data_6DNQ # _model_server_result.job_id k6aNvPecUt5456JSMiFVXQ _model_server_result.datetime_utc '2024-11-22 19:50:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dnq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":701}' # _entry.id 6DNQ # _exptl.entry_id 6DNQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 126.41 _cell.angle_gamma 90 _cell.entry_id 6DNQ _cell.length_a 118.825 _cell.length_b 51.166 _cell.length_c 72.047 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DNQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6DNQ _atom_sites.fract_transf_matrix[1][1] 0.008416 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006206 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019544 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017246 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 EDO D 1 701 3 EDO EDO . G 5 HOH E 1 101 23 HOH HOH . G 5 HOH E 2 102 10 HOH HOH . G 5 HOH E 3 103 32 HOH HOH . G 5 HOH E 4 104 15 HOH HOH . G 5 HOH E 5 105 29 HOH HOH . H 5 HOH C 1 401 12 HOH HOH . H 5 HOH C 2 402 24 HOH HOH . H 5 HOH C 3 403 26 HOH HOH . H 5 HOH C 4 404 34 HOH HOH . I 5 HOH D 1 801 14 HOH HOH . I 5 HOH D 2 802 4 HOH HOH . I 5 HOH D 3 803 6 HOH HOH . I 5 HOH D 4 804 20 HOH HOH . I 5 HOH D 5 805 9 HOH HOH . I 5 HOH D 6 806 2 HOH HOH . I 5 HOH D 7 807 16 HOH HOH . I 5 HOH D 8 808 27 HOH HOH . I 5 HOH D 9 809 31 HOH HOH . I 5 HOH D 10 810 13 HOH HOH . I 5 HOH D 11 811 25 HOH HOH . I 5 HOH D 12 812 18 HOH HOH . I 5 HOH D 13 813 7 HOH HOH . I 5 HOH D 14 814 33 HOH HOH . I 5 HOH D 15 815 22 HOH HOH . I 5 HOH D 16 816 19 HOH HOH . J 5 HOH A 1 401 30 HOH HOH . K 5 HOH B 1 701 1 HOH HOH . K 5 HOH B 2 702 11 HOH HOH . K 5 HOH B 3 703 5 HOH HOH . K 5 HOH B 4 704 8 HOH HOH . K 5 HOH B 5 705 28 HOH HOH . K 5 HOH B 6 706 3 HOH HOH . K 5 HOH B 7 707 17 HOH HOH . K 5 HOH B 8 708 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 24.303 23.131 38.716 1 64.89 ? C1 EDO 701 D 1 HETATM 2 O O1 EDO . . . F 4 24.788 24.329 39.333 1 62.94 ? O1 EDO 701 D 1 HETATM 3 C C2 EDO . . . F 4 24.796 23.059 37.276 1 58.26 ? C2 EDO 701 D 1 HETATM 4 O O2 EDO . . . F 4 26.207 22.829 37.284 1 61.09 ? O2 EDO 701 D 1 HETATM 5 H H11 EDO . . . F 4 24.659 22.26 39.271 1 77.87 ? H11 EDO 701 D 1 HETATM 6 H H12 EDO . . . F 4 23.212 23.123 38.733 1 77.87 ? H12 EDO 701 D 1 HETATM 7 H HO1 EDO . . . F 4 24.474 24.371 40.247 1 75.53 ? HO1 EDO 701 D 1 HETATM 8 H H21 EDO . . . F 4 24.29 22.248 36.749 1 69.91 ? H21 EDO 701 D 1 HETATM 9 H H22 EDO . . . F 4 24.575 23.996 36.76 1 69.91 ? H22 EDO 701 D 1 HETATM 10 H HO2 EDO . . . F 4 26.531 22.782 36.374 1 73.3 ? HO2 EDO 701 D 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #