data_6DNE
#
_model_server_result.job_id            YdXTKJSWVYxslGebGvQqQg 
_model_server_result.datetime_utc      '2024-10-19 03:49:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dne 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    6DNE 
#
_exptl.entry_id    6DNE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              913.937 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N,N'-[ethane-1,2-diylbis(oxyethane-2,1-diyl)]bis{2-[(6S)-4-(4-chlorophenyl)-2,3,9-trimethyl-6H-thieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-6-yl]acetamide}" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6DNE 
_cell.length_a            87.54 
_cell.length_b            87.54 
_cell.length_c            172.3 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DNE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C44 H46 Cl2 N10 O4 S2' 
_chem_comp.formula_weight    913.937 
_chem_comp.id                H1V 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N,N'-[ethane-1,2-diylbis(oxyethane-2,1-diyl)]bis{2-[(6S)-4-(4-chlorophenyl)-2,3,9-trimethyl-6H-thieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-6-yl]acetamide}" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL C34 H1V sing 129 n n 
C34 C33 H1V doub 130 n y 
C34 C35 H1V sing 131 n y 
C33 C32 H1V sing 132 n y 
C35 C36 H1V doub 133 n y 
C27 C26 H1V sing 134 n n 
C32 C31 H1V doub 135 n y 
C36 C31 H1V sing 136 n y 
C31 C21 H1V sing 137 n n 
C26 C24 H1V doub 138 n y 
C26 C22 H1V sing 139 n y 
C25 C24 H1V sing 140 n n 
C24 S1 H1V sing 141 n y 
C21 C22 H1V sing 142 n n 
C21 N5 H1V doub 143 n n 
C22 C23 H1V doub 144 n y 
N5 C20 H1V sing 145 n n 
C17 C16 H1V sing 146 n n 
C17 N4 H1V sing 147 n n 
C C1 H1V sing 148 n n 
S1 C23 H1V sing 149 n y 
O3 C18 H1V doub 150 n n 
C23 N6 H1V sing 151 n n 
C16 O2 H1V sing 152 n n 
S C1 H1V sing 153 n y 
S C5 H1V sing 154 n y 
C18 N4 H1V sing 155 n n 
C18 C19 H1V sing 156 n n 
C20 C30 H1V sing 157 n n 
C20 C19 H1V sing 158 n n 
C1 C2 H1V doub 159 n y 
N6 C30 H1V sing 160 n y 
N6 C28 H1V sing 161 n y 
C30 N8 H1V doub 162 n y 
O2 C15 H1V sing 163 n n 
C7 C6 H1V sing 164 n n 
C29 C28 H1V sing 165 n n 
C5 N H1V sing 166 n n 
C5 C4 H1V doub 167 n y 
C28 N7 H1V doub 168 n y 
C6 N H1V sing 169 n y 
C6 N1 H1V doub 170 n y 
N C8 H1V sing 171 n y 
C2 C4 H1V sing 172 n y 
C2 C3 H1V sing 173 n n 
N1 N2 H1V sing 174 n y 
C8 C9 H1V sing 175 n n 
C8 N2 H1V doub 176 n y 
C15 C14 H1V sing 177 n n 
C9 C10 H1V sing 178 n n 
C9 N9 H1V sing 179 n n 
N8 N7 H1V sing 180 n y 
C10 C11 H1V sing 181 n n 
C4 C37 H1V sing 182 n n 
N3 C11 H1V sing 183 n n 
N3 C12 H1V sing 184 n n 
O1 C14 H1V sing 185 n n 
O1 C13 H1V sing 186 n n 
C11 O H1V doub 187 n n 
N9 C37 H1V doub 188 n n 
C37 C38 H1V sing 189 n n 
C12 C13 H1V sing 190 n n 
C38 C43 H1V doub 191 n y 
C38 C39 H1V sing 192 n y 
C43 C42 H1V sing 193 n y 
C39 C40 H1V doub 194 n y 
C42 C41 H1V doub 195 n y 
C40 C41 H1V sing 196 n y 
C41 CL1 H1V sing 197 n n 
C H1 H1V sing 198 n n 
C H2 H1V sing 199 n n 
C H3 H1V sing 200 n n 
C10 H4 H1V sing 201 n n 
C10 H5 H1V sing 202 n n 
C12 H6 H1V sing 203 n n 
C12 H7 H1V sing 204 n n 
C13 H8 H1V sing 205 n n 
C13 H9 H1V sing 206 n n 
C14 H10 H1V sing 207 n n 
C14 H11 H1V sing 208 n n 
C15 H12 H1V sing 209 n n 
C15 H13 H1V sing 210 n n 
C16 H14 H1V sing 211 n n 
C16 H15 H1V sing 212 n n 
C17 H16 H1V sing 213 n n 
C17 H17 H1V sing 214 n n 
C19 H18 H1V sing 215 n n 
C19 H19 H1V sing 216 n n 
C20 H20 H1V sing 217 n n 
C25 H21 H1V sing 218 n n 
C25 H22 H1V sing 219 n n 
C25 H23 H1V sing 220 n n 
C27 H24 H1V sing 221 n n 
C27 H25 H1V sing 222 n n 
C27 H26 H1V sing 223 n n 
C29 H27 H1V sing 224 n n 
C29 H28 H1V sing 225 n n 
C29 H29 H1V sing 226 n n 
C3 H30 H1V sing 227 n n 
C3 H31 H1V sing 228 n n 
C3 H32 H1V sing 229 n n 
C32 H33 H1V sing 230 n n 
C33 H34 H1V sing 231 n n 
C35 H35 H1V sing 232 n n 
C36 H36 H1V sing 233 n n 
C39 H37 H1V sing 234 n n 
C40 H38 H1V sing 235 n n 
C42 H39 H1V sing 236 n n 
C43 H40 H1V sing 237 n n 
C7 H41 H1V sing 238 n n 
C7 H42 H1V sing 239 n n 
C7 H43 H1V sing 240 n n 
C9 H44 H1V sing 241 n n 
N3 H45 H1V sing 242 n n 
N4 H46 H1V sing 243 n n 
#
_atom_sites.entry_id                     6DNE 
_atom_sites.fract_transf_matrix[1][1]    0.011423 
_atom_sites.fract_transf_matrix[1][2]    0.006595 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013191 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005804 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 H1V A 1 501 1 H1V CF0 . 
D 3 HOH A 1 601 1 HOH HOH . 
D 3 HOH A 2 602 4 HOH HOH . 
D 3 HOH A 3 603 2 HOH HOH . 
D 3 HOH A 4 604 3 HOH HOH . 
D 3 HOH A 5 605 6 HOH HOH . 
E 3 HOH B 1 501 8 HOH HOH . 
E 3 HOH B 2 502 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 H1V . . . C 2 -35.683 14.889 -6.477 1 51.09 ? C1 H1V 501 A 1 
HETATM 2 N N H1V . . . C 2 -35.266 11.184 -5.34 1 53.85 ? N H1V 501 A 1 
HETATM 3 C C H1V . . . C 2 -36.209 15.968 -7.387 1 61.4 ? C H1V 501 A 1 
HETATM 4 O O H1V . . . C 2 -30.758 10.831 -2.528 1 70.34 ? O H1V 501 A 1 
HETATM 5 C C10 H1V . . . C 2 -31.679 10.419 -4.671 1 45.31 ? C10 H1V 501 A 1 
HETATM 6 C C11 H1V . . . C 2 -30.629 10.972 -3.734 1 52.29 ? C11 H1V 501 A 1 
HETATM 7 C C12 H1V . . . C 2 -28.429 11.921 -3.45 1 36.86 ? C12 H1V 501 A 1 
HETATM 8 C C13 H1V . . . C 2 -27.628 10.701 -3.002 1 27.84 ? C13 H1V 501 A 1 
HETATM 9 C C14 H1V . . . C 2 -25.845 9.252 -3.588 1 28.16 ? C14 H1V 501 A 1 
HETATM 10 C C15 H1V . . . C 2 -25.482 8.37 -4.777 1 29.63 ? C15 H1V 501 A 1 
HETATM 11 C C16 H1V . . . C 2 -24.242 8.269 -6.775 1 43.32 ? C16 H1V 501 A 1 
HETATM 12 C C17 H1V . . . C 2 -23.025 8.866 -7.472 1 42.99 ? C17 H1V 501 A 1 
HETATM 13 C C18 H1V . . . C 2 -20.909 9.74 -6.676 1 39.57 ? C18 H1V 501 A 1 
HETATM 14 C C19 H1V . . . C 2 -19.606 9.461 -5.964 1 44.75 ? C19 H1V 501 A 1 
HETATM 15 C C2 H1V . . . C 2 -34.811 14.913 -5.258 1 51.39 ? C2 H1V 501 A 1 
HETATM 16 C C20 H1V . . . C 2 -18.48 10.217 -6.659 1 45.83 ? C20 H1V 501 A 1 
HETATM 17 C C21 H1V . . . C 2 -17.579 10.062 -8.849 1 29.17 ? C21 H1V 501 A 1 
HETATM 18 C C22 H1V . . . C 2 -16.77 11.275 -8.568 1 26.78 ? C22 H1V 501 A 1 
HETATM 19 C C23 H1V . . . C 2 -16.007 11.447 -7.304 1 34.37 ? C23 H1V 501 A 1 
HETATM 20 C C24 H1V . . . C 2 -15.706 13.471 -8.868 1 29.82 ? C24 H1V 501 A 1 
HETATM 21 C C25 H1V . . . C 2 -15.197 14.812 -9.326 1 19.47 ? C25 H1V 501 A 1 
HETATM 22 C C26 H1V . . . C 2 -16.598 12.446 -9.501 1 35.16 ? C26 H1V 501 A 1 
HETATM 23 C C27 H1V . . . C 2 -17.207 12.61 -10.867 1 42.42 ? C27 H1V 501 A 1 
HETATM 24 C C28 H1V . . . C 2 -14.994 10.148 -5.561 1 29.45 ? C28 H1V 501 A 1 
HETATM 25 C C29 H1V . . . C 2 -13.549 10.569 -5.623 1 22.53 ? C29 H1V 501 A 1 
HETATM 26 C C3 H1V . . . C 2 -34.248 16.178 -4.67 1 52.6 ? C3 H1V 501 A 1 
HETATM 27 C C30 H1V . . . C 2 -17.188 9.977 -5.987 1 32.74 ? C30 H1V 501 A 1 
HETATM 28 C C31 H1V . . . C 2 -17.442 9.382 -10.177 1 32.52 ? C31 H1V 501 A 1 
HETATM 29 C C32 H1V . . . C 2 -18.509 8.715 -10.768 1 36.02 ? C32 H1V 501 A 1 
HETATM 30 C C33 H1V . . . C 2 -18.33 8.08 -11.999 1 44 ? C33 H1V 501 A 1 
HETATM 31 C C34 H1V . . . C 2 -17.092 8.112 -12.632 1 39.06 ? C34 H1V 501 A 1 
HETATM 32 C C35 H1V . . . C 2 -16.03 8.775 -12.038 1 37.57 ? C35 H1V 501 A 1 
HETATM 33 C C36 H1V . . . C 2 -16.205 9.4 -10.812 1 38.03 ? C36 H1V 501 A 1 
HETATM 34 C C37 H1V . . . C 2 -33.807 13.112 -3.557 1 43.5 ? C37 H1V 501 A 1 
HETATM 35 C C38 H1V . . . C 2 -33.992 13.824 -2.249 1 48.07 ? C38 H1V 501 A 1 
HETATM 36 C C39 H1V . . . C 2 -32.959 13.875 -1.323 1 54.35 ? C39 H1V 501 A 1 
HETATM 37 C C4 H1V . . . C 2 -34.608 13.504 -4.753 1 47.32 ? C4 H1V 501 A 1 
HETATM 38 C C40 H1V . . . C 2 -33.148 14.526 -0.109 1 46.03 ? C40 H1V 501 A 1 
HETATM 39 C C41 H1V . . . C 2 -34.371 15.118 0.181 1 42.79 ? C41 H1V 501 A 1 
HETATM 40 C C42 H1V . . . C 2 -35.409 15.063 -0.74 1 53.38 ? C42 H1V 501 A 1 
HETATM 41 C C43 H1V . . . C 2 -35.218 14.411 -1.952 1 50.6 ? C43 H1V 501 A 1 
HETATM 42 C C5 H1V . . . C 2 -35.33 12.503 -5.579 1 49.54 ? C5 H1V 501 A 1 
HETATM 43 C C6 H1V . . . C 2 -36.261 10.294 -5.413 1 47.03 ? C6 H1V 501 A 1 
HETATM 44 C C7 H1V . . . C 2 -37.714 10.504 -5.746 1 46.6 ? C7 H1V 501 A 1 
HETATM 45 C C8 H1V . . . C 2 -34.087 10.663 -5.028 1 48.6 ? C8 H1V 501 A 1 
HETATM 46 C C9 H1V . . . C 2 -32.822 11.41 -4.87 1 52.2 ? C9 H1V 501 A 1 
HETATM 47 N N1 H1V . . . C 2 -35.685 9.111 -5.102 1 44.87 ? N1 H1V 501 A 1 
HETATM 48 N N2 H1V . . . C 2 -34.315 9.343 -4.853 1 50.77 ? N2 H1V 501 A 1 
HETATM 49 N N3 H1V . . . C 2 -29.581 11.592 -4.271 1 35.64 ? N3 H1V 501 A 1 
HETATM 50 N N4 H1V . . . C 2 -21.827 8.777 -6.656 1 48.06 ? N4 H1V 501 A 1 
HETATM 51 N N5 H1V . . . C 2 -18.351 9.594 -7.969 1 41.73 ? N5 H1V 501 A 1 
HETATM 52 N N6 H1V . . . C 2 -16.03 10.541 -6.308 1 33.71 ? N6 H1V 501 A 1 
HETATM 53 N N7 H1V . . . C 2 -15.525 9.246 -4.706 1 32.15 ? N7 H1V 501 A 1 
HETATM 54 N N8 H1V . . . C 2 -16.905 9.133 -4.977 1 28.3 ? N8 H1V 501 A 1 
HETATM 55 N N9 H1V . . . C 2 -32.995 12.148 -3.629 1 42.19 ? N9 H1V 501 A 1 
HETATM 56 O O1 H1V . . . C 2 -26.704 10.309 -4.018 1 31.85 ? O1 H1V 501 A 1 
HETATM 57 O O2 H1V . . . C 2 -24.609 9.073 -5.656 1 44.28 ? O2 H1V 501 A 1 
HETATM 58 O O3 H1V . . . C 2 -21.088 10.807 -7.238 1 38.21 ? O3 H1V 501 A 1 
HETATM 59 S S H1V . . . C 2 -36.154 13.269 -6.892 1 55.05 ? S H1V 501 A 1 
HETATM 60 S S1 H1V . . . C 2 -15.179 12.97 -7.291 1 32.21 ? S1 H1V 501 A 1 
HETATM 61 CL CL H1V . . . C 2 -16.852 7.306 -14.216 1 48.72 ? CL H1V 501 A 1 
HETATM 62 CL CL1 H1V . . . C 2 -34.602 15.954 1.751 1 62.69 ? CL1 H1V 501 A 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           62 
#