data_6DP5 # _model_server_result.job_id blALAwGWAXfFpQF4kDjJ9g _model_server_result.datetime_utc '2024-10-28 16:33:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dp5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":203}' # _entry.id 6DP5 # _exptl.entry_id 6DP5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.48 _cell.angle_gamma 90 _cell.entry_id 6DP5 _cell.length_a 81.899 _cell.length_b 37.505 _cell.length_c 62.254 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DP5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' U 4 B U 4 1_555 C P C 1 b C 5 1_555 ? C ? ? C ? ? ? ? ? ? ? 1.573 sing metalc ? metalc1 A OD2 ASP 17 A ASP 71 1_555 E MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc2 A OD1 ASP 17 A ASP 71 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc3 A OE1 GLU 55 A GLU 109 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc4 A OD1 ASP 78 A ASP 132 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc5 A OD2 ASP 78 A ASP 132 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc6 A OD2 ASP 78 A ASP 132 1_555 H K K . A K 204 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.481 ? metalc ? metalc7 A OE2 GLU 134 A GLU 188 1_555 H K K . A K 204 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.138 ? metalc ? metalc8 A OD1 ASP 138 A ASP 192 1_555 E MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc9 A OD1 ASP 138 A ASP 192 1_555 G K K . A K 203 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.85 ? metalc ? metalc10 A OD2 ASP 138 A ASP 192 1_555 G K K . A K 203 1_555 ? ? ? ? C ? ? ? ? ? ? ? 3.287 ? metalc ? metalc11 A O LYS 142 A LYS 196 1_555 S K K . C K 101 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 3.494 ? metalc ? metalc12 E MG MG . A MG 201 1_555 T O HOH . A HOH 301 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.024 ? metalc ? metalc13 E MG MG . A MG 201 1_555 T O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc14 E MG MG . A MG 201 1_555 T O HOH . A HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc15 E MG MG . A MG 201 1_555 C OP3 C 1 b C 5 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.007 ? metalc ? metalc16 E MG MG . A MG 201 1_555 C OP1 C 1 b C 5 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.396 ? metalc ? metalc17 E MG MG . A MG 201 1_555 C OP1 C 1 b C 5 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.252 ? metalc ? metalc18 F MG MG . A MG 202 1_555 B O3' U 4 B U 4 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.705 ? metalc ? metalc19 F MG MG . A MG 202 1_555 C OP1 C 1 b C 5 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.107 ? metalc ? metalc20 F MG MG . A MG 202 1_555 C OP1 C 1 b C 5 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.165 ? metalc ? metalc21 G K K . A K 203 1_555 T O HOH . A HOH 301 1_555 ? C ? ? C ? ? ? ? ? ? ? 2.79 ? metalc ? metalc22 G K K . A K 203 1_555 T O HOH . A HOH 308 1_555 ? C ? ? ? ? ? ? ? ? ? ? 3.472 ? metalc ? metalc23 G K K . A K 203 1_555 T O HOH . A HOH 330 1_555 ? C ? ? ? ? ? ? ? ? ? ? 3.036 ? metalc ? metalc24 G K K . A K 203 1_555 C OP2 G 2 b G 6 1_555 ? C ? ? ? ? ? ? ? ? ? ? 3.008 ? metalc ? metalc25 H K K . A K 204 1_555 T O HOH . A HOH 331 1_555 ? B ? ? ? ? ? ? ? ? ? ? 3.049 ? metalc ? metalc26 H K K . A K 204 1_555 T O HOH . A HOH 362 1_555 ? B ? ? ? ? ? ? ? ? ? ? 3.248 ? metalc ? metalc27 H K K . A K 204 1_555 U O HOH . B HOH 105 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc28 H K K . A K 204 1_555 C OP2 C 1 b C 5 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.556 ? metalc ? metalc29 U O HOH . B HOH 108 1_555 S K K . C K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.094 ? metalc ? metalc30 D O6 DG 5 C DG 5 1_555 S K K . C K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc31 S K K . C K 101 1_555 W O HOH . C HOH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.132 ? metalc ? metalc32 S K K . C K 101 1_555 W O HOH . C HOH 207 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.692 ? hydrog WATSON-CRICK hydrog1 B N1 A 1 B A 1 1_555 D N3 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N6 A 1 B A 1 1_555 D O4 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N3 C 2 B C 2 1_555 D N1 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N4 C 2 B C 2 1_555 D O6 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O2 C 2 B C 2 1_555 D N2 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 A 3 B A 3 1_555 D N3 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N6 A 3 B A 3 1_555 D O4 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N3 U 4 B U 4 1_555 D N1 DA 3 C DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O4 U 4 B U 4 1_555 D N6 DA 3 C DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C N3 C 1 b C 5 1_555 D N1 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N4 C 1 b C 5 1_555 D O6 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C O2 C 1 b C 5 1_555 D N2 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N1 G 2 b G 6 1_555 D N3 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N2 G 2 b G 6 1_555 D O2 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C O6 G 2 b G 6 1_555 D N4 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6DP5 _atom_sites.fract_transf_matrix[1][1] 0.01221 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001388 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026663 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016167 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 MG A 1 201 201 MG MG . F 5 MG A 1 202 202 MG MG . G 6 K A 1 203 211 K K . H 6 K A 1 204 212 K K . I 7 IOD A 1 205 1 IOD IOD . J 7 IOD A 1 206 2 IOD IOD . K 7 IOD A 1 207 3 IOD IOD . L 7 IOD A 1 208 4 IOD IOD . M 8 GOL A 1 209 5 GOL GOL . N 8 GOL A 1 210 8 GOL GOL . O 9 EDO A 1 211 1 EDO EDO . P 9 EDO A 1 212 2 EDO EDO . Q 9 EDO A 1 213 3 EDO EDO . R 9 EDO A 1 214 5 EDO EDO . S 6 K C 1 101 1 K K . T 10 HOH A 1 301 88 HOH HOH . T 10 HOH A 2 302 105 HOH HOH . T 10 HOH A 3 303 247 HOH HOH . T 10 HOH A 4 304 9 HOH HOH . T 10 HOH A 5 305 225 HOH HOH . T 10 HOH A 6 306 138 HOH HOH . T 10 HOH A 7 307 94 HOH HOH . T 10 HOH A 8 308 36 HOH HOH . T 10 HOH A 9 309 180 HOH HOH . T 10 HOH A 10 310 20 HOH HOH . T 10 HOH A 11 311 55 HOH HOH . T 10 HOH A 12 312 173 HOH HOH . T 10 HOH A 13 313 19 HOH HOH . T 10 HOH A 14 314 113 HOH HOH . T 10 HOH A 15 315 188 HOH HOH . T 10 HOH A 16 316 34 HOH HOH . T 10 HOH A 17 317 127 HOH HOH . T 10 HOH A 18 318 185 HOH HOH . T 10 HOH A 19 319 38 HOH HOH . T 10 HOH A 20 320 51 HOH HOH . T 10 HOH A 21 321 207 HOH HOH . T 10 HOH A 22 322 48 HOH HOH . T 10 HOH A 23 323 240 HOH HOH . T 10 HOH A 24 324 116 HOH HOH . T 10 HOH A 25 325 234 HOH HOH . T 10 HOH A 26 326 131 HOH HOH . T 10 HOH A 27 327 179 HOH HOH . T 10 HOH A 28 328 143 HOH HOH . T 10 HOH A 29 329 226 HOH HOH . T 10 HOH A 30 330 117 HOH HOH . T 10 HOH A 31 331 64 HOH HOH . T 10 HOH A 32 332 52 HOH HOH . T 10 HOH A 33 333 53 HOH HOH . T 10 HOH A 34 334 15 HOH HOH . T 10 HOH A 35 335 212 HOH HOH . T 10 HOH A 36 336 37 HOH HOH . T 10 HOH A 37 337 10 HOH HOH . T 10 HOH A 38 338 149 HOH HOH . T 10 HOH A 39 339 66 HOH HOH . T 10 HOH A 40 340 14 HOH HOH . T 10 HOH A 41 341 133 HOH HOH . T 10 HOH A 42 342 61 HOH HOH . T 10 HOH A 43 343 95 HOH HOH . T 10 HOH A 44 344 59 HOH HOH . T 10 HOH A 45 345 1 HOH HOH . T 10 HOH A 46 346 43 HOH HOH . T 10 HOH A 47 347 73 HOH HOH . T 10 HOH A 48 348 60 HOH HOH . T 10 HOH A 49 349 114 HOH HOH . T 10 HOH A 50 350 72 HOH HOH . T 10 HOH A 51 351 35 HOH HOH . T 10 HOH A 52 352 8 HOH HOH . T 10 HOH A 53 353 81 HOH HOH . T 10 HOH A 54 354 221 HOH HOH . T 10 HOH A 55 355 40 HOH HOH . T 10 HOH A 56 356 13 HOH HOH . T 10 HOH A 57 357 217 HOH HOH . T 10 HOH A 58 358 194 HOH HOH . T 10 HOH A 59 359 24 HOH HOH . T 10 HOH A 60 360 230 HOH HOH . T 10 HOH A 61 361 200 HOH HOH . T 10 HOH A 62 362 21 HOH HOH . T 10 HOH A 63 363 204 HOH HOH . T 10 HOH A 64 364 44 HOH HOH . T 10 HOH A 65 365 239 HOH HOH . T 10 HOH A 66 366 195 HOH HOH . T 10 HOH A 67 367 45 HOH HOH . T 10 HOH A 68 368 216 HOH HOH . T 10 HOH A 69 369 142 HOH HOH . T 10 HOH A 70 370 177 HOH HOH . T 10 HOH A 71 371 214 HOH HOH . T 10 HOH A 72 372 58 HOH HOH . T 10 HOH A 73 373 92 HOH HOH . T 10 HOH A 74 374 196 HOH HOH . T 10 HOH A 75 375 205 HOH HOH . T 10 HOH A 76 376 236 HOH HOH . T 10 HOH A 77 377 82 HOH HOH . T 10 HOH A 78 378 222 HOH HOH . T 10 HOH A 79 379 2 HOH HOH . T 10 HOH A 80 380 7 HOH HOH . T 10 HOH A 81 381 215 HOH HOH . T 10 HOH A 82 382 210 HOH HOH . T 10 HOH A 83 383 198 HOH HOH . T 10 HOH A 84 384 122 HOH HOH . T 10 HOH A 85 385 141 HOH HOH . T 10 HOH A 86 386 220 HOH HOH . T 10 HOH A 87 387 50 HOH HOH . T 10 HOH A 88 388 245 HOH HOH . T 10 HOH A 89 389 146 HOH HOH . T 10 HOH A 90 390 199 HOH HOH . T 10 HOH A 91 391 238 HOH HOH . T 10 HOH A 92 392 237 HOH HOH . T 10 HOH A 93 393 91 HOH HOH . T 10 HOH A 94 394 232 HOH HOH . T 10 HOH A 95 395 57 HOH HOH . T 10 HOH A 96 396 213 HOH HOH . T 10 HOH A 97 397 74 HOH HOH . T 10 HOH A 98 398 224 HOH HOH . T 10 HOH A 99 399 96 HOH HOH . T 10 HOH A 100 400 219 HOH HOH . T 10 HOH A 101 401 241 HOH HOH . T 10 HOH A 102 402 242 HOH HOH . T 10 HOH A 103 403 76 HOH HOH . T 10 HOH A 104 404 202 HOH HOH . T 10 HOH A 105 405 197 HOH HOH . T 10 HOH A 106 406 75 HOH HOH . T 10 HOH A 107 407 125 HOH HOH . T 10 HOH A 108 408 90 HOH HOH . T 10 HOH A 109 409 192 HOH HOH . T 10 HOH A 110 410 121 HOH HOH . T 10 HOH A 111 411 17 HOH HOH . T 10 HOH A 112 412 231 HOH HOH . T 10 HOH A 113 413 228 HOH HOH . T 10 HOH A 114 414 206 HOH HOH . T 10 HOH A 115 415 201 HOH HOH . T 10 HOH A 116 416 235 HOH HOH . T 10 HOH A 117 417 209 HOH HOH . T 10 HOH A 118 418 223 HOH HOH . T 10 HOH A 119 419 203 HOH HOH . T 10 HOH A 120 420 227 HOH HOH . T 10 HOH A 121 421 208 HOH HOH . U 10 HOH B 1 101 85 HOH HOH . U 10 HOH B 2 102 16 HOH HOH . U 10 HOH B 3 103 32 HOH HOH . U 10 HOH B 4 104 69 HOH HOH . U 10 HOH B 5 105 104 HOH HOH . U 10 HOH B 6 106 190 HOH HOH . U 10 HOH B 7 107 169 HOH HOH . U 10 HOH B 8 108 246 HOH HOH . U 10 HOH B 9 109 110 HOH HOH . U 10 HOH B 10 110 243 HOH HOH . V 10 HOH b 1 101 211 HOH HOH . V 10 HOH b 2 102 119 HOH HOH . V 10 HOH b 3 103 244 HOH HOH . V 10 HOH b 4 104 100 HOH HOH . V 10 HOH b 5 105 112 HOH HOH . W 10 HOH C 1 201 218 HOH HOH . W 10 HOH C 2 202 136 HOH HOH . W 10 HOH C 3 203 18 HOH HOH . W 10 HOH C 4 204 168 HOH HOH . W 10 HOH C 5 205 12 HOH HOH . W 10 HOH C 6 206 233 HOH HOH . W 10 HOH C 7 207 109 HOH HOH . W 10 HOH C 8 208 171 HOH HOH . W 10 HOH C 9 209 31 HOH HOH . W 10 HOH C 10 210 170 HOH HOH . W 10 HOH C 11 211 186 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id C _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 6 _atom_site.Cartn_x 22.202 _atom_site.Cartn_y -9.571 _atom_site.Cartn_z 9.186 _atom_site.occupancy 0.1 _atom_site.B_iso_or_equiv 30.29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 466 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #