data_6DMV # _model_server_result.job_id V0W_lzQ6iPDdaEUnv2v6_g _model_server_result.datetime_utc '2024-11-16 23:31:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dmv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":205}' # _entry.id 6DMV # _exptl.entry_id 6DMV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.31 _cell.angle_gamma 90 _cell.entry_id 6DMV _cell.length_a 81.422 _cell.length_b 37.803 _cell.length_c 61.986 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DMV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 H N N ? 7 I N N ? 7 J N N ? 7 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' U 4 B U 4 1_555 C P C 1 b C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 sing metalc ? metalc1 A OD2 ASP 17 A ASP 71 1_555 E MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc2 A OD1 ASP 17 A ASP 71 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc3 A OE1 GLU 55 A GLU 109 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc4 A OD1 ASP 78 A ASP 132 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc5 A OD2 ASP 78 A ASP 132 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.873 ? metalc ? metalc6 A OD1 ASP 138 A ASP 192 1_555 E MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc7 A OD1 ASP 138 A ASP 192 1_555 G K K . A K 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.262 ? metalc ? metalc8 A O ARG 141 A ARG 195 1_555 G K K . A K 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.867 ? metalc ? metalc9 E MG MG . A MG 201 1_555 S O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc10 E MG MG . A MG 201 1_555 S O HOH . A HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc11 E MG MG . A MG 201 1_555 S O HOH . A HOH 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc12 E MG MG . A MG 201 1_555 C OP1 C 1 b C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc13 F MG MG . A MG 202 1_555 B O3' U 4 B U 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc14 F MG MG . A MG 202 1_555 C OP1 C 1 b C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc15 G K K . A K 203 1_555 S O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc16 G K K . A K 203 1_555 S O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc17 G K K . A K 203 1_555 S O HOH . A HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.127 ? metalc ? metalc18 G K K . A K 203 1_555 C OP2 G 2 b G 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc19 T O HOH . B HOH 109 1_555 R K K . C K 101 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.996 ? metalc ? metalc20 D O4 DT 4 C DT 4 1_555 R K K . C K 101 1_555 ? ? ? ? A ? ? ? ? ? ? ? 3.158 ? metalc ? metalc21 D O6 DG 5 C DG 5 1_555 R K K . C K 101 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.605 ? metalc ? metalc22 R K K . C K 101 1_555 V O HOH . C HOH 206 1_555 ? A ? ? ? ? ? ? ? ? ? ? 3.143 ? hydrog WATSON-CRICK hydrog1 B N1 A 1 B A 1 1_555 D N3 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N6 A 1 B A 1 1_555 D O4 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N3 C 2 B C 2 1_555 D N1 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N4 C 2 B C 2 1_555 D O6 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O2 C 2 B C 2 1_555 D N2 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 A 3 B A 3 1_555 D N3 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N6 A 3 B A 3 1_555 D O4 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N3 U 4 B U 4 1_555 D N1 DA 3 C DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O4 U 4 B U 4 1_555 D N6 DA 3 C DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C N3 C 1 b C 5 1_555 D N1 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N4 C 1 b C 5 1_555 D O6 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C O2 C 1 b C 5 1_555 D N2 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N1 G 2 b G 6 1_555 D N3 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N2 G 2 b G 6 1_555 D O2 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C O6 G 2 b G 6 1_555 D N4 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6DMV _atom_sites.fract_transf_matrix[1][1] 0.012282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001359 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016231 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 MG A 1 201 201 MG MG . F 5 MG A 1 202 202 MG MG . G 6 K A 1 203 211 K K . H 7 IOD A 1 204 1 IOD IOD . I 7 IOD A 1 205 2 IOD IOD . J 7 IOD A 1 206 3 IOD IOD . K 7 IOD A 1 207 4 IOD IOD . L 8 GOL A 1 208 1 GOL GOL . M 8 GOL A 1 209 2 GOL GOL . N 9 EDO A 1 210 3 EDO EDO . O 9 EDO A 1 211 4 EDO EDO . P 8 GOL A 1 212 5 GOL GOL . Q 8 GOL A 1 213 6 GOL GOL . R 6 K C 1 101 213 K K . S 10 HOH A 1 301 193 HOH HOH . S 10 HOH A 2 302 49 HOH HOH . S 10 HOH A 3 303 6 HOH HOH . S 10 HOH A 4 304 187 HOH HOH . S 10 HOH A 5 305 202 HOH HOH . S 10 HOH A 6 306 199 HOH HOH . S 10 HOH A 7 307 138 HOH HOH . S 10 HOH A 8 308 105 HOH HOH . S 10 HOH A 9 309 107 HOH HOH . S 10 HOH A 10 310 117 HOH HOH . S 10 HOH A 11 311 97 HOH HOH . S 10 HOH A 12 312 88 HOH HOH . S 10 HOH A 13 313 20 HOH HOH . S 10 HOH A 14 314 169 HOH HOH . S 10 HOH A 15 315 130 HOH HOH . S 10 HOH A 16 316 174 HOH HOH . S 10 HOH A 17 317 81 HOH HOH . S 10 HOH A 18 318 45 HOH HOH . S 10 HOH A 19 319 197 HOH HOH . S 10 HOH A 20 320 167 HOH HOH . S 10 HOH A 21 321 60 HOH HOH . S 10 HOH A 22 322 56 HOH HOH . S 10 HOH A 23 323 156 HOH HOH . S 10 HOH A 24 324 168 HOH HOH . S 10 HOH A 25 325 57 HOH HOH . S 10 HOH A 26 326 161 HOH HOH . S 10 HOH A 27 327 126 HOH HOH . S 10 HOH A 28 328 54 HOH HOH . S 10 HOH A 29 329 141 HOH HOH . S 10 HOH A 30 330 14 HOH HOH . S 10 HOH A 31 331 157 HOH HOH . S 10 HOH A 32 332 21 HOH HOH . S 10 HOH A 33 333 36 HOH HOH . S 10 HOH A 34 334 154 HOH HOH . S 10 HOH A 35 335 201 HOH HOH . S 10 HOH A 36 336 2 HOH HOH . S 10 HOH A 37 337 143 HOH HOH . S 10 HOH A 38 338 69 HOH HOH . S 10 HOH A 39 339 120 HOH HOH . S 10 HOH A 40 340 129 HOH HOH . S 10 HOH A 41 341 34 HOH HOH . S 10 HOH A 42 342 22 HOH HOH . S 10 HOH A 43 343 132 HOH HOH . S 10 HOH A 44 344 44 HOH HOH . S 10 HOH A 45 345 59 HOH HOH . S 10 HOH A 46 346 62 HOH HOH . S 10 HOH A 47 347 192 HOH HOH . S 10 HOH A 48 348 166 HOH HOH . S 10 HOH A 49 349 8 HOH HOH . S 10 HOH A 50 350 77 HOH HOH . S 10 HOH A 51 351 84 HOH HOH . S 10 HOH A 52 352 47 HOH HOH . S 10 HOH A 53 353 53 HOH HOH . S 10 HOH A 54 354 28 HOH HOH . S 10 HOH A 55 355 35 HOH HOH . S 10 HOH A 56 356 64 HOH HOH . S 10 HOH A 57 357 70 HOH HOH . S 10 HOH A 58 358 135 HOH HOH . S 10 HOH A 59 359 186 HOH HOH . S 10 HOH A 60 360 90 HOH HOH . S 10 HOH A 61 361 100 HOH HOH . S 10 HOH A 62 362 76 HOH HOH . S 10 HOH A 63 363 182 HOH HOH . S 10 HOH A 64 364 26 HOH HOH . S 10 HOH A 65 365 128 HOH HOH . S 10 HOH A 66 366 106 HOH HOH . S 10 HOH A 67 367 50 HOH HOH . S 10 HOH A 68 368 146 HOH HOH . S 10 HOH A 69 369 27 HOH HOH . S 10 HOH A 70 370 42 HOH HOH . S 10 HOH A 71 371 95 HOH HOH . S 10 HOH A 72 372 85 HOH HOH . S 10 HOH A 73 373 4 HOH HOH . S 10 HOH A 74 374 160 HOH HOH . S 10 HOH A 75 375 195 HOH HOH . S 10 HOH A 76 376 9 HOH HOH . S 10 HOH A 77 377 23 HOH HOH . S 10 HOH A 78 378 1 HOH HOH . S 10 HOH A 79 379 155 HOH HOH . S 10 HOH A 80 380 61 HOH HOH . S 10 HOH A 81 381 72 HOH HOH . S 10 HOH A 82 382 7 HOH HOH . S 10 HOH A 83 383 104 HOH HOH . S 10 HOH A 84 384 46 HOH HOH . S 10 HOH A 85 385 162 HOH HOH . S 10 HOH A 86 386 124 HOH HOH . S 10 HOH A 87 387 112 HOH HOH . S 10 HOH A 88 388 93 HOH HOH . S 10 HOH A 89 389 52 HOH HOH . S 10 HOH A 90 390 180 HOH HOH . S 10 HOH A 91 391 172 HOH HOH . S 10 HOH A 92 392 151 HOH HOH . S 10 HOH A 93 393 153 HOH HOH . S 10 HOH A 94 394 86 HOH HOH . S 10 HOH A 95 395 51 HOH HOH . S 10 HOH A 96 396 158 HOH HOH . S 10 HOH A 97 397 122 HOH HOH . S 10 HOH A 98 398 139 HOH HOH . S 10 HOH A 99 399 198 HOH HOH . S 10 HOH A 100 400 127 HOH HOH . S 10 HOH A 101 401 145 HOH HOH . S 10 HOH A 102 402 91 HOH HOH . S 10 HOH A 103 403 16 HOH HOH . S 10 HOH A 104 404 55 HOH HOH . S 10 HOH A 105 405 181 HOH HOH . S 10 HOH A 106 406 185 HOH HOH . S 10 HOH A 107 407 66 HOH HOH . S 10 HOH A 108 408 189 HOH HOH . S 10 HOH A 109 409 108 HOH HOH . S 10 HOH A 110 410 159 HOH HOH . S 10 HOH A 111 411 39 HOH HOH . S 10 HOH A 112 412 82 HOH HOH . S 10 HOH A 113 413 203 HOH HOH . S 10 HOH A 114 414 171 HOH HOH . S 10 HOH A 115 415 89 HOH HOH . S 10 HOH A 116 416 92 HOH HOH . S 10 HOH A 117 417 190 HOH HOH . S 10 HOH A 118 418 119 HOH HOH . S 10 HOH A 119 419 148 HOH HOH . S 10 HOH A 120 420 176 HOH HOH . S 10 HOH A 121 421 121 HOH HOH . S 10 HOH A 122 422 102 HOH HOH . S 10 HOH A 123 423 134 HOH HOH . S 10 HOH A 124 424 68 HOH HOH . S 10 HOH A 125 425 152 HOH HOH . S 10 HOH A 126 426 137 HOH HOH . S 10 HOH A 127 427 87 HOH HOH . S 10 HOH A 128 428 101 HOH HOH . S 10 HOH A 129 429 73 HOH HOH . S 10 HOH A 130 430 136 HOH HOH . S 10 HOH A 131 431 179 HOH HOH . S 10 HOH A 132 432 43 HOH HOH . S 10 HOH A 133 433 18 HOH HOH . S 10 HOH A 134 434 125 HOH HOH . S 10 HOH A 135 435 12 HOH HOH . S 10 HOH A 136 436 123 HOH HOH . S 10 HOH A 137 437 75 HOH HOH . S 10 HOH A 138 438 74 HOH HOH . S 10 HOH A 139 439 29 HOH HOH . S 10 HOH A 140 440 40 HOH HOH . S 10 HOH A 141 441 144 HOH HOH . S 10 HOH A 142 442 31 HOH HOH . S 10 HOH A 143 443 165 HOH HOH . S 10 HOH A 144 444 99 HOH HOH . S 10 HOH A 145 445 200 HOH HOH . T 10 HOH B 1 101 109 HOH HOH . T 10 HOH B 2 102 133 HOH HOH . T 10 HOH B 3 103 15 HOH HOH . T 10 HOH B 4 104 147 HOH HOH . T 10 HOH B 5 105 79 HOH HOH . T 10 HOH B 6 106 67 HOH HOH . T 10 HOH B 7 107 150 HOH HOH . T 10 HOH B 8 108 80 HOH HOH . T 10 HOH B 9 109 38 HOH HOH . U 10 HOH b 1 101 111 HOH HOH . U 10 HOH b 2 102 149 HOH HOH . U 10 HOH b 3 103 115 HOH HOH . U 10 HOH b 4 104 184 HOH HOH . U 10 HOH b 5 105 183 HOH HOH . U 10 HOH b 6 106 96 HOH HOH . V 10 HOH C 1 201 11 HOH HOH . V 10 HOH C 2 202 10 HOH HOH . V 10 HOH C 3 203 142 HOH HOH . V 10 HOH C 4 204 110 HOH HOH . V 10 HOH C 5 205 113 HOH HOH . V 10 HOH C 6 206 196 HOH HOH . V 10 HOH C 7 207 30 HOH HOH . V 10 HOH C 8 208 114 HOH HOH . V 10 HOH C 9 209 191 HOH HOH . V 10 HOH C 10 210 19 HOH HOH . V 10 HOH C 11 211 33 HOH HOH . V 10 HOH C 12 212 65 HOH HOH . V 10 HOH C 13 213 58 HOH HOH . V 10 HOH C 14 214 78 HOH HOH . V 10 HOH C 15 215 94 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 7 _atom_site.Cartn_x 30.366 _atom_site.Cartn_y 7.307 _atom_site.Cartn_z 12.891 _atom_site.occupancy 0.4 _atom_site.B_iso_or_equiv 39.44 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 205 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #