data_6DO1
#
_model_server_result.job_id            VOPBxZTjPVahAo8nytwkdA 
_model_server_result.datetime_utc      '2025-03-01 03:28:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6do1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1001}' 
#
_entry.id    6DO1 
#
_exptl.entry_id    6DO1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DO1 
_cell.length_a            135.682 
_cell.length_b            227.796 
_cell.length_c            41.5 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DO1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,H,I,J,K,L,M,N,U,W,Y,AA 1 1 
B,D,F,G,O,P,Q,R,S,T,V,X,Z 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 25 A CYS 18 1_555 A SG CYS 380 A CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 108 A CYS 101 1_555 A SG CYS 187 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 B SG CYS 25 B CYS 18 1_555 B SG CYS 380 B CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 108 B CYS 101 1_555 B SG CYS 187 B CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf5 C SG CYS 22 C CYS 22 1_555 C SG CYS 95 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf6 D SG CYS 22 D CYS 22 1_555 D SG CYS 95 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf7 E SG CYS 22 E CYS 22 1_555 E SG CYS 95 E CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf8 F SG CYS 22 F CYS 22 1_555 F SG CYS 95 F CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A ND2 ASN 183 A ASN 176 1_555 I C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 B ND2 ASN 183 B ASN 176 1_555 O C1 NAG . B NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale3 G C SAR 1 G SAR 1 1_555 G N ARG 2 G ARG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 H C SAR 1 H SAR 1 1_555 H N ARG 2 H ARG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6DO1 
_atom_sites.fract_transf_matrix[1][1]    0.00737 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00439 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024096 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 4 NAG A 1 1001 1001 NAG NAG . 
J 5 CL A 1 1002 5 CL CL . 
K 5 CL A 1 1003 6 CL CL . 
L 5 CL A 1 1004 7 CL CL . 
M 6 OLC A 1 1005 2 OLC OLC . 
N 6 OLC A 1 1006 4 OLC OLC . 
O 4 NAG B 1 1001 1001 NAG NAG . 
P 5 CL B 1 1002 3 CL CL . 
Q 5 CL B 1 1003 4 CL CL . 
R 6 OLC B 1 1004 1 OLC OLC . 
S 6 OLC B 1 1005 3 OLC OLC . 
T 6 OLC B 1 1006 5 OLC OLC . 
U 7 HOH A 1 1101 183 HOH HOH . 
U 7 HOH A 2 1102 193 HOH HOH . 
U 7 HOH A 3 1103 99 HOH HOH . 
U 7 HOH A 4 1104 116 HOH HOH . 
U 7 HOH A 5 1105 98 HOH HOH . 
U 7 HOH A 6 1106 94 HOH HOH . 
U 7 HOH A 7 1107 77 HOH HOH . 
U 7 HOH A 8 1108 69 HOH HOH . 
U 7 HOH A 9 1109 93 HOH HOH . 
U 7 HOH A 10 1110 76 HOH HOH . 
U 7 HOH A 11 1111 192 HOH HOH . 
U 7 HOH A 12 1112 88 HOH HOH . 
U 7 HOH A 13 1113 74 HOH HOH . 
U 7 HOH A 14 1114 90 HOH HOH . 
U 7 HOH A 15 1115 112 HOH HOH . 
U 7 HOH A 16 1116 66 HOH HOH . 
U 7 HOH A 17 1117 100 HOH HOH . 
U 7 HOH A 18 1118 103 HOH HOH . 
U 7 HOH A 19 1119 104 HOH HOH . 
U 7 HOH A 20 1120 113 HOH HOH . 
U 7 HOH A 21 1121 102 HOH HOH . 
U 7 HOH A 22 1122 92 HOH HOH . 
U 7 HOH A 23 1123 60 HOH HOH . 
U 7 HOH A 24 1124 179 HOH HOH . 
U 7 HOH A 25 1125 115 HOH HOH . 
U 7 HOH A 26 1126 187 HOH HOH . 
U 7 HOH A 27 1127 114 HOH HOH . 
U 7 HOH A 28 1128 188 HOH HOH . 
U 7 HOH A 29 1129 89 HOH HOH . 
U 7 HOH A 30 1130 123 HOH HOH . 
U 7 HOH A 31 1131 134 HOH HOH . 
U 7 HOH A 32 1132 110 HOH HOH . 
U 7 HOH A 33 1133 119 HOH HOH . 
U 7 HOH A 34 1134 101 HOH HOH . 
U 7 HOH A 35 1135 191 HOH HOH . 
