data_6DOY # _model_server_result.job_id 831K8jKz3g2My449ryDY3g _model_server_result.datetime_utc '2024-11-17 00:31:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6doy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":208}' # _entry.id 6DOY # _exptl.entry_id 6DOY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.81 _cell.angle_gamma 90 _cell.entry_id 6DOY _cell.length_a 81.898 _cell.length_b 37.35 _cell.length_c 62.034 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DOY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 R N N ? 6 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 17 A ASP 71 1_555 P LI LI . A LI 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc2 A OD2 ASP 17 A ASP 71 1_555 Q LI LI . A LI 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc3 A OD1 ASP 78 A ASP 132 1_555 P LI LI . A LI 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc4 A OD2 ASP 78 A ASP 132 1_555 P LI LI . A LI 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc5 A OD1 ASP 138 A ASP 192 1_555 Q LI LI . A LI 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc6 P LI LI . A LI 213 1_555 B OP1 C 5 B C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc7 Q LI LI . A LI 214 1_555 T O HOH . A HOH 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc8 Q LI LI . A LI 214 1_555 B OP1 C 5 B C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.763 ? hydrog WATSON-CRICK hydrog1 B N1 A 1 B A 1 1_555 C N3 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N6 A 1 B A 1 1_555 C O4 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N3 C 2 B C 2 1_555 C N1 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N4 C 2 B C 2 1_555 C O6 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O2 C 2 B C 2 1_555 C N2 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 A 3 B A 3 1_555 C N3 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N6 A 3 B A 3 1_555 C O4 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N3 U 4 B U 4 1_555 C N1 DA 3 C DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O4 U 4 B U 4 1_555 C N6 DA 3 C DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 C 5 B C 5 1_555 C N1 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N4 C 5 B C 5 1_555 C O6 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B O2 C 5 B C 5 1_555 C N2 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N1 G 6 B G 6 1_555 C N3 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N2 G 6 B G 6 1_555 C O2 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O6 G 6 B G 6 1_555 C N4 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 294 n n C1 C2 EDO sing 295 n n C1 H11 EDO sing 296 n n C1 H12 EDO sing 297 n n O1 HO1 EDO sing 298 n n C2 O2 EDO sing 299 n n C2 H21 EDO sing 300 n n C2 H22 EDO sing 301 n n O2 HO2 EDO sing 302 n n # _atom_sites.entry_id 6DOY _atom_sites.fract_transf_matrix[1][1] 0.01221 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001459 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026774 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 IOD A 1 201 1 IOD IOD . E 4 IOD A 1 202 2 IOD IOD . F 4 IOD A 1 203 3 IOD IOD . G 4 IOD A 1 204 4 IOD IOD . H 5 GOL A 1 205 1 GOL GOL . I 5 GOL A 1 206 2 GOL GOL . J 6 EDO A 1 207 3 EDO EDO . K 6 EDO A 1 208 4 EDO EDO . L 6 EDO A 1 209 5 EDO EDO . M 6 EDO A 1 210 6 EDO EDO . N 6 EDO A 1 211 7 EDO EDO . O 6 EDO A 1 212 8 EDO EDO . P 7 LI A 1 213 1 LI LI . Q 7 LI A 1 214 2 LI LI . R 6 EDO B 1 101 10 EDO EDO . S 6 EDO C 1 101 9 EDO EDO . T 8 HOH A 1 301 209 HOH HOH . T 8 HOH A 2 302 96 HOH HOH . T 8 HOH A 3 303 193 HOH HOH . T 8 HOH A 4 304 16 HOH HOH . T 8 HOH A 5 305 212 HOH HOH . T 8 HOH A 6 306 105 HOH HOH . T 8 HOH A 7 307 174 HOH HOH . T 8 HOH A 8 308 153 HOH HOH . T 8 HOH A 9 309 45 HOH HOH . T 8 HOH A 10 310 6 HOH HOH . T 8 HOH A 11 311 187 HOH HOH . T 8 HOH A 12 312 60 HOH HOH . T 8 HOH A 13 313 71 HOH HOH . T 8 HOH A 14 314 62 HOH HOH . T 8 HOH A 15 315 143 HOH HOH . T 8 HOH A 16 316 157 HOH HOH . T 8 HOH A 17 317 35 HOH HOH . T 8 HOH A 18 318 141 HOH HOH . T 8 HOH A 19 319 154 HOH HOH . T 8 HOH A 20 320 21 HOH HOH . T 8 HOH A 21 321 97 HOH HOH . T 8 HOH A 22 322 130 HOH HOH . T 8 HOH A 23 323 69 HOH HOH . T 8 HOH A 24 324 56 HOH HOH . T 8 HOH A 25 325 138 HOH HOH . T 8 HOH A 26 326 14 HOH HOH . T 8 HOH A 27 327 221 HOH HOH . T 8 HOH A 28 328 192 HOH HOH . T 8 HOH A 29 329 106 HOH HOH . T 8 HOH A 30 330 22 HOH HOH . T 8 HOH A 31 331 172 HOH HOH . T 8 HOH A 32 332 86 HOH HOH . T 8 HOH A 33 333 220 HOH HOH . T 8 HOH A 34 334 194 HOH HOH . T 8 HOH A 35 335 42 HOH HOH . T 8 HOH A 36 336 20 HOH HOH . T 8 HOH A 37 337 36 HOH HOH . T 8 HOH A 38 338 34 HOH HOH . T 8 HOH A 39 339 186 HOH HOH . T 8 HOH A 40 340 195 HOH HOH . T 8 HOH A 41 341 129 HOH HOH . T 8 HOH A 42 342 200 HOH HOH . T 8 HOH A 43 343 81 HOH HOH . T 8 HOH A 44 344 95 HOH HOH . T 8 HOH A 45 345 126 HOH HOH . T 8 HOH A 46 346 218 HOH HOH . T 8 HOH A 47 347 217 HOH HOH . T 8 HOH A 48 348 120 HOH HOH . T 8 HOH A 49 349 169 HOH HOH . T 8 HOH A 50 350 2 HOH HOH . T 8 HOH A 51 351 182 HOH HOH . T 8 HOH A 52 352 122 HOH HOH . T 8 HOH A 53 353 9 HOH HOH . T 8 HOH A 54 354 168 HOH HOH . T 8 HOH A 55 355 57 HOH HOH . T 8 HOH A 56 356 47 HOH HOH . T 8 HOH A 57 357 84 HOH HOH . T 8 HOH A 58 358 59 HOH HOH . T 8 HOH A 59 359 223 HOH HOH . T 8 HOH A 60 360 77 HOH HOH . T 8 HOH A 61 361 50 HOH HOH . T 8 HOH A 62 362 28 HOH HOH . T 8 HOH A 63 363 227 HOH HOH . T 8 HOH A 64 364 206 HOH HOH . T 8 HOH A 65 365 49 HOH HOH . T 8 HOH A 66 366 4 HOH HOH . T 8 HOH A 67 367 76 HOH HOH . T 8 HOH A 68 368 118 HOH HOH . T 8 HOH A 69 369 162 HOH HOH . T 8 HOH A 70 370 23 HOH HOH . T 8 HOH A 71 371 203 HOH HOH . T 8 HOH A 72 372 44 HOH HOH . T 8 HOH A 73 373 229 HOH HOH . T 8 HOH A 74 374 145 HOH HOH . T 8 HOH A 75 375 135 HOH HOH . T 8 HOH A 76 376 55 HOH HOH . T 8 HOH A 77 377 104 HOH HOH . T 8 HOH A 78 378 205 HOH HOH . T 8 HOH A 79 379 93 HOH HOH . T 8 HOH A 80 380 166 HOH HOH . T 8 HOH A 81 381 26 HOH HOH . T 8 HOH A 82 382 63 HOH HOH . T 8 HOH A 83 383 119 HOH HOH . T 8 HOH A 84 384 167 HOH HOH . T 8 HOH A 85 385 146 HOH HOH . T 8 HOH A 86 386 230 HOH HOH . T 8 HOH A 87 387 161 HOH HOH . T 8 HOH A 88 388 53 HOH HOH . T 8 HOH A 89 389 83 HOH HOH . T 8 HOH A 90 390 180 HOH HOH . T 8 HOH A 91 391 91 HOH HOH . T 8 HOH A 92 392 171 HOH HOH . T 8 HOH A 93 393 1 HOH HOH . T 8 HOH A 94 394 112 HOH HOH . T 8 HOH A 95 395 51 HOH HOH . T 8 HOH A 96 396 18 HOH HOH . T 8 HOH A 97 397 213 