data_6DP2 # _model_server_result.job_id ZT5gsoYm8sI3VKVNF89r_Q _model_server_result.datetime_utc '2024-10-28 13:14:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dp2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":211}' # _entry.id 6DP2 # _exptl.entry_id 6DP2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.62 _cell.angle_gamma 90 _cell.entry_id 6DP2 _cell.length_a 81.396 _cell.length_b 37.309 _cell.length_c 62.34 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DP2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' U 4 B U 4 1_555 C P C 1 b C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 sing metalc ? metalc1 A OD2 ASP 17 A ASP 71 1_555 E MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc2 A OD1 ASP 17 A ASP 71 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc3 A OE1 GLU 55 A GLU 109 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc4 A OD1 ASP 78 A ASP 132 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc5 A OD2 ASP 78 A ASP 132 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc6 A OD1 ASP 138 A ASP 192 1_555 E MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc7 A OD1 ASP 138 A ASP 192 1_555 G K K . A K 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.365 ? metalc ? metalc8 A O ARG 141 A ARG 195 1_555 G K K . A K 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.367 ? metalc ? metalc9 E MG MG . A MG 201 1_555 R O HOH . A HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc10 E MG MG . A MG 201 1_555 R O HOH . A HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc11 E MG MG . A MG 201 1_555 R O HOH . A HOH 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc12 E MG MG . A MG 201 1_555 C OP1 C 1 b C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc13 F MG MG . A MG 202 1_555 B O3' U 4 B U 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc14 F MG MG . A MG 202 1_555 C OP1 C 1 b C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc15 G K K . A K 203 1_555 R O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.958 ? metalc ? metalc16 G K K . A K 203 1_555 R O HOH . A HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? metalc ? metalc17 G K K . A K 203 1_555 R O HOH . A HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.284 ? metalc ? metalc18 G K K . A K 203 1_555 C OP2 G 2 b G 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc19 D O4 DT 4 C DT 4 1_555 P K K . C K 101 1_555 ? ? ? ? A ? ? ? ? ? ? ? 3.456 ? metalc ? metalc20 D O6 DG 5 C DG 5 1_555 P K K . C K 101 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.636 ? metalc ? metalc21 P K K . C K 101 1_555 U O HOH . C HOH 211 1_555 ? A ? ? ? ? ? ? ? ? ? ? 3.15 ? hydrog WATSON-CRICK hydrog1 B N1 A 1 B A 1 1_555 D N3 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N6 A 1 B A 1 1_555 D O4 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N3 C 2 B C 2 1_555 D N1 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N4 C 2 B C 2 1_555 D O6 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O2 C 2 B C 2 1_555 D N2 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 A 3 B A 3 1_555 D N3 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N6 A 3 B A 3 1_555 D O4 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N3 U 4 B U 4 1_555 D N1 DA 3 C DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O4 U 4 B U 4 1_555 D N6 DA 3 C DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C N3 C 1 b C 5 1_555 D N1 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N4 C 1 b C 5 1_555 D O6 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C O2 C 1 b C 5 1_555 D N2 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N1 G 2 b G 6 1_555 D N3 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N2 G 2 b G 6 1_555 D O2 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C O6 G 2 b G 6 1_555 D N4 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 294 n n C1 C2 EDO sing 295 n n C1 H11 EDO sing 296 n n C1 H12 EDO sing 297 n n O1 HO1 EDO sing 298 n n C2 O2 EDO sing 299 n n C2 H21 EDO sing 300 n n C2 H22 EDO sing 301 n n O2 HO2 EDO sing 302 n n # _atom_sites.entry_id 6DP2 _atom_sites.fract_transf_matrix[1][1] 0.012286 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001427 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026803 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 MG A 1 201 201 MG MG . F 5 MG A 1 202 202 MG MG . G 6 K A 1 203 211 K K . H 7 IOD A 1 204 1 IOD IOD . I 7 IOD A 1 205 2 IOD IOD . J 7 IOD A 1 206 3 IOD IOD . K 7 IOD A 1 207 4 IOD IOD . L 8 GOL A 1 208 2 GOL GOL . M 8 GOL A 1 209 3 GOL GOL . N 8 GOL A 1 210 4 GOL GOL . O 9 EDO A 1 211 5 EDO EDO . P 6 K C 1 101 213 K K . Q 8 GOL C 1 102 1 GOL GOL . R 10 HOH A 1 301 193 HOH HOH . R 10 HOH A 2 302 49 HOH HOH . R 10 HOH A 3 303 17 HOH HOH . R 10 HOH A 4 304 62 HOH HOH . R 10 HOH A 5 305 96 HOH HOH . R 10 HOH A 6 306 130 HOH HOH . R 10 HOH A 7 307 156 HOH HOH . R 10 HOH A 8 308 105 HOH HOH . R 10 HOH A 9 309 117 HOH HOH . R 10 HOH A 10 310 70 HOH HOH . R 10 HOH A 11 311 187 HOH HOH . R 10 HOH A 12 312 97 HOH HOH . R 10 HOH A 13 313 154 HOH HOH . R 10 HOH A 14 314 169 HOH HOH . R 10 HOH A 15 315 157 HOH HOH . R 10 HOH A 16 316 138 HOH HOH . R 10 HOH A 17 317 35 HOH HOH . R 10 HOH A 18 318 118 HOH HOH . R 10 HOH A 19 319 203 HOH HOH . R 10 HOH A 20 320 120 HOH HOH . R 10 HOH A 21 321 88 HOH HOH . R 10 HOH A 22 322 140 HOH HOH . R 10 HOH A 23 323 36 HOH HOH . R 10 HOH A 24 324 126 HOH HOH . R 10 HOH A 25 325 81 HOH HOH . R 10 HOH A 26 326 59 HOH HOH . R 10 HOH A 27 327 21 HOH HOH . R 10 HOH A 28 328 129 HOH HOH . R 10 HOH A 29 329 44 HOH HOH . R 10 HOH A 30 330 95 HOH HOH . R 10 HOH A 31 331 192 HOH HOH . R 10 HOH A 32 332 194 HOH HOH . R 10 HOH A 33 333 22 HOH HOH . R 10 HOH A 34 334 16 HOH HOH . R 10 HOH A 35 335 205 HOH HOH . R 10 HOH A 36 336 168 HOH HOH . R 10 HOH A 37 337 45 HOH HOH . R 10 HOH A 38 338 53 HOH HOH . R 10 HOH A 39 339 20 HOH HOH . R 10 HOH A 40 340 28 HOH HOH . R 10 HOH A 41 341 56 HOH HOH . R 10 HOH A 42 342 57 HOH HOH . R 10 HOH A 43 343 71 HOH HOH . R 10 HOH A 44 344 14 HOH HOH . R 10 HOH A 45 345 161 HOH HOH . R 10 HOH A 46 346 141 HOH HOH . R 10 HOH A 47 347 50 HOH HOH . R 10 HOH A 48 348 47 HOH HOH . R 10 HOH A 49 349 42 HOH HOH . R 10 HOH A 50 350 172 HOH HOH . R 10 HOH A 51 351 135 HOH HOH . R 10 HOH A 52 352 84 HOH HOH . R 10 HOH A 53 353 2 HOH HOH . R 10 HOH A 54 354 34 HOH HOH . R 10 HOH A 55 355 191 HOH HOH . R 10 HOH A 56 356 8 HOH HOH . R 10 HOH A 57 357 69 HOH HOH . R 10 HOH A 58 358 4 HOH HOH . R 10 HOH A 59 359 132 HOH HOH . R 10 HOH A 60 360 143 HOH HOH . R 10 HOH A 61 361 64 HOH HOH . R 10 HOH A 62 362 195 HOH HOH . R 10 HOH A 63 363 145 HOH HOH . R 10 HOH A 64 364 186 HOH HOH . R 10 HOH A 65 365 77 HOH HOH . R 10 HOH A 66 366 76 HOH HOH . R 10 HOH A 67 367 46 HOH HOH . R 10 HOH A 68 368 9 HOH HOH . R 10 HOH A 69 369 153 HOH HOH . R 10 HOH A 70 370 26 HOH HOH . R 10 HOH A 71 371 104 HOH HOH . R 10 HOH A 72 372 23 HOH HOH . R 10 HOH A 73 373 127 HOH HOH . R 10 HOH A 74 374 106 HOH HOH . R 10 HOH A 75 375 155 HOH HOH . R 10 HOH A 76 376 122 HOH HOH . R 10 HOH A 77 377 61 HOH HOH . R 10 HOH A 78 378 1 HOH HOH . R 10 HOH A 79 379 52 HOH HOH . R 10 HOH A 80 380 7 HOH HOH . R 10 HOH A 81 381 55 HOH HOH . R 10 HOH A 82 382 93 HOH HOH . R 10 HOH A 83 383 128 HOH HOH . R 10 HOH A 84 384 162 HOH HOH . R 10 HOH A 85 385 182 HOH HOH . R 10 HOH A 86 386 185 HOH HOH . R 10 HOH A 87 387 119 HOH HOH . R 10 HOH A 88 388 108 HOH HOH . R 10 HOH A 89 389 201 HOH HOH . R 10 HOH A 90 390 190 HOH HOH . R 10 HOH A 91 391 27 HOH HOH . R 10 HOH A 92 392 139 HOH HOH . R 10 HOH A 93 393 207 HOH HOH . R 10 HOH A 94 394 180 HOH HOH . R 10 HOH A 95 395 51 HOH HOH . R 10 HOH A 96 396 197 HOH HOH . R 10 HOH A 97 397 181 HOH HOH . R 10 HOH A 98 398 160 HOH HOH . R 10 HOH A 99 399 124 HOH HOH . R 10 HOH A 100 400 91 HOH HOH . R 10 HOH A 101 401 112 HOH HOH . R 10 HOH A 102 402 171 HOH HOH . R 10 HOH A 103 403 6 HOH HOH . R 10 HOH A 104 404 146 HOH HOH . R 10 HOH A 105 405 39 HOH HOH . R 10 HOH A 106 406 66 HOH HOH . R 10 HOH A 107 407 13 HOH HOH . R 10 HOH A 108 408 151 HOH HOH . R 10 HOH A 109 409 208 HOH HOH . R 10 HOH A 110 410 82 HOH HOH . R 10 HOH A 111 411 89 HOH HOH . R 10 HOH A 112 412 176 HOH HOH . R 10 HOH A 113 413 101 HOH HOH . R 10 HOH A 114 414 121 HOH HOH . R 10 HOH A 115 415 102 HOH HOH . R 10 HOH A 116 416 68 HOH HOH . R 10 HOH A 117 417 136 HOH HOH . R 10 HOH A 118 418 90 HOH HOH . R 10 HOH A 119 419 73 HOH HOH . R 10 HOH A 120 420 134 HOH HOH . R 10 HOH A 121 421 12 HOH HOH . R 10 HOH A 122 422 125 HOH HOH . R 10 HOH A 123 423 40 HOH HOH . R 10 HOH A 124 424 123 HOH HOH . R 10 HOH A 125 425 165 HOH HOH . R 10 HOH A 126 426 74 HOH HOH . R 10 HOH A 127 427 200 HOH HOH . R 10 HOH A 128 428 75 HOH HOH . R 10 HOH A 129 429 144 HOH HOH . R 10 HOH A 130 430 179 HOH HOH . R 10 HOH A 131 431 18 HOH HOH . R 10 HOH A 132 432 99 HOH HOH . S 10 HOH B 1 101 147 HOH HOH . S 10 HOH B 2 102 109 HOH HOH . S 10 HOH B 3 103 133 HOH HOH . S 10 HOH B 4 104 150 HOH HOH . S 10 HOH B 5 105 15 HOH HOH . S 10 HOH B 6 106 79 HOH HOH . S 10 HOH B 7 107 80 HOH HOH . S 10 HOH B 8 108 67 HOH HOH . T 10 HOH b 1 101 111 HOH HOH . T 10 HOH b 2 102 184 HOH HOH . T 10 HOH b 3 103 183 HOH HOH . U 10 HOH C 1 201 174 HOH HOH . U 10 HOH C 2 202 107 HOH HOH . U 10 HOH C 3 203 10 HOH HOH . U 10 HOH C 4 204 19 HOH HOH . U 10 HOH C 5 205 11 HOH HOH . U 10 HOH C 6 206 142 HOH HOH . U 10 HOH C 7 207 33 HOH HOH . U 10 HOH C 8 208 30 HOH HOH . U 10 HOH C 9 209 114 HOH HOH . U 10 HOH C 10 210 113 HOH HOH . U 10 HOH C 11 211 196 HOH HOH . U 10 HOH C 12 212 110 HOH HOH . U 10 HOH C 13 213 58 HOH HOH . U 10 HOH C 14 214 202 HOH HOH . U 10 HOH C 15 215 204 HOH HOH . U 10 HOH C 16 216 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . O 9 26.645 11.466 29.268 1 45.37 ? C1 EDO 211 A 1 HETATM 2 O O1 EDO . . . O 9 27.564 11.43 30.368 1 42.57 ? O1 EDO 211 A 1 HETATM 3 C C2 EDO . . . O 9 27.109 12.451 28.201 1 61.06 ? C2 EDO 211 A 1 HETATM 4 O O2 EDO . . . O 9 28.027 11.809 27.301 1 65.91 ? O2 EDO 211 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #