data_6DNA # _model_server_result.job_id -4D5wh9G84-9SnlSvt-bOQ _model_server_result.datetime_utc '2024-11-16 12:42:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dna # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 6DNA # _exptl.entry_id 6DNA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.98 _cell.angle_gamma 90 _cell.entry_id 6DNA _cell.length_a 257.7 _cell.length_b 148.626 _cell.length_c 83.183 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DNA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,H 1 1 B,I,J,P 2 1 C,K,Q 3 1 D,L,M 4 1 E,N,R 5 1 F,O,S 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 L N N # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 237 n n O1 HO1 PG4 sing 238 n n C1 C2 PG4 sing 239 n n C1 H11 PG4 sing 240 n n C1 H12 PG4 sing 241 n n C2 O2 PG4 sing 242 n n C2 H21 PG4 sing 243 n n C2 H22 PG4 sing 244 n n O2 C3 PG4 sing 245 n n C3 C4 PG4 sing 246 n n C3 H31 PG4 sing 247 n n C3 H32 PG4 sing 248 n n C4 O3 PG4 sing 249 n n C4 H41 PG4 sing 250 n n C4 H42 PG4 sing 251 n n O3 C5 PG4 sing 252 n n C5 C6 PG4 sing 253 n n C5 H51 PG4 sing 254 n n C5 H52 PG4 sing 255 n n C6 O4 PG4 sing 256 n n C6 H61 PG4 sing 257 n n C6 H62 PG4 sing 258 n n O4 C7 PG4 sing 259 n n C7 C8 PG4 sing 260 n n C7 H71 PG4 sing 261 n n C7 H72 PG4 sing 262 n n C8 O5 PG4 sing 263 n n C8 H81 PG4 sing 264 n n C8 H82 PG4 sing 265 n n O5 HO5 PG4 sing 266 n n # _atom_sites.entry_id 6DNA _atom_sites.fract_transf_matrix[1][1] 0.00388 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 PG4 A 1 501 3 PG4 PG4 . H 3 PLP A 1 502 2 PLP PLP . I 2 PG4 B 1 501 1 PG4 PG4 . J 3 PLP B 1 502 1 PLP PLP . K 3 PLP C 1 501 3 PLP PLP . L 2 PG4 D 1 501 2 PG4 PG4 . M 3 PLP D 1 502 4 PLP PLP . N 3 PLP E 1 501 5 PLP PLP . O 3 PLP F 1 501 6 PLP PLP . P 4 HOH B 1 601 4 HOH HOH . Q 4 HOH C 1 601 5 HOH HOH . Q 4 HOH C 2 602 1 HOH HOH . Q 4 HOH C 3 603 9 HOH HOH . R 4 HOH E 1 601 6 HOH HOH . R 4 HOH E 2 602 2 HOH HOH . R 4 HOH E 3 603 7 HOH HOH . S 4 HOH F 1 601 3 HOH HOH . S 4 HOH F 2 602 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . G 2 -72.811 -76.944 20.574 1 109.69 ? O1 PG4 501 A 1 HETATM 2 C C1 PG4 . . . G 2 -72.338 -75.595 20.732 1 110.57 ? C1 PG4 501 A 1 HETATM 3 C C2 PG4 . . . G 2 -72.798 -74.724 19.562 1 115.92 ? C2 PG4 501 A 1 HETATM 4 O O2 PG4 . . . G 2 -72.148 -73.441 19.604 1 123.56 ? O2 PG4 501 A 1 HETATM 5 C C3 PG4 . . . G 2 -71.532 -72.995 18.376 1 111.99 ? C3 PG4 501 A 1 HETATM 6 C C4 PG4 . . . G 2 -70.66 -71.762 18.627 1 99.02 ? C4 PG4 501 A 1 HETATM 7 O O3 PG4 . . . G 2 -70.723 -70.847 17.537 1 96.52 ? O3 PG4 501 A 1 HETATM 8 C C5 PG4 . . . G 2 -69.703 -71.045 16.547 1 102.69 ? C5 PG4 501 A 1 HETATM 9 C C6 PG4 . . . G 2 -70.008 -70.229 15.275 1 101.91 ? C6 PG4 501 A 1 HETATM 10 O O4 PG4 . . . G 2 -69.422 -70.787 14.085 1 94.22 ? O4 PG4 501 A 1 HETATM 11 C C7 PG4 . . . G 2 -70.323 -71.588 13.302 1 87.57 ? C7 PG4 501 A 1 HETATM 12 C C8 PG4 . . . G 2 -70.467 -72.95 13.985 1 90.67 ? C8 PG4 501 A 1 HETATM 13 O O5 PG4 . . . G 2 -71.04 -73.918 13.099 1 96.2 ? O5 PG4 501 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #