data_6DNL
#
_model_server_result.job_id            XmGod1adY-wvotXOCYjIJw 
_model_server_result.datetime_utc      '2024-10-19 20:09:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dnl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":210}' 
#
_entry.id    6DNL 
#
_exptl.entry_id    6DNL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              59.044 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ACETATE ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.96 
_cell.angle_gamma         90 
_cell.entry_id            6DNL 
_cell.length_a            43.25 
_cell.length_b            28.06 
_cell.length_c            45.8 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DNL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 K N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 4 A ASP 4 1_555 E ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc2 A OD1 ASP 13 A ASP 13 1_555 F ZN ZN . A ZN 205 2_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc3 A OD2 ASP 13 A ASP 13 1_555 F ZN ZN . A ZN 205 2_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc4 A NE2 HIS 19 A HIS 19 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc5 A OD2 ASP 21 A ASP 21 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? 
metalc ? metalc6 A OD2 ASP 27 A ASP 27 1_555 G ZN ZN . A ZN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc7 A OD1 ASP 31 A ASP 31 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? 
metalc ? metalc8 A OD1 ASP 31 A ASP 31 1_555 I ZN ZN . A ZN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
metalc ? metalc9 A OD2 ASP 31 A ASP 31 1_555 I ZN ZN . A ZN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc10 A SG CYS 33 A CYS 33 1_555 H ZN ZN . A ZN 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc11 A SG CYS 36 A CYS 36 1_555 G ZN ZN . A ZN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc12 A SG CYS 36 A CYS 36 1_555 H ZN ZN . A ZN 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc13 A ND1 HIS 50 A HIS 50 1_555 C ZN ZN . A ZN 202 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc14 A OD2 ASP 62 A ASP 62 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc15 A OE2 GLU 69 A GLU 69 1_555 F ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc16 A OE2 GLU 76 A GLU 76 1_555 E ZN ZN . A ZN 204 2_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc17 A OE1 GLU 96 A GLU 96 1_555 D ZN ZN . A ZN 203 1_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? 
metalc ? metalc18 A OE1 GLU 96 A GLU 96 1_555 I ZN ZN . A ZN 208 1_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
metalc ? metalc19 B ZN ZN . A ZN 201 1_555 M O HOH . A HOH 337 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? 
metalc ? metalc20 B ZN ZN . A ZN 201 1_555 M O HOH . A HOH 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc21 B ZN ZN . A ZN 201 1_555 M O HOH . A HOH 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? 
metalc ? metalc22 C ZN ZN . A ZN 202 1_555 M O HOH . A HOH 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc23 C ZN ZN . A ZN 202 1_555 M O HOH . A HOH 369 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? 
metalc ? metalc24 D ZN ZN . A ZN 203 1_555 M O HOH . A HOH 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc25 E ZN ZN . A ZN 204 1_555 K OXT ACT . A ACT 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc26 E ZN ZN . A ZN 204 1_555 K O ACT . A ACT 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc27 E ZN ZN . A ZN 204 1_555 M O HOH . A HOH 337 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? 
metalc ? metalc28 F ZN ZN . A ZN 205 1_555 M O HOH . A HOH 309 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc29 F ZN ZN . A ZN 205 1_555 M O HOH . A HOH 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? 
metalc ? metalc30 G ZN ZN . A ZN 206 1_555 J O ACT . A ACT 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc31 G ZN ZN . A ZN 206 1_555 M O HOH . A HOH 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc32 H ZN ZN . A ZN 207 1_555 J OXT ACT . A ACT 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc33 H ZN ZN . A ZN 207 1_555 M O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
#
_chem_comp.formula           'C2 H3 O2 -1' 
_chem_comp.formula_weight    59.044 
_chem_comp.id                ACT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ACETATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O ACT doub 1 n n 
C OXT ACT sing 2 n n 
C CH3 ACT sing 3 n n 
CH3 H1 ACT sing 4 n n 
CH3 H2 ACT sing 5 n n 
CH3 H3 ACT sing 6 n n 
#
_atom_sites.entry_id                     6DNL 
_atom_sites.fract_transf_matrix[1][1]    0.023121 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004478 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.035638 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02224 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 201 5 ZN ZN . 
C 2 ZN A 1 202 6 ZN ZN . 
D 2 ZN A 1 203 9 ZN ZN . 
E 2 ZN A 1 204 10 ZN ZN . 
F 2 ZN A 1 205 12 ZN ZN . 
G 2 ZN A 1 206 15 ZN ZN . 
H 2 ZN A 1 207 16 ZN ZN . 
I 2 ZN A 1 208 17 ZN ZN . 
J 3 ACT A 1 209 1 ACT LIG . 
K 3 ACT A 1 210 2 ACT LIG . 
L 3 ACT A 1 211 3 ACT LIG . 
M 4 HOH A 1 301 26 HOH HOH . 
M 4 HOH A 2 302 179 HOH HOH . 
M 4 HOH A 3 303 175 HOH HOH . 
M 4 HOH A 4 304 124 HOH HOH . 
M 4 HOH A 5 305 172 HOH HOH . 
M 4 HOH A 6 306 113 HOH HOH . 
M 4 HOH A 7 307 150 HOH HOH . 
M 4 HOH A 8 308 127 HOH HOH . 
M 4 HOH A 9 309 139 HOH HOH . 
M 4 HOH A 10 310 148 HOH HOH . 
M 4 HOH A 11 311 176 HOH HOH . 
M 4 HOH A 12 312 125 HOH HOH . 
M 4 HOH A 13 313 18 HOH HOH . 
M 4 HOH A 14 314 35 HOH HOH . 
M 4 HOH A 15 315 19 HOH HOH . 
