F 4 HOH A 92 392 2027 HOH HOH . 
F 4 HOH A 93 393 2019 HOH HOH . 
F 4 HOH A 94 394 2073 HOH HOH . 
F 4 HOH A 95 395 2029 HOH HOH . 
F 4 HOH A 96 396 2165 HOH HOH . 
F 4 HOH A 97 397 2143 HOH HOH . 
F 4 HOH A 98 398 2115 HOH HOH . 
F 4 HOH A 99 399 2003 HOH HOH . 
F 4 HOH A 100 400 2140 HOH HOH . 
F 4 HOH A 101 401 2107 HOH HOH . 
F 4 HOH A 102 402 2011 HOH HOH . 
F 4 HOH A 103 403 2039 HOH HOH . 
F 4 HOH A 104 404 2153 HOH HOH . 
F 4 HOH A 105 405 2018 HOH HOH . 
F 4 HOH A 106 406 2132 HOH HOH . 
F 4 HOH A 107 407 2049 HOH HOH . 
F 4 HOH A 108 408 2123 HOH HOH . 
F 4 HOH A 109 409 2025 HOH HOH . 
F 4 HOH A 110 410 2113 HOH HOH . 
F 4 HOH A 111 411 2124 HOH HOH . 
F 4 HOH A 112 412 2134 HOH HOH . 
F 4 HOH A 113 413 2183 HOH HOH . 
F 4 HOH A 114 414 2087 HOH HOH . 
F 4 HOH A 115 415 2171 HOH HOH . 
F 4 HOH A 116 416 2148 HOH HOH . 
F 4 HOH A 117 417 2147 HOH HOH . 
F 4 HOH A 118 418 2014 HOH HOH . 
F 4 HOH A 119 419 2133 HOH HOH . 
F 4 HOH A 120 420 2161 HOH HOH . 
F 4 HOH A 121 421 2112 HOH HOH . 
F 4 HOH A 122 422 2047 HOH HOH . 
F 4 HOH A 123 423 2126 HOH HOH . 
F 4 HOH A 124 424 2005 HOH HOH . 
F 4 HOH A 125 425 2129 HOH HOH . 
F 4 HOH A 126 426 2004 HOH HOH . 
F 4 HOH A 127 427 2070 HOH HOH . 
F 4 HOH A 128 428 2101 HOH HOH . 
F 4 HOH A 129 429 2167 HOH HOH . 
F 4 HOH A 130 430 2052 HOH HOH . 
F 4 HOH A 131 431 2074 HOH HOH . 
F 4 HOH A 132 432 2088 HOH HOH . 
F 4 HOH A 133 433 2179 HOH HOH . 
F 4 HOH A 134 434 2144 HOH HOH . 
F 4 HOH A 135 435 2065 HOH HOH . 
F 4 HOH A 136 436 2098 HOH HOH . 
F 4 HOH A 137 437 2151 HOH HOH . 
F 4 HOH A 138 438 2174 HOH HOH . 
F 4 HOH A 139 439 2177 HOH HOH . 
F 4 HOH A 140 440 2038 HOH HOH . 
F 4 HOH A 141 441 2190 HOH HOH . 
F 4 HOH A 142 442 2016 HOH HOH . 
F 4 HOH A 143 443 2015 HOH HOH . 
F 4 HOH A 144 444 2094 HOH HOH . 
F 4 HOH A 145 445 2159 HOH HOH . 
F 4 HOH A 146 446 2117 HOH HOH . 
F 4 HOH A 147 447 2136 HOH HOH . 
F 4 HOH A 148 448 2186 HOH HOH . 
F 4 HOH A 149 449 2036 HOH HOH . 
F 4 HOH A 150 450 2105 HOH HOH . 
F 4 HOH A 151 451 2176 HOH HOH . 
F 4 HOH A 152 452 2187 HOH HOH . 
F 4 HOH A 153 453 2184 HOH HOH . 
F 4 HOH A 154 454 2086 HOH HOH . 
F 4 HOH A 155 455 2103 HOH HOH . 
F 4 HOH A 156 456 2138 HOH HOH . 
F 4 HOH A 157 457 2099 HOH HOH . 
F 4 HOH A 158 458 2168 HOH HOH . 
F 4 HOH A 159 459 2146 HOH HOH . 
F 4 HOH A 160 460 2046 HOH HOH . 
F 4 HOH A 161 461 2031 HOH HOH . 
F 4 HOH A 162 462 2026 HOH HOH . 
F 4 HOH A 163 463 2034 HOH HOH . 
F 4 HOH A 164 464 2066 HOH HOH . 
F 4 HOH A 165 465 2185 HOH HOH . 
F 4 HOH A 166 466 2057 HOH HOH . 
F 4 HOH A 167 467 2061 HOH HOH . 
F 4 HOH A 168 468 2062 HOH HOH . 
F 4 HOH A 169 469 2077 HOH HOH . 
F 4 HOH A 170 470 2163 HOH HOH . 
F 4 HOH A 171 471 2053 HOH HOH . 
F 4 HOH A 172 472 2045 HOH HOH . 
F 4 HOH A 173 473 2030 HOH HOH . 
F 4 HOH A 174 474 2032 HOH HOH . 
F 4 HOH A 175 475 2078 HOH HOH . 
F 4 HOH A 176 476 2182 HOH HOH . 
F 4 HOH A 177 477 2033 HOH HOH . 
F 4 HOH A 178 478 2093 HOH HOH . 
F 4 HOH A 179 479 2076 HOH HOH . 
F 4 HOH A 180 480 2100 HOH HOH . 
F 4 HOH A 181 481 2104 HOH HOH . 
F 4 HOH A 182 482 2054 HOH HOH . 
F 4 HOH A 183 483 2001 HOH HOH . 
F 4 HOH A 184 484 2075 HOH HOH . 
F 4 HOH A 185 485 2095 HOH HOH . 
F 4 HOH A 186 486 2083 HOH HOH . 
F 4 HOH A 187 487 2035 HOH HOH . 
F 4 HOH A 188 488 2058 HOH HOH . 
F 4 HOH A 189 489 2050 HOH HOH . 
F 4 HOH A 190 490 2106 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . B 2 15.881 -0.278 22.184 1 58.35 ? C1 EDO 201 A 1 
HETATM 2 O O1 EDO . . . B 2 16.1 -1.234 21.142 1 59.02 ? O1 EDO 201 A 1 
HETATM 3 C C2 EDO . . . B 2 14.937 -0.868 23.232 1 58.27 ? C2 EDO 201 A 1 
HETATM 4 O O2 EDO . . . B 2 13.771 -1.431 22.608 1 57.74 ? O2 EDO 201 A 1 
HETATM 5 H H11 EDO . . . B 2 15.445 0.631 21.765 1 70.02 ? H11 EDO 201 A 1 
HETATM 6 H H12 EDO . . . B 2 16.833 -0.015 22.65 1 70.02 ? H12 EDO 201 A 1 
HETATM 7 H HO1 EDO . . . B 2 16.697 -0.859 20.481 1 70.83 ? HO1 EDO 201 A 1 
HETATM 8 H H21 EDO . . . B 2 14.635 -0.087 23.933 1 69.92 ? H21 EDO 201 A 1 
HETATM 9 H H22 EDO . . . B 2 15.458 -1.644 23.797 1 69.92 ? H22 EDO 201 A 1 
HETATM 10 H HO2 EDO . . . B 2 13.188 -1.798 23.287 1 69.29 ? HO2 EDO 201 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#