U 7 HOH A 36 1136 198 HOH HOH . 
U 7 HOH A 37 1137 190 HOH HOH . 
U 7 HOH A 38 1138 189 HOH HOH . 
V 7 HOH B 1 1101 200 HOH HOH . 
V 7 HOH B 2 1102 196 HOH HOH . 
V 7 HOH B 3 1103 199 HOH HOH . 
V 7 HOH B 4 1104 128 HOH HOH . 
V 7 HOH B 5 1105 185 HOH HOH . 
V 7 HOH B 6 1106 133 HOH HOH . 
V 7 HOH B 7 1107 120 HOH HOH . 
V 7 HOH B 8 1108 126 HOH HOH . 
V 7 HOH B 9 1109 195 HOH HOH . 
V 7 HOH B 10 1110 178 HOH HOH . 
V 7 HOH B 11 1111 137 HOH HOH . 
V 7 HOH B 12 1112 106 HOH HOH . 
V 7 HOH B 13 1113 70 HOH HOH . 
V 7 HOH B 14 1114 130 HOH HOH . 
V 7 HOH B 15 1115 64 HOH HOH . 
V 7 HOH B 16 1116 131 HOH HOH . 
V 7 HOH B 17 1117 194 HOH HOH . 
V 7 HOH B 18 1118 121 HOH HOH . 
V 7 HOH B 19 1119 140 HOH HOH . 
V 7 HOH B 20 1120 124 HOH HOH . 
V 7 HOH B 21 1121 136 HOH HOH . 
V 7 HOH B 22 1122 177 HOH HOH . 
V 7 HOH B 23 1123 127 HOH HOH . 
V 7 HOH B 24 1124 107 HOH HOH . 
V 7 HOH B 25 1125 141 HOH HOH . 
V 7 HOH B 26 1126 86 HOH HOH . 
V 7 HOH B 27 1127 197 HOH HOH . 
V 7 HOH B 28 1128 153 HOH HOH . 
W 7 HOH C 1 201 109 HOH HOH . 
X 7 HOH D 1 201 129 HOH HOH . 
X 7 HOH D 2 202 181 HOH HOH . 
X 7 HOH D 3 203 145 HOH HOH . 
X 7 HOH D 4 204 105 HOH HOH . 
Y 7 HOH E 1 201 182 HOH HOH . 
Z 7 HOH G 1 101 87 HOH HOH . 
Z 7 HOH G 2 102 132 HOH HOH . 
Z 7 HOH G 3 103 139 HOH HOH . 
AA 7 HOH H 1 101 75 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . I 4 11.899 25.345 16.258 1 81.78 ? C1 NAG 1001 A 1 
HETATM 2 C C2 NAG . . . I 4 12.619 24.374 17.187 1 79.21 ? C2 NAG 1001 A 1 
HETATM 3 C C3 NAG . . . I 4 12.462 22.946 16.677 1 84.4 ? C3 NAG 1001 A 1 
HETATM 4 C C4 NAG . . . I 4 10.988 22.609 16.497 1 103 ? C4 NAG 1001 A 1 
HETATM 5 C C5 NAG . . . I 4 10.307 23.649 15.61 1 111.34 ? C5 NAG 1001 A 1 
HETATM 6 C C6 NAG . . . I 4 8.812 23.451 15.516 1 110.86 ? C6 NAG 1001 A 1 
HETATM 7 C C7 NAG . . . I 4 14.537 25.248 18.44 1 71.9 ? C7 NAG 1001 A 1 
HETATM 8 C C8 NAG . . . I 4 16.006 25.544 18.413 1 65.2 ? C8 NAG 1001 A 1 
HETATM 9 N N2 NAG . . . I 4 14.025 24.72 17.324 1 80.12 ? N2 NAG 1001 A 1 
HETATM 10 O O3 NAG . . . I 4 13.057 22.043 17.602 1 83.06 ? O3 NAG 1001 A 1 
HETATM 11 O O4 NAG . . . I 4 10.852 21.325 15.899 1 111.4 ? O4 NAG 1001 A 1 
HETATM 12 O O5 NAG . . . I 4 10.516 24.967 16.143 1 111.07 ? O5 NAG 1001 A 1 
HETATM 13 O O6 NAG . . . I 4 8.219 24.364 14.602 1 115.95 ? O6 NAG 1001 A 1 
HETATM 14 O O7 NAG . . . I 4 13.845 25.475 19.427 1 71.98 ? O7 NAG 1001 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           14 
#