M 4 HOH A 16 316 169 HOH HOH . 
M 4 HOH A 17 317 21 HOH HOH . 
M 4 HOH A 18 318 62 HOH HOH . 
M 4 HOH A 19 319 160 HOH HOH . 
M 4 HOH A 20 320 14 HOH HOH . 
M 4 HOH A 21 321 98 HOH HOH . 
M 4 HOH A 22 322 122 HOH HOH . 
M 4 HOH A 23 323 149 HOH HOH . 
M 4 HOH A 24 324 3 HOH HOH . 
M 4 HOH A 25 325 91 HOH HOH . 
M 4 HOH A 26 326 25 HOH HOH . 
M 4 HOH A 27 327 31 HOH HOH . 
M 4 HOH A 28 328 111 HOH HOH . 
M 4 HOH A 29 329 6 HOH HOH . 
M 4 HOH A 30 330 15 HOH HOH . 
M 4 HOH A 31 331 168 HOH HOH . 
M 4 HOH A 32 332 130 HOH HOH . 
M 4 HOH A 33 333 16 HOH HOH . 
M 4 HOH A 34 334 99 HOH HOH . 
M 4 HOH A 35 335 8 HOH HOH . 
M 4 HOH A 36 336 34 HOH HOH . 
M 4 HOH A 37 337 128 HOH HOH . 
M 4 HOH A 38 338 147 HOH HOH . 
M 4 HOH A 39 339 138 HOH HOH . 
M 4 HOH A 40 340 52 HOH HOH . 
M 4 HOH A 41 341 30 HOH HOH . 
M 4 HOH A 42 342 145 HOH HOH . 
M 4 HOH A 43 343 23 HOH HOH . 
M 4 HOH A 44 344 45 HOH HOH . 
M 4 HOH A 45 345 178 HOH HOH . 
M 4 HOH A 46 346 24 HOH HOH . 
M 4 HOH A 47 347 27 HOH HOH . 
M 4 HOH A 48 348 119 HOH HOH . 
M 4 HOH A 49 349 167 HOH HOH . 
M 4 HOH A 50 350 117 HOH HOH . 
M 4 HOH A 51 351 81 HOH HOH . 
M 4 HOH A 52 352 174 HOH HOH . 
M 4 HOH A 53 353 12 HOH HOH . 
M 4 HOH A 54 354 51 HOH HOH . 
M 4 HOH A 55 355 155 HOH HOH . 
M 4 HOH A 56 356 135 HOH HOH . 
M 4 HOH A 57 357 182 HOH HOH . 
M 4 HOH A 58 358 140 HOH HOH . 
M 4 HOH A 59 359 109 HOH HOH . 
M 4 HOH A 60 360 181 HOH HOH . 
M 4 HOH A 61 361 28 HOH HOH . 
M 4 HOH A 62 362 136 HOH HOH . 
M 4 HOH A 63 363 163 HOH HOH . 
M 4 HOH A 64 364 151 HOH HOH . 
M 4 HOH A 65 365 185 HOH HOH . 
M 4 HOH A 66 366 129 HOH HOH . 
M 4 HOH A 67 367 29 HOH HOH . 
M 4 HOH A 68 368 123 HOH HOH . 
M 4 HOH A 69 369 118 HOH HOH . 
M 4 HOH A 70 370 143 HOH HOH . 
M 4 HOH A 71 371 48 HOH HOH . 
M 4 HOH A 72 372 105 HOH HOH . 
M 4 HOH A 73 373 156 HOH HOH . 
M 4 HOH A 74 374 157 HOH HOH . 
M 4 HOH A 75 375 183 HOH HOH . 
M 4 HOH A 76 376 55 HOH HOH . 
M 4 HOH A 77 377 53 HOH HOH . 
M 4 HOH A 78 378 154 HOH HOH . 
M 4 HOH A 79 379 49 HOH HOH . 
M 4 HOH A 80 380 177 HOH HOH . 
M 4 HOH A 81 381 158 HOH HOH . 
M 4 HOH A 82 382 152 HOH HOH . 
M 4 HOH A 83 383 184 HOH HOH . 
M 4 HOH A 84 384 37 HOH HOH . 
M 4 HOH A 85 385 141 HOH HOH . 
M 4 HOH A 86 386 180 HOH HOH . 
M 4 HOH A 87 387 72 HOH HOH . 
M 4 HOH A 88 388 161 HOH HOH . 
M 4 HOH A 89 389 166 HOH HOH . 
M 4 HOH A 90 390 115 HOH HOH . 
M 4 HOH A 91 391 162 HOH HOH . 
M 4 HOH A 92 392 126 HOH HOH . 
M 4 HOH A 93 393 84 HOH HOH . 
M 4 HOH A 94 394 54 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C ACT . . . K 3 -6.899 12.084 25.069 1 17.87 ? C ACT 210 A 1 
HETATM 2 O O ACT . . . K 3 -6.039 12.104 24.15 1 20.36 ? O ACT 210 A 1 
HETATM 3 O OXT ACT . . . K 3 -7.318 10.994 25.527 1 21.9 -1 OXT ACT 210 A 1 
HETATM 4 C CH3 ACT . . . K 3 -7.432 13.41 25.609 1 23.05 ? CH3 ACT 210 A 1 
HETATM 5 H H1 ACT . . . K 3 -7.424 14.074 24.902 1 27.66 ? H1 ACT 210 A 1 
HETATM 6 H H2 ACT . a . K 3 -8.339 13.288 25.929 0.5 27.66 ? H2 ACT 210 A 1 
HETATM 7 H H2 ACT . b . K 3 -6.87 13.71 26.34 0.5 27.66 ? H2 ACT 210 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#