HOH HOH . T 8 HOH A 98 398 155 HOH HOH . T 8 HOH A 99 399 52 HOH HOH . T 8 HOH A 100 400 226 HOH HOH . T 8 HOH A 101 401 160 HOH HOH . T 8 HOH A 102 402 139 HOH HOH . T 8 HOH A 103 403 103 HOH HOH . T 8 HOH A 104 404 108 HOH HOH . T 8 HOH A 105 405 181 HOH HOH . T 8 HOH A 106 406 216 HOH HOH . T 8 HOH A 107 407 198 HOH HOH . T 8 HOH A 108 408 185 HOH HOH . T 8 HOH A 109 409 13 HOH HOH . T 8 HOH A 110 410 151 HOH HOH . T 8 HOH A 111 411 7 HOH HOH . T 8 HOH A 112 412 131 HOH HOH . T 8 HOH A 113 413 124 HOH HOH . T 8 HOH A 114 414 66 HOH HOH . T 8 HOH A 115 415 127 HOH HOH . T 8 HOH A 116 416 222 HOH HOH . T 8 HOH A 117 417 148 HOH HOH . T 8 HOH A 118 418 89 HOH HOH . T 8 HOH A 119 419 176 HOH HOH . T 8 HOH A 120 420 39 HOH HOH . T 8 HOH A 121 421 68 HOH HOH . T 8 HOH A 122 422 207 HOH HOH . T 8 HOH A 123 423 136 HOH HOH . T 8 HOH A 124 424 12 HOH HOH . T 8 HOH A 125 425 128 HOH HOH . T 8 HOH A 126 426 191 HOH HOH . T 8 HOH A 127 427 214 HOH HOH . T 8 HOH A 128 428 90 HOH HOH . T 8 HOH A 129 429 190 HOH HOH . T 8 HOH A 130 430 75 HOH HOH . T 8 HOH A 131 431 188 HOH HOH . T 8 HOH A 132 432 73 HOH HOH . T 8 HOH A 133 433 215 HOH HOH . T 8 HOH A 134 434 165 HOH HOH . T 8 HOH A 135 435 27 HOH HOH . T 8 HOH A 136 436 29 HOH HOH . T 8 HOH A 137 437 121 HOH HOH . T 8 HOH A 138 438 40 HOH HOH . T 8 HOH A 139 439 123 HOH HOH . T 8 HOH A 140 440 100 HOH HOH . T 8 HOH A 141 441 228 HOH HOH . T 8 HOH A 142 442 199 HOH HOH . T 8 HOH A 143 443 144 HOH HOH . T 8 HOH A 144 444 31 HOH HOH . T 8 HOH A 145 445 201 HOH HOH . T 8 HOH A 146 446 61 HOH HOH . T 8 HOH A 147 447 179 HOH HOH . T 8 HOH A 148 448 82 HOH HOH . T 8 HOH A 149 449 208 HOH HOH . T 8 HOH A 150 450 74 HOH HOH . T 8 HOH A 151 451 204 HOH HOH . T 8 HOH A 152 452 170 HOH HOH . T 8 HOH A 153 453 99 HOH HOH . T 8 HOH A 154 454 210 HOH HOH . T 8 HOH A 155 455 43 HOH HOH . U 8 HOH B 1 201 147 HOH HOH . U 8 HOH B 2 202 109 HOH HOH . U 8 HOH B 3 203 15 HOH HOH . U 8 HOH B 4 204 79 HOH HOH . U 8 HOH B 5 205 133 HOH HOH . U 8 HOH B 6 206 67 HOH HOH . U 8 HOH B 7 207 184 HOH HOH . U 8 HOH B 8 208 80 HOH HOH . U 8 HOH B 9 209 150 HOH HOH . U 8 HOH B 10 210 111 HOH HOH . U 8 HOH B 11 211 115 HOH HOH . U 8 HOH B 12 212 183 HOH HOH . U 8 HOH B 13 213 132 HOH HOH . V 8 HOH C 1 201 110 HOH HOH . V 8 HOH C 2 202 113 HOH HOH . V 8 HOH C 3 203 11 HOH HOH . V 8 HOH C 4 204 10 HOH HOH . V 8 HOH C 5 205 211 HOH HOH . V 8 HOH C 6 206 19 HOH HOH . V 8 HOH C 7 207 33 HOH HOH . V 8 HOH C 8 208 30 HOH HOH . V 8 HOH C 9 209 65 HOH HOH . V 8 HOH C 10 210 142 HOH HOH . V 8 HOH C 11 211 58 HOH HOH . V 8 HOH C 12 212 114 HOH HOH . V 8 HOH C 13 213 196 HOH HOH . V 8 HOH C 14 214 85 HOH HOH . V 8 HOH C 15 215 107 HOH HOH . V 8 HOH C 16 216 197 HOH HOH . V 8 HOH C 17 217 225 HOH HOH . V 8 HOH C 18 218 78 HOH HOH . V 8 HOH C 19 219 224 HOH HOH . V 8 HOH C 20 220 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . K 6 39.386 -14.988 21.379 1 78.03 ? C1 EDO 208 A 1 HETATM 2 O O1 EDO . . . K 6 38.421 -16.045 21.326 1 77.9 ? O1 EDO 208 A 1 HETATM 3 C C2 EDO . . . K 6 40.083 -15.007 22.734 1 78.12 ? C2 EDO 208 A 1 HETATM 4 O O2 EDO . . . K 6 40.877 -13.823 22.879 1 78.32 ? O2 EDO 208 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 4 #