data_6DMN # _model_server_result.job_id Agv3Jix27NvX6pR9PSSUFQ _model_server_result.datetime_utc '2024-11-16 23:49:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dmn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 6DMN # _exptl.entry_id 6DMN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.93 _cell.angle_gamma 90 _cell.entry_id 6DMN _cell.length_a 81.465 _cell.length_b 37.681 _cell.length_c 62.022 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DMN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' U 4 B U 4 1_555 C P C 1 b C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 sing metalc ? metalc1 A OD2 ASP 17 A ASP 71 1_555 E CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc2 A OD1 ASP 17 A ASP 71 1_555 F CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc3 A OE1 GLU 55 A GLU 109 1_555 F CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc4 A OE2 GLU 55 A GLU 109 1_555 F CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.017 ? metalc ? metalc5 A OD1 ASP 78 A ASP 132 1_555 F CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc6 A OD2 ASP 78 A ASP 132 1_555 F CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc7 A OD1 ASP 138 A ASP 192 1_555 E CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc8 E CA CA . A CA 201 1_555 O O1 EDO . A EDO 211 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.456 ? metalc ? metalc9 E CA CA . A CA 201 1_555 R O HOH . A HOH 302 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.382 ? metalc ? metalc10 E CA CA . A CA 201 1_555 R O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc11 E CA CA . A CA 201 1_555 R O HOH . A HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc12 E CA CA . A CA 201 1_555 C OP1 C 1 b C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc13 F CA CA . A CA 202 1_555 R O HOH . A HOH 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc14 F CA CA . A CA 202 1_555 B O3' U 4 B U 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? metalc ? metalc15 F CA CA . A CA 202 1_555 C OP1 C 1 b C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc16 D O6 DG 5 C DG 5 1_555 P K K . C K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc17 P K K . C K 101 1_555 U O HOH . C HOH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.386 ? metalc ? metalc18 P K K . C K 101 1_555 U O HOH . C HOH 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? hydrog WATSON-CRICK hydrog1 B N1 A 1 B A 1 1_555 D N3 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N6 A 1 B A 1 1_555 D O4 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N3 C 2 B C 2 1_555 D N1 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N4 C 2 B C 2 1_555 D O6 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O2 C 2 B C 2 1_555 D N2 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 A 3 B A 3 1_555 D N3 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N6 A 3 B A 3 1_555 D O4 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N3 U 4 B U 4 1_555 D N1 DA 3 C DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O4 U 4 B U 4 1_555 D N6 DA 3 C DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C N3 C 1 b C 5 1_555 D N1 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N4 C 1 b C 5 1_555 D O6 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C O2 C 1 b C 5 1_555 D N2 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N1 G 2 b G 6 1_555 D N3 DC 1 C DC 1 1_555 ? A ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N1 G 2 b G 6 1_555 D N3 DC 1 C DC 1 1_555 ? B ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C N2 G 2 b G 6 1_555 D O2 DC 1 C DC 1 1_555 ? A ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C N2 G 2 b G 6 1_555 D O2 DC 1 C DC 1 1_555 ? B ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C O6 G 2 b G 6 1_555 D N4 DC 1 C DC 1 1_555 ? A ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C O6 G 2 b G 6 1_555 D N4 DC 1 C DC 1 1_555 ? B ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6DMN _atom_sites.fract_transf_matrix[1][1] 0.012275 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001275 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 CA A 1 201 201 CA CA . F 5 CA A 1 202 202 CA CA . G 6 IOD A 1 203 1 IOD IOD . H 6 IOD A 1 204 2 IOD IOD . I 6 IOD A 1 205 3 IOD IOD . J 6 IOD A 1 206 4 IOD IOD . K 7 GOL A 1 207 1 GOL GOL . L 8 EDO A 1 208 2 EDO EDO . M 8 EDO A 1 209 3 EDO EDO . N 8 EDO A 1 210 4 EDO EDO . O 8 EDO A 1 211 5 EDO EDO . P 9 K C 1 101 213 K K . Q 7 GOL C 1 102 6 GOL GOL . R 10 HOH A 1 301 102 HOH HOH . R 10 HOH A 2 302 88 HOH HOH . R 10 HOH A 3 303 8 HOH HOH . R 10 HOH A 4 304 53 HOH HOH . R 10 HOH A 5 305 51 HOH HOH . R 10 HOH A 6 306 158 HOH HOH . R 10 HOH A 7 307 114 HOH HOH . R 10 HOH A 8 308 87 HOH HOH . R 10 HOH A 9 309 133 HOH HOH . R 10 HOH A 10 310 150 HOH HOH . R 10 HOH A 11 311 32 HOH HOH . R 10 HOH A 12 312 16 HOH HOH . R 10 HOH A 13 313 155 HOH HOH . R 10 HOH A 14 314 33 HOH HOH . R 10 HOH A 15 315 141 HOH HOH . R 10 HOH A 16 316 131 HOH HOH . R 10 HOH A 17 317 76 HOH HOH . R 10 HOH A 18 318 159 HOH HOH . R 10 HOH A 19 319 47 HOH HOH . R 10 HOH A 20 320 34 HOH HOH . R 10 HOH A 21 321 99 HOH HOH . R 10 HOH A 22 322 127 HOH HOH . R 10 HOH A 23 323 18 HOH HOH . R 10 HOH A 24 324 135 HOH HOH . R 10 HOH A 25 325 13 HOH HOH . R 10 HOH A 26 326 156 HOH HOH . R 10 HOH A 27 327 86 HOH HOH . R 10 HOH A 28 328 25 HOH HOH . R 10 HOH A 29 329 116 HOH HOH . R 10 HOH A 30 330 5 HOH HOH . R 10 HOH A 31 331 39 HOH HOH . R 10 HOH A 32 332 62 HOH HOH . R 10 HOH A 33 333 48 HOH HOH . R 10 HOH A 34 334 115 HOH HOH . R 10 HOH A 35 335 106 HOH HOH . R 10 HOH A 36 336 121 HOH HOH . R 10 HOH A 37 337 161 HOH HOH . R 10 HOH A 38 338 157 HOH HOH . R 10 HOH A 39 339 31 HOH HOH . R 10 HOH A 40 340 61 HOH HOH . R 10 HOH A 41 341 1 HOH HOH . R 10 HOH A 42 342 78 HOH HOH . R 10 HOH A 43 343 92 HOH HOH . R 10 HOH A 44 344 28 HOH HOH . R 10 HOH A 45 345 142 HOH HOH . R 10 HOH A 46 346 11 HOH HOH . R 10 HOH A 47 347 19 HOH HOH . R 10 HOH A 48 348 84 HOH HOH . R 10 HOH A 49 349 58 HOH HOH . R 10 HOH A 50 350 89 HOH HOH . R 10 HOH A 51 351 104 HOH HOH . R 10 HOH A 52 352 123 HOH HOH . R 10 HOH A 53 353 40 HOH HOH . R 10 HOH A 54 354 74 HOH HOH . R 10 HOH A 55 355 60 HOH HOH . R 10 HOH A 56 356 101 HOH HOH . R 10 HOH A 57 357 50 HOH HOH . R 10 HOH A 58 358 37 HOH HOH . R 10 HOH A 59 359 153 HOH HOH . R 10 HOH A 60 360 97 HOH HOH . R 10 HOH A 61 361 7 HOH HOH . R 10 HOH A 62 362 66 HOH HOH . R 10 HOH A 63 363 125 HOH HOH . R 10 HOH A 64 364 72 HOH HOH . R 10 HOH A 65 365 166 HOH HOH . R 10 HOH A 66 366 113 HOH HOH . R 10 HOH A 67 367 6 HOH HOH . R 10 HOH A 68 368 96 HOH HOH . R 10 HOH A 69 369 23 HOH HOH . R 10 HOH A 70 370 42 HOH HOH . R 10 HOH A 71 371 105 HOH HOH . R 10 HOH A 72 372 22 HOH HOH . R 10 HOH A 73 373 108 HOH HOH . R 10 HOH A 74 374 3 HOH HOH . R 10 HOH A 75 375 77 HOH HOH . R 10 HOH A 76 376 146 HOH HOH . R 10 HOH A 77 377 41 HOH HOH . R 10 HOH A 78 378 154 HOH HOH . R 10 HOH A 79 379 94 HOH HOH . R 10 HOH A 80 380 134 HOH HOH . R 10 HOH A 81 381 120 HOH HOH . R 10 HOH A 82 382 36 HOH HOH . R 10 HOH A 83 383 46 HOH HOH . R 10 HOH A 84 384 24 HOH HOH . R 10 HOH A 85 385 129 HOH HOH . R 10 HOH A 86 386 45 HOH HOH . R 10 HOH A 87 387 26 HOH HOH . R 10 HOH A 88 388 43 HOH HOH . R 10 HOH A 89 389 2 HOH HOH . R 10 HOH A 90 390 52 HOH HOH . R 10 HOH A 91 391 82 HOH HOH . R 10 HOH A 92 392 93 HOH HOH . R 10 HOH A 93 393 20 HOH HOH . R 10 HOH A 94 394 80 HOH HOH . R 10 HOH A 95 395 59 HOH HOH . R 10 HOH A 96 396 164 HOH HOH . R 10 HOH A 97 397 57 HOH HOH . R 10 HOH A 98 398 168 HOH HOH . R 10 HOH A 99 399 132 HOH HOH . R 10 HOH A 100 400 138 HOH HOH . R 10 HOH A 101 401 163 HOH HOH . R 10 HOH A 102 402 117 HOH HOH . R 10 HOH A 103 403 56 HOH HOH . R 10 HOH A 104 404 152 HOH HOH . R 10 HOH A 105 405 130 HOH HOH . R 10 HOH A 106 406 68 HOH HOH . R 10 HOH A 107 407 15 HOH HOH . R 10 HOH A 108 408 12 HOH HOH . R 10 HOH A 109 409 124 HOH HOH . R 10 HOH A 110 410 100 HOH HOH . R 10 HOH A 111 411 73 HOH HOH . R 10 HOH A 112 412 122 HOH HOH . R 10 HOH A 113 413 148 HOH HOH . R 10 HOH A 114 414 165 HOH HOH . R 10 HOH A 115 415 126 HOH HOH . R 10 HOH A 116 416 79 HOH HOH . R 10 HOH A 117 417 21 HOH HOH . R 10 HOH A 118 418 149 HOH HOH . R 10 HOH A 119 419 110 HOH HOH . R 10 HOH A 120 420 90 HOH HOH . R 10 HOH A 121 421 119 HOH HOH . R 10 HOH A 122 422 81 HOH HOH . R 10 HOH A 123 423 85 HOH HOH . R 10 HOH A 124 424 91 HOH HOH . R 10 HOH A 125 425 162 HOH HOH . R 10 HOH A 126 426 38 HOH HOH . R 10 HOH A 127 427 63 HOH HOH . R 10 HOH A 128 428 44 HOH HOH . R 10 HOH A 129 429 17 HOH HOH . R 10 HOH A 130 430 54 HOH HOH . R 10 HOH A 131 431 95 HOH HOH . R 10 HOH A 132 432 103 HOH HOH . R 10 HOH A 133 433 64 HOH HOH . R 10 HOH A 134 434 35 HOH HOH . R 10 HOH A 135 435 128 HOH HOH . R 10 HOH A 136 436 27 HOH HOH . R 10 HOH A 137 437 167 HOH HOH . R 10 HOH A 138 438 65 HOH HOH . R 10 HOH A 139 439 67 HOH HOH . S 10 HOH B 1 101 107 HOH HOH . S 10 HOH B 2 102 112 HOH HOH . S 10 HOH B 3 103 14 HOH HOH . S 10 HOH B 4 104 70 HOH HOH . S 10 HOH B 5 105 71 HOH HOH . T 10 HOH b 1 101 170 HOH HOH . T 10 HOH b 2 102 140 HOH HOH . T 10 HOH b 3 103 145 HOH HOH . T 10 HOH b 4 104 169 HOH HOH . T 10 HOH b 5 105 151 HOH HOH . T 10 HOH b 6 106 136 HOH HOH . U 10 HOH C 1 201 4 HOH HOH . U 10 HOH C 2 202 143 HOH HOH . U 10 HOH C 3 203 98 HOH HOH . U 10 HOH C 4 204 147 HOH HOH . U 10 HOH C 5 205 75 HOH HOH . U 10 HOH C 6 206 137 HOH HOH . U 10 HOH C 7 207 9 HOH HOH . U 10 HOH C 8 208 160 HOH HOH . U 10 HOH C 9 209 111 HOH HOH . U 10 HOH C 10 210 29 HOH HOH . U 10 HOH C 11 211 55 HOH HOH . U 10 HOH C 12 212 30 HOH HOH . U 10 HOH C 13 213 49 HOH HOH . U 10 HOH C 14 214 10 HOH HOH . U 10 HOH C 15 215 118 HOH HOH . U 10 HOH C 16 216 69 HOH HOH . U 10 HOH C 17 217 144 HOH HOH . U 10 HOH C 18 218 109 HOH HOH . U 10 HOH C 19 219 139 HOH HOH . U 10 HOH C 20 220 83 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 24.117 _atom_site.Cartn_y -6.778 _atom_site.Cartn_z 10.789 _atom_site.occupancy 0.75 _atom_site.B_iso_or_equiv 17.74 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #